Wall clock time and date at job start Tue Mar 31 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99556 * 2 1 4 4 C 1.53005 * 109.46810 * 125.00174 * 3 2 1 5 5 C 1.50704 * 109.46810 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00034 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99620 * 179.97438 * 5 4 3 8 8 C 1.47662 * 134.45232 * 179.97438 * 7 5 4 9 9 C 1.53515 * 85.97762 * 204.33554 * 8 7 5 10 10 C 1.47667 * 134.46160 * 0.02580 * 7 5 4 11 11 C 1.52674 * 113.56667 * 222.23087 * 9 8 7 12 12 C 1.53337 * 109.11709 * 286.18499 * 11 9 8 13 13 N 1.46882 * 108.75790 * 307.59102 * 12 11 9 14 14 C 1.36936 * 120.46262 * 235.51558 * 13 12 11 15 15 H 1.07999 * 120.00310 * 28.44164 * 14 13 12 16 16 C 1.38808 * 119.99783 * 208.43580 * 14 13 12 17 17 N 1.31627 * 119.99977 * 17.64532 * 16 14 13 18 18 Si 1.86803 * 120.00148 * 197.63955 * 16 14 13 19 19 H 1.48495 * 109.47050 * 90.00770 * 18 16 14 20 20 H 1.48502 * 109.47041 * 210.00086 * 18 16 14 21 21 H 1.48498 * 109.46924 * 330.00269 * 18 16 14 22 22 C 1.46888 * 119.06393 * 55.54005 * 13 12 11 23 23 C 1.52666 * 113.56535 * 91.02030 * 9 8 7 24 24 H 1.08000 * 120.00032 * 179.97438 * 1 2 3 25 25 H 1.08008 * 120.00114 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00129 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47444 * 5.00110 * 3 2 1 28 28 H 1.08999 * 109.47075 * 244.99404 * 3 2 1 29 29 H 1.08993 * 109.47169 * 59.99768 * 4 3 2 30 30 H 1.08994 * 109.47080 * 299.99258 * 4 3 2 31 31 H 1.09004 * 113.79410 * 90.07656 * 8 7 5 32 32 H 1.09003 * 113.79706 * 318.60130 * 8 7 5 33 33 H 1.09005 * 113.78797 * 41.38860 * 10 7 5 34 34 H 1.08999 * 113.79025 * 269.93201 * 10 7 5 35 35 H 1.09000 * 109.52570 * 46.07726 * 11 9 8 36 36 H 1.09003 * 109.52875 * 166.28955 * 11 9 8 37 37 H 1.08997 * 109.58577 * 187.80335 * 12 11 9 38 38 H 1.09006 * 109.58569 * 67.37039 * 12 11 9 39 39 H 0.96997 * 119.99883 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.58623 * 184.67264 * 22 13 12 41 41 H 1.09000 * 109.58974 * 64.23488 * 22 13 12 42 42 H 1.09003 * 109.53215 * 193.70098 * 23 9 8 43 43 H 1.08996 * 109.53373 * 313.91952 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7888 2.6381 1.1813 6 8 3.5709 3.4641 0.3205 7 7 4.7053 2.8871 2.1377 8 6 5.6038 4.0194 2.4391 9 6 6.4821 2.9893 3.1632 10 6 5.2138 2.1367 3.3033 11 6 7.0349 3.4878 4.4961 12 6 8.1516 4.5039 4.2282 13 7 9.1259 3.9031 3.3078 14 6 10.4500 3.8299 3.6493 15 1 10.7369 3.7668 4.6886 16 6 11.4234 3.8367 2.6598 17 7 11.1266 4.2549 1.4475 18 14 13.1546 3.2526 3.0485 19 1 13.2546 1.7938 2.7894 20 1 14.1258 3.9757 2.1886 21 1 13.4597 3.5240 4.4762 22 6 8.6601 3.3826 2.0156 23 6 7.5468 2.3590 2.2689 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 3.7399 0.5067 1.0921 30 1 2.4772 1.2357 2.1130 31 1 5.1644 4.7654 3.1014 32 1 6.0734 4.4552 1.5572 33 1 5.3732 1.0762 3.1081 34 1 4.6583 2.3227 4.2225 35 1 6.2373 3.9646 5.0659 36 1 7.4356 2.6466 5.0619 37 1 8.6445 4.7607 5.1658 38 1 7.7283 5.4016 3.7774 39 1 11.8069 4.2601 0.7561 40 1 9.4882 2.9009 1.4958 41 1 8.2724 4.2017 1.4100 42 1 7.9643 1.4813 2.7625 43 1 7.0986 2.0658 1.3197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326574879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:56 Heat of formation + Delta-G solvation = 11.624631 kcal Electronic energy + Delta-G solvation = -21996.087117 eV Core-core repulsion = 18849.380041 eV Total energy + Delta-G solvation = -3146.707076 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82181 -39.72767 -37.50565 -36.25273 -34.27895 -32.31073 -31.69640 -31.31924 -28.54371 -27.44977 -26.00006 -24.61120 -23.93610 -22.47856 -20.66191 -20.13845 -19.52076 -18.35445 -17.74713 -17.13509 -16.83382 -16.73417 -16.15833 -15.68522 -15.43213 -15.24220 -14.91795 -14.62347 -14.31256 -13.92186 -13.89155 -13.50798 -13.33231 -13.10169 -13.03022 -12.90502 -12.82752 -12.57390 -12.20219 -12.03742 -12.00209 -11.89680 -11.79076 -11.34625 -11.29804 -11.23085 -10.67102 -10.51441 -10.21373 -9.66492 -8.64626 -7.85363 -5.31393 1.38466 1.47781 1.48952 1.57858 1.63491 1.90684 2.52836 3.26173 3.39479 3.49330 3.72211 3.89888 3.97665 4.05377 4.16477 4.20571 4.29044 4.45918 4.47533 4.55464 4.58701 4.64685 4.68663 4.75326 4.86064 4.89644 4.91535 4.95352 5.06654 5.08008 5.15100 5.21816 5.27889 5.34246 5.42562 5.55622 5.67403 5.75748 5.76815 5.91380 6.41504 6.78058 7.14103 7.16814 7.89785 8.40533 9.20312 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032357 B = 0.003520 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.131310 B = 7952.130812 C = 8223.745329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C -0.078 4.078 4 C -0.117 4.117 5 C 0.521 3.479 6 O -0.601 6.601 7 N -0.643 5.643 8 C 0.109 3.891 9 C -0.077 4.077 10 C 0.122 3.878 11 C -0.103 4.103 12 C 0.138 3.862 13 N -0.608 5.608 14 C -0.257 4.257 15 H 0.071 0.929 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.966 3.034 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.266 1.266 22 C 0.180 3.820 23 C -0.100 4.100 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.009 0.991 39 H 0.248 0.752 40 H 0.050 0.950 41 H -0.015 1.015 42 H 0.067 0.933 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.181 -10.197 5.451 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C -0.116 4.116 4 C -0.157 4.157 5 C 0.313 3.687 6 O -0.483 6.483 7 N -0.377 5.377 8 C -0.014 4.014 9 C -0.078 4.078 10 C 0.001 3.999 11 C -0.143 4.143 12 C 0.013 3.987 13 N -0.332 5.332 14 C -0.387 4.387 15 H 0.089 0.911 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.794 3.206 19 H -0.212 1.212 20 H -0.227 1.227 21 H -0.190 1.190 22 C 0.054 3.946 23 C -0.139 4.139 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.143 0.857 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.003 0.997 42 H 0.085 0.915 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.342 -9.783 4.747 21.323 hybrid contribution 1.364 0.439 -0.645 1.571 sum -16.979 -9.345 4.102 19.810 Atomic orbital electron populations 1.24047 0.95885 1.02566 1.00320 1.22963 0.96262 0.97830 1.00591 1.20452 0.97557 0.96093 0.97525 1.21565 0.98696 0.93532 1.01863 1.21222 0.77959 0.89850 0.79709 1.90670 1.67150 1.50956 1.39511 1.50219 1.38457 1.21318 1.27657 1.23255 0.88238 0.91621 0.98296 1.21893 0.93731 0.95827 0.96357 1.23553 0.90191 0.98111 0.88081 1.21805 0.98164 0.99650 0.94648 1.21105 0.90665 0.93771 0.93206 1.44298 1.03747 1.68033 1.17098 1.19564 0.83107 1.43383 0.92687 0.91146 1.25830 1.01587 1.00988 0.96612 1.70214 1.34327 1.50209 1.03776 0.85282 0.79861 0.77686 0.77735 1.21186 1.22697 1.19007 1.20497 0.94341 0.92884 0.86861 1.21667 0.95578 0.98685 0.97956 0.86780 0.88885 0.85702 0.92283 0.92134 0.86951 0.86505 0.88360 0.93791 0.87986 0.86224 0.88805 0.90852 0.92479 0.97265 0.94342 0.93138 0.99711 0.91461 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.16 -2.38 9.52 25.65 0.24 -2.13 16 3 C -0.08 -1.58 4.95 29.85 0.15 -1.44 16 4 C -0.12 -2.18 5.43 29.85 0.16 -2.02 16 5 C 0.52 15.05 8.06 87.66 0.71 15.76 16 6 O -0.60 -23.37 16.71 -3.02 -0.05 -23.42 16 7 N -0.64 -17.11 3.44 -842.53 -2.90 -20.01 16 8 C 0.11 3.30 7.62 86.32 0.66 3.96 16 9 C -0.08 -2.15 0.77 -52.04 -0.04 -2.19 16 10 C 0.12 2.31 7.74 86.30 0.67 2.98 16 11 C -0.10 -2.80 5.26 30.60 0.16 -2.64 16 12 C 0.14 5.27 6.39 86.42 0.55 5.82 16 13 N -0.61 -29.64 2.96 -698.75 -2.07 -31.70 16 14 C -0.26 -13.85 9.56 84.03 0.80 -13.04 16 15 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 16 C -0.06 -3.08 4.89 84.86 0.42 -2.67 16 17 N -0.94 -56.50 11.21 21.65 0.24 -56.26 16 18 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 C 0.18 8.68 5.22 86.42 0.45 9.13 16 23 C -0.10 -3.56 5.21 30.60 0.16 -3.40 16 24 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 25 H 0.09 1.31 7.84 -2.91 -0.02 1.28 16 26 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 27 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 28 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.10 2.61 8.07 -2.38 -0.02 2.59 16 32 H 0.04 1.68 7.41 -2.39 -0.02 1.66 16 33 H 0.10 1.56 8.09 -2.38 -0.02 1.54 16 34 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 38 H 0.01 0.37 8.08 -2.38 -0.02 0.35 16 39 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.05 2.81 5.98 -2.39 -0.01 2.79 16 41 H -0.02 -0.81 7.49 -2.39 -0.02 -0.83 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.76 8.01 -2.39 -0.02 1.74 16 Total: -1.00 -72.23 346.01 4.27 -67.96 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.96 Total: 10.21 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.06 Total: 6.49 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.73 Total: -107.97 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -72.23 4.27 -67.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.586 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds