Wall clock time and date at job start Tue Mar 31 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99556 * 2 1 4 4 C 1.53005 * 109.46810 * 125.00174 * 3 2 1 5 5 C 1.50704 * 109.46810 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00034 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99620 * 179.97438 * 5 4 3 8 8 C 1.47662 * 134.45232 * 179.97438 * 7 5 4 9 9 C 1.53515 * 85.97762 * 204.33554 * 8 7 5 10 10 C 1.47667 * 134.46160 * 0.02580 * 7 5 4 11 11 C 1.52674 * 113.56667 * 222.23087 * 9 8 7 12 12 C 1.53337 * 109.11709 * 286.18499 * 11 9 8 13 13 N 1.46882 * 108.75790 * 307.59102 * 12 11 9 14 14 C 1.36936 * 120.46262 * 235.51558 * 13 12 11 15 15 H 1.07999 * 120.00310 * 28.44164 * 14 13 12 16 16 C 1.38808 * 119.99783 * 208.43580 * 14 13 12 17 17 N 1.31627 * 119.99977 * 17.64532 * 16 14 13 18 18 Si 1.86803 * 120.00148 * 197.63955 * 16 14 13 19 19 H 1.48495 * 109.47050 * 90.00770 * 18 16 14 20 20 H 1.48502 * 109.47041 * 210.00086 * 18 16 14 21 21 H 1.48498 * 109.46924 * 330.00269 * 18 16 14 22 22 C 1.46888 * 119.06393 * 55.54005 * 13 12 11 23 23 C 1.52666 * 113.56535 * 91.02030 * 9 8 7 24 24 H 1.08000 * 120.00032 * 179.97438 * 1 2 3 25 25 H 1.08008 * 120.00114 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00129 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47444 * 5.00110 * 3 2 1 28 28 H 1.08999 * 109.47075 * 244.99404 * 3 2 1 29 29 H 1.08993 * 109.47169 * 59.99768 * 4 3 2 30 30 H 1.08994 * 109.47080 * 299.99258 * 4 3 2 31 31 H 1.09004 * 113.79410 * 90.07656 * 8 7 5 32 32 H 1.09003 * 113.79706 * 318.60130 * 8 7 5 33 33 H 1.09005 * 113.78797 * 41.38860 * 10 7 5 34 34 H 1.08999 * 113.79025 * 269.93201 * 10 7 5 35 35 H 1.09000 * 109.52570 * 46.07726 * 11 9 8 36 36 H 1.09003 * 109.52875 * 166.28955 * 11 9 8 37 37 H 1.08997 * 109.58577 * 187.80335 * 12 11 9 38 38 H 1.09006 * 109.58569 * 67.37039 * 12 11 9 39 39 H 0.96997 * 119.99883 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.58623 * 184.67264 * 22 13 12 41 41 H 1.09000 * 109.58974 * 64.23488 * 22 13 12 42 42 H 1.09003 * 109.53215 * 193.70098 * 23 9 8 43 43 H 1.08996 * 109.53373 * 313.91952 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7888 2.6381 1.1813 6 8 3.5709 3.4641 0.3205 7 7 4.7053 2.8871 2.1377 8 6 5.6038 4.0194 2.4391 9 6 6.4821 2.9893 3.1632 10 6 5.2138 2.1367 3.3033 11 6 7.0349 3.4878 4.4961 12 6 8.1516 4.5039 4.2282 13 7 9.1259 3.9031 3.3078 14 6 10.4500 3.8299 3.6493 15 1 10.7369 3.7668 4.6886 16 6 11.4234 3.8367 2.6598 17 7 11.1266 4.2549 1.4475 18 14 13.1546 3.2526 3.0485 19 1 13.2546 1.7938 2.7894 20 1 14.1258 3.9757 2.1886 21 1 13.4597 3.5240 4.4762 22 6 8.6601 3.3826 2.0156 23 6 7.5468 2.3590 2.2689 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 3.7399 0.5067 1.0921 30 1 2.4772 1.2357 2.1130 31 1 5.1644 4.7654 3.1014 32 1 6.0734 4.4552 1.5572 33 1 5.3732 1.0762 3.1081 34 1 4.6583 2.3227 4.2225 35 1 6.2373 3.9646 5.0659 36 1 7.4356 2.6466 5.0619 37 1 8.6445 4.7607 5.1658 38 1 7.7283 5.4016 3.7774 39 1 11.8069 4.2601 0.7561 40 1 9.4882 2.9009 1.4958 41 1 8.2724 4.2017 1.4100 42 1 7.9643 1.4813 2.7625 43 1 7.0986 2.0658 1.3197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326574879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:56 Heat of formation + Delta-G solvation = 29.794393 kcal Electronic energy + Delta-G solvation = -21995.299217 eV Core-core repulsion = 18849.380041 eV Total energy + Delta-G solvation = -3145.919176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61273 -38.47940 -35.90159 -35.42595 -32.53928 -31.11550 -30.21205 -29.90001 -27.13341 -26.32146 -24.38057 -23.54206 -22.37056 -20.84959 -19.99329 -18.94373 -18.05560 -16.93897 -16.29347 -16.07482 -15.64482 -15.28239 -14.84157 -14.52538 -13.88482 -13.64977 -13.57488 -13.37275 -12.99109 -12.79795 -12.57758 -12.44529 -12.04131 -11.93020 -11.61725 -11.41488 -11.22906 -11.20043 -11.05030 -10.75358 -10.47678 -10.32013 -10.13381 -9.89245 -9.80311 -9.61616 -9.57137 -9.30895 -8.50854 -8.46507 -6.67665 -5.79771 -3.22991 2.02596 2.75466 2.97811 3.36972 3.44133 3.45315 4.37945 4.48587 4.62534 4.73874 4.94100 4.97444 5.07741 5.16214 5.23250 5.37324 5.39064 5.49211 5.53179 5.57535 5.60945 5.61641 5.78726 5.88667 5.96744 6.02857 6.07287 6.10824 6.26575 6.39292 6.43094 6.54162 6.58340 6.59084 6.66104 6.80587 6.93809 7.32882 7.64774 7.78826 7.88106 8.28170 8.44747 9.20308 9.83927 10.40120 11.28264 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032357 B = 0.003520 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.131310 B = 7952.130812 C = 8223.745329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.080 4.080 4 C -0.129 4.129 5 C 0.530 3.470 6 O -0.549 6.549 7 N -0.640 5.640 8 C 0.115 3.885 9 C -0.074 4.074 10 C 0.102 3.898 11 C -0.119 4.119 12 C 0.146 3.854 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.172 3.828 23 C -0.116 4.116 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.254 0.746 40 H 0.090 0.910 41 H 0.018 0.982 42 H 0.061 0.939 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.383 -7.876 2.812 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.118 4.118 4 C -0.169 4.169 5 C 0.320 3.680 6 O -0.427 6.427 7 N -0.375 5.375 8 C -0.006 4.006 9 C -0.075 4.075 10 C -0.021 4.021 11 C -0.159 4.159 12 C 0.019 3.981 13 N -0.313 5.313 14 C -0.383 4.383 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.046 3.954 23 C -0.155 4.155 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.525 -7.438 2.049 18.237 hybrid contribution 0.823 -0.385 0.184 0.927 sum -15.702 -7.824 2.233 17.685 Atomic orbital electron populations 1.23864 0.95967 1.01806 1.01666 1.23003 0.96086 0.98441 0.99443 1.20517 0.97784 0.95242 0.98219 1.21542 0.98721 0.95862 1.00764 1.20353 0.78139 0.88869 0.80624 1.90694 1.65451 1.48978 1.37551 1.50096 1.39043 1.21432 1.26930 1.23269 0.87380 0.90600 0.99386 1.22000 0.93324 0.94998 0.97171 1.23451 0.93132 0.97733 0.87819 1.21957 0.98934 1.00659 0.94367 1.20887 0.90081 0.92708 0.94384 1.44026 1.03581 1.67226 1.16485 1.19189 0.81693 1.44947 0.92501 0.91674 1.25057 0.97836 1.00116 0.96634 1.70037 1.33500 1.48181 1.02815 0.86303 0.84424 0.78495 0.77621 1.21467 1.21804 1.20439 1.20776 0.94154 0.92990 0.87499 1.21949 0.96388 1.00166 0.96975 0.88559 0.88568 0.87301 0.90819 0.90102 0.88960 0.89199 0.90231 0.89819 0.90337 0.89989 0.92745 0.91656 0.92634 0.96372 0.93597 0.89229 0.96395 0.92062 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 14.32 29.02 0.42 -1.15 16 2 C -0.15 -1.32 9.52 -36.02 -0.34 -1.66 16 3 C -0.08 -0.85 4.95 -27.88 -0.14 -0.99 16 4 C -0.13 -1.38 5.43 -27.88 -0.15 -1.53 16 5 C 0.53 7.99 8.06 -10.98 -0.09 7.90 16 6 O -0.55 -10.42 16.71 5.56 0.09 -10.33 16 7 N -0.64 -9.25 3.44 -180.24 -0.62 -9.87 16 8 C 0.12 1.81 7.62 -3.15 -0.02 1.78 16 9 C -0.07 -1.12 0.77 -154.44 -0.12 -1.24 16 10 C 0.10 1.21 7.74 -3.17 -0.02 1.19 16 11 C -0.12 -1.82 5.26 -26.72 -0.14 -1.96 16 12 C 0.15 2.86 6.39 -3.66 -0.02 2.83 16 13 N -0.59 -14.18 2.96 -172.21 -0.51 -14.69 16 14 C -0.25 -6.76 9.56 -15.06 -0.14 -6.91 16 15 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 16 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 17 N -0.90 -25.92 11.21 55.49 0.62 -25.30 16 18 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.17 3.96 5.22 -3.66 -0.02 3.94 16 23 C -0.12 -2.09 5.21 -26.73 -0.14 -2.23 16 24 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16 25 H 0.10 0.75 7.84 -52.48 -0.41 0.34 16 26 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 27 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 28 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 32 H 0.08 1.51 7.41 -51.93 -0.38 1.13 16 33 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 38 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.09 2.36 5.98 -51.93 -0.31 2.05 16 41 H 0.02 0.44 7.49 -51.93 -0.39 0.05 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -30.99 346.01 -8.59 -39.58 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.33 Total: -0.90 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.02 Total: -0.05 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.51 Total: -49.85 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.99 -8.59 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.374 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds