Wall clock time and date at job start Tue Mar 31 2020 00:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47144 * 2 1 4 4 O 1.42894 * 109.47586 * 62.10563 * 3 2 1 5 5 C 1.53002 * 109.47082 * 182.11099 * 3 2 1 6 6 C 1.53002 * 109.46790 * 304.99572 * 5 3 2 7 7 C 1.53005 * 109.47059 * 302.10633 * 3 2 1 8 8 N 1.46504 * 109.47248 * 182.64163 * 7 3 2 9 9 C 1.46496 * 119.99651 * 270.28194 * 8 7 3 10 10 C 1.38818 * 120.00146 * 90.27701 * 8 7 3 11 11 C 1.39793 * 119.58591 * 10.61941 * 10 8 7 12 12 C 1.38599 * 119.49376 * 179.97438 * 11 10 8 13 13 C 1.38389 * 118.67934 * 359.72796 * 12 11 10 14 14 C 1.40556 * 119.14726 * 0.53543 * 13 12 11 15 15 C 1.41309 * 119.78507 * 179.73214 * 14 13 12 16 16 H 1.08004 * 119.99956 * 7.50459 * 15 14 13 17 17 C 1.40022 * 120.00275 * 187.50414 * 15 14 13 18 18 N 1.30744 * 120.00151 * 7.73906 * 17 15 14 19 19 Si 1.86805 * 120.00249 * 187.45859 * 17 15 14 20 20 H 1.48500 * 109.46816 * 265.30098 * 19 17 15 21 21 H 1.48493 * 109.46872 * 25.29607 * 19 17 15 22 22 H 1.48497 * 109.47255 * 145.30257 * 19 17 15 23 23 N 1.31954 * 119.58643 * 190.59748 * 10 8 7 24 24 H 1.08995 * 109.47334 * 185.62031 * 1 2 3 25 25 H 1.08997 * 109.47510 * 305.62520 * 1 2 3 26 26 H 1.09001 * 109.46817 * 65.62246 * 1 2 3 27 27 H 1.09001 * 109.47075 * 239.99479 * 2 1 3 28 28 H 1.08995 * 109.47070 * 119.99721 * 2 1 3 29 29 H 0.96697 * 114.00476 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47363 * 64.99572 * 5 3 2 31 31 H 1.09001 * 109.47387 * 184.99988 * 5 3 2 32 32 H 1.09008 * 109.47002 * 179.97438 * 6 5 3 33 33 H 1.08995 * 109.47230 * 299.99925 * 6 5 3 34 34 H 1.09001 * 109.46816 * 60.00067 * 6 5 3 35 35 H 1.09003 * 109.47103 * 62.64152 * 7 3 2 36 36 H 1.09003 * 109.47411 * 302.63713 * 7 3 2 37 37 H 1.09002 * 109.47215 * 264.64590 * 9 8 7 38 38 H 1.08996 * 109.47743 * 24.64717 * 9 8 7 39 39 H 1.08997 * 109.47373 * 144.65357 * 9 8 7 40 40 H 1.08008 * 120.25241 * 359.95416 * 11 10 8 41 41 H 1.07997 * 120.65620 * 180.02562 * 12 11 10 42 42 H 1.07994 * 120.42469 * 180.28375 * 13 12 11 43 43 H 0.96991 * 120.00617 * 179.72377 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6046 2.1017 1.1906 5 6 3.5691 1.4428 -0.0531 6 6 4.1196 0.6011 1.0999 7 6 1.4871 2.1789 -1.2219 8 7 2.0256 3.5409 -1.2562 9 6 1.3140 4.6271 -0.5780 10 6 3.2101 3.8023 -1.9313 11 6 3.7648 2.8204 -2.7574 12 6 4.9473 3.0836 -3.4309 13 6 5.5432 4.3218 -3.2674 14 6 4.9395 5.2654 -2.4185 15 6 5.5396 6.5319 -2.2374 16 1 6.3891 6.8181 -2.8398 17 6 5.0328 7.4159 -1.2769 18 7 4.1056 7.0170 -0.4459 19 14 5.6870 9.1628 -1.1777 20 1 6.7688 9.2293 -0.1626 21 1 6.2253 9.5656 -2.5018 22 1 4.5871 10.0820 -0.7900 23 7 3.7981 4.9745 -1.7854 24 1 -0.3634 -1.0227 0.1006 25 1 -0.3634 0.5986 0.8353 26 1 -0.3633 0.4242 -0.9361 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8926 3.0223 1.2583 30 1 3.8998 1.0199 -1.0018 31 1 3.9356 2.4654 0.0363 32 1 5.2090 0.6009 1.0618 33 1 3.7889 1.0239 2.0485 34 1 3.7531 -0.4215 1.0105 35 1 0.3996 2.2195 -1.1603 36 1 1.7802 1.6495 -2.1286 37 1 0.6761 5.1460 -1.2935 38 1 0.7008 4.2151 0.2234 39 1 2.0356 5.3286 -0.1594 40 1 3.2759 1.8639 -2.8697 41 1 5.3920 2.3388 -4.0742 42 1 6.4625 4.5585 -3.7824 43 1 3.7574 7.6280 0.2220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331556255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:58 Heat of formation + Delta-G solvation = -15.965267 kcal Electronic energy + Delta-G solvation = -23110.924075 eV Core-core repulsion = 19963.020611 eV Total energy + Delta-G solvation = -3147.903464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.42286 -37.80196 -34.94249 -33.37513 -33.28019 -31.58000 -30.48464 -29.34261 -28.13799 -25.91765 -24.62150 -23.64515 -22.59819 -21.25154 -20.09127 -19.43318 -17.50422 -16.16669 -16.09480 -15.31624 -14.97494 -14.66786 -14.40659 -14.14126 -13.74789 -13.52790 -13.25412 -13.07490 -12.78327 -12.56272 -12.06447 -11.94112 -11.79227 -11.59945 -11.55376 -11.29393 -11.15984 -11.04063 -10.95807 -10.74061 -10.64086 -10.52609 -10.29804 -10.08413 -9.93411 -9.68054 -9.30390 -8.61683 -7.92372 -7.48293 -6.45553 -6.37155 -4.47128 2.84705 3.10245 3.13593 3.20735 3.26900 3.94473 3.96953 4.51142 4.79172 4.99698 5.15166 5.19895 5.38504 5.57490 5.66259 5.70649 5.79752 5.91010 5.93731 6.01008 6.01983 6.03563 6.14884 6.22015 6.28113 6.39566 6.41573 6.44367 6.53997 6.65241 6.72758 6.77834 6.83315 6.89289 7.08443 7.20202 7.57475 7.80865 7.92526 7.97300 8.02040 8.35042 8.52480 8.78662 9.08546 10.19976 10.36420 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.005496 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.072344 B = 5093.092299 C = 5501.954695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.119 3.881 4 O -0.563 6.563 5 C -0.144 4.144 6 C -0.146 4.146 7 C 0.109 3.891 8 N -0.624 5.624 9 C 0.099 3.901 10 C 0.414 3.586 11 C -0.361 4.361 12 C -0.032 4.032 13 C -0.317 4.317 14 C 0.295 3.705 15 C -0.437 4.437 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.721 5.721 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.262 1.262 22 H -0.277 1.277 23 N -0.529 5.529 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.377 0.623 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 -8.259 2.426 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.077 3.923 4 O -0.370 6.370 5 C -0.181 4.181 6 C -0.203 4.203 7 C -0.016 4.016 8 N -0.342 5.342 9 C -0.044 4.044 10 C 0.175 3.825 11 C -0.387 4.387 12 C -0.057 4.057 13 C -0.340 4.340 14 C 0.168 3.832 15 C -0.469 4.469 16 H 0.100 0.900 17 C -0.148 4.148 18 N -0.342 5.342 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.186 1.186 22 H -0.202 1.202 23 N -0.250 5.250 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.953 -8.138 3.302 10.610 hybrid contribution 0.953 0.658 -0.690 1.348 sum -5.000 -7.480 2.612 9.369 Atomic orbital electron populations 1.21765 0.95725 1.01065 1.02210 1.21515 0.96231 0.94528 1.02375 1.21729 0.93247 0.91994 0.85328 1.86372 1.78789 1.29953 1.41897 1.22191 0.94942 1.01917 0.99088 1.21756 1.00072 0.99438 0.99078 1.21999 0.97711 0.83776 0.98098 1.45914 1.23539 1.06239 1.58476 1.21523 0.96913 0.90810 0.95146 1.18394 0.85243 0.91067 0.87768 1.20620 1.03779 1.01131 1.13173 1.20586 0.93995 0.95417 0.95658 1.21531 1.04282 0.96390 1.11779 1.18170 0.86736 0.91980 0.86288 1.19548 1.12928 0.97817 1.16593 0.90002 1.25970 0.94088 1.00083 0.94614 1.70025 1.18560 1.35037 1.10600 0.86393 0.79228 0.82036 0.79590 1.19660 1.18583 1.20160 1.68133 1.12032 1.16839 1.27971 0.93334 0.91842 0.92862 0.91084 0.91108 0.77378 0.90932 0.90651 0.93387 0.92728 0.93182 0.91092 0.90351 0.95404 0.93555 0.88454 0.89074 0.89053 0.88838 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.27 37.16 0.34 -1.35 16 2 C -0.11 -1.35 4.65 -26.73 -0.12 -1.48 16 3 C 0.12 1.77 0.58 -90.62 -0.05 1.71 16 4 O -0.56 -8.78 11.45 -35.23 -0.40 -9.19 16 5 C -0.14 -2.37 3.81 -26.73 -0.10 -2.48 16 6 C -0.15 -2.13 9.32 37.16 0.35 -1.78 16 7 C 0.11 1.73 4.21 -4.04 -0.02 1.72 16 8 N -0.62 -12.05 2.52 -181.69 -0.46 -12.50 16 9 C 0.10 1.84 9.51 59.84 0.57 2.41 16 10 C 0.41 9.58 5.70 -155.33 -0.88 8.70 16 11 C -0.36 -7.95 7.54 -38.87 -0.29 -8.24 16 12 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 13 C -0.32 -7.87 9.83 -38.65 -0.38 -8.25 16 14 C 0.29 7.98 6.52 -85.00 -0.55 7.43 16 15 C -0.44 -11.60 9.13 -37.75 -0.34 -11.94 16 16 H 0.08 2.06 7.86 -52.48 -0.41 1.65 16 17 C 0.08 1.93 5.47 -17.35 -0.09 1.83 16 18 N -0.72 -18.29 11.31 55.55 0.63 -17.66 16 19 Si 0.90 18.43 29.57 -169.99 -5.03 13.41 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 N -0.53 -13.90 6.77 -10.33 -0.07 -13.97 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.78 7.58 -51.93 -0.39 0.39 16 26 H 0.05 0.58 6.78 -51.93 -0.35 0.23 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 29 H 0.38 6.02 6.79 45.56 0.31 6.33 16 30 H 0.07 1.23 6.61 -51.93 -0.34 0.89 16 31 H 0.07 1.54 6.67 -51.93 -0.35 1.19 16 32 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 34 H 0.05 0.64 6.39 -51.93 -0.33 0.31 16 35 H 0.07 1.04 6.60 -51.93 -0.34 0.70 16 36 H 0.08 1.25 5.80 -51.93 -0.30 0.95 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.71 6.72 -51.93 -0.35 0.37 16 39 H 0.10 2.08 7.13 -51.93 -0.37 1.71 16 40 H 0.09 1.80 5.44 -52.48 -0.29 1.51 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -27.65 330.26 -8.27 -35.93 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.93 Total: 11.86 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.99 Total: -12.85 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.10 Total: -44.13 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.40 Total: -9.19 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.65 -8.27 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331556255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.961 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds