Wall clock time and date at job start Tue Mar 31 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47144 * 2 1 4 4 O 1.42894 * 109.47586 * 62.10563 * 3 2 1 5 5 C 1.53002 * 109.47082 * 182.11099 * 3 2 1 6 6 C 1.53002 * 109.46790 * 304.99572 * 5 3 2 7 7 C 1.53005 * 109.47059 * 302.10633 * 3 2 1 8 8 N 1.46504 * 109.47248 * 182.64163 * 7 3 2 9 9 C 1.46496 * 119.99651 * 270.28194 * 8 7 3 10 10 C 1.38818 * 120.00146 * 90.27701 * 8 7 3 11 11 C 1.39793 * 119.58591 * 10.61941 * 10 8 7 12 12 C 1.38599 * 119.49376 * 179.97438 * 11 10 8 13 13 C 1.38389 * 118.67934 * 359.72796 * 12 11 10 14 14 C 1.40556 * 119.14726 * 0.53543 * 13 12 11 15 15 C 1.41309 * 119.78507 * 179.73214 * 14 13 12 16 16 H 1.08004 * 119.99956 * 7.50459 * 15 14 13 17 17 C 1.40022 * 120.00275 * 187.50414 * 15 14 13 18 18 N 1.30744 * 120.00151 * 7.73906 * 17 15 14 19 19 Si 1.86805 * 120.00249 * 187.45859 * 17 15 14 20 20 H 1.48500 * 109.46816 * 265.30098 * 19 17 15 21 21 H 1.48493 * 109.46872 * 25.29607 * 19 17 15 22 22 H 1.48497 * 109.47255 * 145.30257 * 19 17 15 23 23 N 1.31954 * 119.58643 * 190.59748 * 10 8 7 24 24 H 1.08995 * 109.47334 * 185.62031 * 1 2 3 25 25 H 1.08997 * 109.47510 * 305.62520 * 1 2 3 26 26 H 1.09001 * 109.46817 * 65.62246 * 1 2 3 27 27 H 1.09001 * 109.47075 * 239.99479 * 2 1 3 28 28 H 1.08995 * 109.47070 * 119.99721 * 2 1 3 29 29 H 0.96697 * 114.00476 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47363 * 64.99572 * 5 3 2 31 31 H 1.09001 * 109.47387 * 184.99988 * 5 3 2 32 32 H 1.09008 * 109.47002 * 179.97438 * 6 5 3 33 33 H 1.08995 * 109.47230 * 299.99925 * 6 5 3 34 34 H 1.09001 * 109.46816 * 60.00067 * 6 5 3 35 35 H 1.09003 * 109.47103 * 62.64152 * 7 3 2 36 36 H 1.09003 * 109.47411 * 302.63713 * 7 3 2 37 37 H 1.09002 * 109.47215 * 264.64590 * 9 8 7 38 38 H 1.08996 * 109.47743 * 24.64717 * 9 8 7 39 39 H 1.08997 * 109.47373 * 144.65357 * 9 8 7 40 40 H 1.08008 * 120.25241 * 359.95416 * 11 10 8 41 41 H 1.07997 * 120.65620 * 180.02562 * 12 11 10 42 42 H 1.07994 * 120.42469 * 180.28375 * 13 12 11 43 43 H 0.96991 * 120.00617 * 179.72377 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6046 2.1017 1.1906 5 6 3.5691 1.4428 -0.0531 6 6 4.1196 0.6011 1.0999 7 6 1.4871 2.1789 -1.2219 8 7 2.0256 3.5409 -1.2562 9 6 1.3140 4.6271 -0.5780 10 6 3.2101 3.8023 -1.9313 11 6 3.7648 2.8204 -2.7574 12 6 4.9473 3.0836 -3.4309 13 6 5.5432 4.3218 -3.2674 14 6 4.9395 5.2654 -2.4185 15 6 5.5396 6.5319 -2.2374 16 1 6.3891 6.8181 -2.8398 17 6 5.0328 7.4159 -1.2769 18 7 4.1056 7.0170 -0.4459 19 14 5.6870 9.1628 -1.1777 20 1 6.7688 9.2293 -0.1626 21 1 6.2253 9.5656 -2.5018 22 1 4.5871 10.0820 -0.7900 23 7 3.7981 4.9745 -1.7854 24 1 -0.3634 -1.0227 0.1006 25 1 -0.3634 0.5986 0.8353 26 1 -0.3633 0.4242 -0.9361 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8926 3.0223 1.2583 30 1 3.8998 1.0199 -1.0018 31 1 3.9356 2.4654 0.0363 32 1 5.2090 0.6009 1.0618 33 1 3.7889 1.0239 2.0485 34 1 3.7531 -0.4215 1.0105 35 1 0.3996 2.2195 -1.1603 36 1 1.7802 1.6495 -2.1286 37 1 0.6761 5.1460 -1.2935 38 1 0.7008 4.2151 0.2234 39 1 2.0356 5.3286 -0.1594 40 1 3.2759 1.8639 -2.8697 41 1 5.3920 2.3388 -4.0742 42 1 6.4625 4.5585 -3.7824 43 1 3.7574 7.6280 0.2220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331556255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:57 Heat of formation + Delta-G solvation = -31.471091 kcal Electronic energy + Delta-G solvation = -23111.596458 eV Core-core repulsion = 19963.020611 eV Total energy + Delta-G solvation = -3148.575847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88120 -39.41740 -36.53291 -35.15567 -34.50594 -32.71534 -32.29526 -31.13266 -29.52043 -27.63555 -26.10921 -25.06856 -23.76439 -23.05930 -21.72096 -20.72129 -19.32386 -17.81127 -17.44490 -16.80013 -16.56052 -16.14602 -16.07314 -15.60231 -15.14163 -14.90174 -14.58051 -14.46364 -14.28372 -13.99557 -13.64923 -13.53555 -13.09313 -12.92761 -12.82857 -12.73430 -12.65769 -12.60947 -12.50516 -12.23557 -12.06414 -11.84916 -11.72524 -11.67453 -11.31374 -11.18428 -10.87684 -10.30450 -9.76543 -9.34952 -8.28479 -8.08386 -6.42238 1.07689 1.37173 1.41943 1.53591 1.58445 2.25601 2.42141 2.93057 3.31566 3.85881 3.92754 3.95673 4.13466 4.24736 4.35195 4.41293 4.51765 4.58280 4.61613 4.66543 4.72213 4.83911 4.86211 4.90582 5.00488 5.01635 5.03612 5.11507 5.14326 5.21798 5.29346 5.35222 5.35776 5.38740 5.45911 5.54334 5.76770 6.00008 6.13650 6.18095 6.60831 6.66825 6.74502 6.92309 7.22740 8.35531 8.52176 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.005496 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.072344 B = 5093.092299 C = 5501.954695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C 0.125 3.875 4 O -0.564 6.564 5 C -0.137 4.137 6 C -0.141 4.141 7 C 0.107 3.893 8 N -0.621 5.621 9 C 0.106 3.894 10 C 0.402 3.598 11 C -0.355 4.355 12 C -0.031 4.031 13 C -0.348 4.348 14 C 0.263 3.737 15 C -0.476 4.476 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.748 5.748 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.261 1.261 22 H -0.268 1.268 23 N -0.556 5.556 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.373 0.627 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 -9.800 2.565 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C 0.083 3.917 4 O -0.371 6.371 5 C -0.175 4.175 6 C -0.198 4.198 7 C -0.016 4.016 8 N -0.338 5.338 9 C -0.037 4.037 10 C 0.163 3.837 11 C -0.380 4.380 12 C -0.056 4.056 13 C -0.371 4.371 14 C 0.136 3.864 15 C -0.508 4.508 16 H 0.098 0.902 17 C -0.187 4.187 18 N -0.370 5.370 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.185 1.185 22 H -0.193 1.193 23 N -0.278 5.278 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.222 0.778 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.114 0.886 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.109 -9.722 3.448 12.527 hybrid contribution 1.235 0.992 -0.726 1.742 sum -5.874 -8.730 2.722 10.869 Atomic orbital electron populations 1.21736 0.94615 1.02164 1.01932 1.21549 0.97167 0.92338 1.03329 1.21759 0.91986 0.93441 0.84559 1.86387 1.78656 1.29743 1.42314 1.22085 0.96365 0.99406 0.99672 1.21711 0.99883 1.00334 0.97853 1.22241 0.98717 0.81888 0.98794 1.46088 1.22346 1.07821 1.57533 1.21429 0.96125 0.90450 0.95702 1.18779 0.86240 0.90651 0.88038 1.20933 1.03412 1.01816 1.11883 1.20969 0.93914 0.95168 0.95519 1.21661 1.05106 0.97479 1.12812 1.18595 0.87583 0.92933 0.87252 1.19842 1.13914 0.98972 1.18086 0.90150 1.26774 0.94185 1.03974 0.93751 1.70109 1.19356 1.36578 1.10970 0.85252 0.78698 0.76544 0.79499 1.18957 1.18489 1.19278 1.68098 1.12332 1.18610 1.28710 0.91425 0.93059 0.92381 0.89531 0.90759 0.77835 0.91330 0.95198 0.93711 0.93325 0.90731 0.89160 0.89907 0.95856 0.90331 0.91598 0.86299 0.85716 0.88594 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.27 71.98 0.67 -2.12 16 2 C -0.11 -2.27 4.65 30.59 0.14 -2.13 16 3 C 0.12 3.43 0.58 -10.79 -0.01 3.43 16 4 O -0.56 -16.73 11.45 -148.98 -1.71 -18.44 16 5 C -0.14 -4.40 3.81 30.60 0.12 -4.29 16 6 C -0.14 -3.88 9.32 71.98 0.67 -3.21 16 7 C 0.11 3.16 4.21 86.38 0.36 3.52 16 8 N -0.62 -23.64 2.52 -728.73 -1.84 -25.48 16 9 C 0.11 3.93 9.51 127.77 1.22 5.14 16 10 C 0.40 18.78 5.70 133.42 0.76 19.54 16 11 C -0.36 -15.30 7.54 22.73 0.17 -15.13 16 12 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 13 C -0.35 -17.74 9.83 22.87 0.22 -17.51 16 14 C 0.26 14.84 6.52 40.18 0.26 15.10 16 15 C -0.48 -26.40 9.13 23.46 0.21 -26.18 16 16 H 0.08 4.26 7.86 -2.91 -0.02 4.23 16 17 C 0.04 1.81 5.47 85.29 0.47 2.28 16 18 N -0.75 -39.31 11.31 21.84 0.25 -39.06 16 19 Si 0.98 38.66 29.57 68.60 2.03 40.69 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 23 N -0.56 -30.20 6.77 -186.60 -1.26 -31.46 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.11 7.58 -2.39 -0.02 1.09 16 26 H 0.06 1.04 6.78 -2.39 -0.02 1.03 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.57 6.47 -2.39 -0.02 1.55 16 29 H 0.37 11.73 6.79 -74.06 -0.50 11.23 16 30 H 0.07 2.22 6.61 -2.38 -0.02 2.20 16 31 H 0.03 1.23 6.67 -2.39 -0.02 1.21 16 32 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 34 H 0.07 1.69 6.39 -2.39 -0.02 1.67 16 35 H 0.09 2.35 6.60 -2.39 -0.02 2.34 16 36 H 0.08 2.38 5.80 -2.39 -0.01 2.37 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 2.34 6.72 -2.39 -0.02 2.33 16 39 H 0.07 2.90 7.13 -2.39 -0.02 2.88 16 40 H 0.12 4.38 5.44 -2.91 -0.02 4.36 16 41 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 43 H 0.28 13.17 8.29 -92.72 -0.77 12.40 16 Total: -1.00 -62.01 330.26 3.47 -58.54 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.51 Total: 37.95 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 5.50 Total: -22.74 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -2.85 Total: -96.00 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.71 Total: -18.44 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -62.01 3.47 -58.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331556255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.069 kcal (2) G-P(sol) polarization free energy of solvation -62.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds