Wall clock time and date at job start Tue Mar 31 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50691 * 109.47056 * 2 1 4 4 C 1.32993 * 120.00256 * 181.77588 * 3 2 1 5 5 C 1.50696 * 120.00583 * 183.23927 * 4 3 2 6 6 C 1.47108 * 119.99703 * 3.23064 * 4 3 2 7 7 O 1.21613 * 119.99721 * 357.88277 * 6 4 3 8 8 N 1.34774 * 120.00004 * 177.87351 * 6 4 3 9 9 C 1.46496 * 120.00296 * 180.02562 * 8 6 4 10 10 C 1.50701 * 109.47473 * 180.02562 * 9 8 6 11 11 C 1.29450 * 117.69396 * 95.00010 * 10 9 8 12 12 C 1.50327 * 123.65035 * 181.13987 * 11 10 9 13 13 N 1.47107 * 109.10632 * 348.53766 * 12 11 10 14 14 C 1.36933 * 121.51350 * 223.15863 * 13 12 11 15 15 H 1.08001 * 119.99905 * 162.77099 * 14 13 12 16 16 C 1.38810 * 119.99993 * 342.76966 * 14 13 12 17 17 N 1.31623 * 119.99961 * 331.67377 * 16 14 13 18 18 Si 1.86808 * 120.00106 * 151.67755 * 16 14 13 19 19 H 1.48500 * 109.47216 * 94.99689 * 18 16 14 20 20 H 1.48496 * 109.46918 * 214.99475 * 18 16 14 21 21 H 1.48494 * 109.46812 * 334.99618 * 18 16 14 22 22 C 1.47341 * 117.11146 * 43.34827 * 13 12 11 23 23 C 1.49962 * 117.69132 * 274.97725 * 10 9 8 24 24 H 1.09000 * 109.46491 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46766 * 299.99957 * 1 2 3 26 26 H 1.08998 * 109.46783 * 59.99933 * 1 2 3 27 27 H 1.09002 * 109.46762 * 240.00387 * 2 1 3 28 28 H 1.08995 * 109.47229 * 120.00686 * 2 1 3 29 29 H 1.08000 * 120.00477 * 1.76961 * 3 2 1 30 30 H 1.08999 * 109.47271 * 269.99774 * 5 4 3 31 31 H 1.09000 * 109.47353 * 29.99572 * 5 4 3 32 32 H 1.08999 * 109.47811 * 149.99462 * 5 4 3 33 33 H 0.97004 * 120.00034 * 0.02562 * 8 6 4 34 34 H 1.09001 * 109.47156 * 60.00331 * 9 8 6 35 35 H 1.09009 * 109.46950 * 300.00642 * 9 8 6 36 36 H 1.07997 * 118.17615 * 0.86076 * 11 10 9 37 37 H 1.08996 * 109.52130 * 108.65043 * 12 11 10 38 38 H 1.08997 * 109.51966 * 228.83888 * 12 11 10 39 39 H 0.96998 * 119.99594 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.77860 * 178.42863 * 22 13 12 41 41 H 1.09002 * 109.77958 * 57.62317 * 22 13 12 42 42 H 1.08993 * 109.31906 * 281.28758 * 23 10 9 43 43 H 1.09005 * 109.31946 * 40.72246 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 3.3394 1.6640 -0.0357 5 6 3.8443 3.0819 0.0380 6 6 4.2923 0.5488 -0.1469 7 8 3.8869 -0.5976 -0.1674 8 7 5.6145 0.7976 -0.2263 9 6 6.5635 -0.3129 -0.3376 10 6 7.9671 0.2310 -0.4094 11 6 8.6401 0.3067 0.6938 12 6 10.0391 0.8499 0.7804 13 7 10.5814 1.0027 -0.5785 14 6 11.8623 0.6276 -0.8843 15 1 12.1516 0.4845 -1.9150 16 6 12.7890 0.4314 0.1303 17 7 12.6761 1.0940 1.2620 18 14 14.1966 -0.7730 -0.1104 19 1 15.3989 -0.0411 -0.5838 20 1 14.5009 -1.4428 1.1796 21 1 13.8089 -1.7924 -1.1181 22 6 9.6876 1.5813 -1.5970 23 6 8.4858 0.6458 -1.7539 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.3310 2.2415 0.0289 30 1 3.9255 3.4915 -0.9689 31 1 3.1485 3.6856 0.6207 32 1 4.8241 3.0945 0.5154 33 1 5.9378 1.7120 -0.2097 34 1 6.3487 -0.8853 -1.2400 35 1 6.4691 -0.9602 0.5344 36 1 8.1687 -0.0354 1.6032 37 1 10.0236 1.8179 1.2812 38 1 10.6645 0.1574 1.3437 39 1 13.3235 0.9566 1.9711 40 1 10.2161 1.6654 -2.5466 41 1 9.3490 2.5658 -1.2741 42 1 8.7888 -0.2398 -2.3124 43 1 7.6967 1.1614 -2.3015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333305233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:06 Heat of formation + Delta-G solvation = 6.125920 kcal Electronic energy + Delta-G solvation = -21420.912391 eV Core-core repulsion = 18273.966873 eV Total energy + Delta-G solvation = -3146.945518 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.96148 -37.89065 -35.73501 -34.86862 -33.21846 -32.18835 -30.83077 -29.77341 -27.23817 -26.95804 -24.50877 -23.02194 -22.68945 -21.77767 -21.00831 -19.44375 -17.66268 -16.55134 -16.08833 -15.67330 -15.41254 -14.99780 -14.40559 -14.22359 -14.04571 -13.80512 -13.67169 -13.46744 -13.33803 -12.88107 -12.79885 -12.64469 -12.28800 -12.08279 -11.80835 -11.56924 -11.47508 -11.30454 -11.23262 -11.02964 -10.69634 -10.46376 -10.34895 -9.81685 -9.69689 -9.56874 -9.26114 -8.79974 -8.61483 -8.09860 -6.89087 -5.86919 -3.11900 1.30388 2.58368 3.27084 3.37438 3.46348 3.50310 3.61105 4.49610 4.55287 4.70377 4.99801 5.07457 5.11822 5.20203 5.27400 5.27677 5.34895 5.40855 5.50550 5.56256 5.70761 5.80443 5.85422 5.91872 5.98777 6.02448 6.07444 6.13453 6.26130 6.29311 6.43206 6.46357 6.55949 6.68543 6.81400 7.08982 7.16474 7.26195 7.64295 7.68130 7.79018 8.28587 8.30142 9.12892 9.79916 10.35992 11.24233 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041045 B = 0.003094 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.008016 B = 9047.990201 C = 9210.560912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C -0.070 4.070 4 C -0.194 4.194 5 C -0.116 4.116 6 C 0.545 3.455 7 O -0.545 6.545 8 N -0.717 5.717 9 C 0.157 3.843 10 C -0.164 4.164 11 C -0.125 4.125 12 C 0.191 3.809 13 N -0.594 5.594 14 C -0.250 4.250 15 H 0.072 0.928 16 C 0.000 4.000 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.144 3.856 23 C -0.090 4.090 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.038 2.746 -1.916 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.131 4.131 3 C -0.090 4.090 4 C -0.197 4.197 5 C -0.173 4.173 6 C 0.334 3.666 7 O -0.425 6.425 8 N -0.369 5.369 9 C 0.035 3.965 10 C -0.164 4.164 11 C -0.146 4.146 12 C 0.066 3.934 13 N -0.318 5.318 14 C -0.379 4.379 15 H 0.090 0.910 16 C -0.198 4.198 17 N -0.543 5.543 18 Si 0.721 3.279 19 H -0.216 1.216 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.018 3.982 23 C -0.129 4.129 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.161 1.910 -1.802 20.331 hybrid contribution 0.932 -0.141 0.068 0.945 sum -19.229 1.769 -1.734 19.387 Atomic orbital electron populations 1.21913 0.96291 1.01757 1.01377 1.20815 0.94370 0.93575 1.04363 1.23686 0.94510 0.98794 0.92009 1.21525 0.94417 0.95378 1.08363 1.20779 1.01811 0.92189 1.02503 1.18444 0.82499 0.88892 0.76777 1.90762 1.78346 1.22644 1.50731 1.46153 1.05774 1.10826 1.74126 1.20440 0.86188 0.88269 1.01635 1.20512 0.94029 1.05508 0.96374 1.23197 0.98914 0.96078 0.96373 1.19753 0.87590 0.98630 0.87436 1.44245 1.10299 1.71830 1.05380 1.19136 0.86172 1.39495 0.93090 0.91028 1.24757 0.97500 1.00268 0.97294 1.70174 1.37566 1.39368 1.07154 0.86441 0.82157 0.82170 0.77159 1.21588 1.21524 1.20480 1.20941 0.90489 0.93301 0.93509 1.20758 0.98237 1.00395 0.93546 0.92580 0.92950 0.92927 0.89226 0.89712 0.85948 0.91072 0.91248 0.91420 0.76354 0.91616 0.91696 0.88702 0.94196 0.89134 0.93635 0.92385 0.95960 0.91624 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.85 37.16 0.37 -0.86 16 2 C -0.09 -0.99 4.51 -27.88 -0.13 -1.12 16 3 C -0.07 -0.67 9.25 -36.13 -0.33 -1.01 16 4 C -0.19 -2.07 6.00 -102.85 -0.62 -2.69 16 5 C -0.12 -0.94 9.57 36.00 0.34 -0.60 16 6 C 0.54 7.52 7.72 -12.66 -0.10 7.43 16 7 O -0.54 -9.00 13.08 5.27 0.07 -8.93 16 8 N -0.72 -9.55 5.49 -62.67 -0.34 -9.89 16 9 C 0.16 2.37 5.66 -5.20 -0.03 2.34 16 10 C -0.16 -2.77 5.22 -100.99 -0.53 -3.30 16 11 C -0.12 -2.34 9.47 -35.78 -0.34 -2.68 16 12 C 0.19 4.43 5.42 -5.04 -0.03 4.40 16 13 N -0.59 -14.61 3.02 -173.59 -0.52 -15.13 16 14 C -0.25 -6.80 9.67 -15.06 -0.15 -6.95 16 15 H 0.07 1.91 7.96 -52.49 -0.42 1.49 16 16 C 0.00 0.00 4.73 -17.43 -0.08 -0.08 16 17 N -0.90 -25.70 11.47 55.49 0.64 -25.07 16 18 Si 0.89 21.51 29.64 -169.99 -5.04 16.47 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.14 2.90 6.57 -3.53 -0.02 2.88 16 23 C -0.09 -1.55 5.95 -28.18 -0.17 -1.71 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 1.11 6.96 -51.93 -0.36 0.75 16 28 H 0.08 1.02 7.47 -51.93 -0.39 0.63 16 29 H 0.12 0.86 7.99 -52.49 -0.42 0.44 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.07 0.55 6.79 -51.93 -0.35 0.20 16 33 H 0.40 4.74 6.61 -40.82 -0.27 4.47 16 34 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.06 1.02 7.78 -51.92 -0.40 0.61 16 36 H 0.09 1.60 7.73 -52.49 -0.41 1.20 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 2.35 6.32 -51.93 -0.33 2.02 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -30.28 346.79 -8.90 -39.18 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.12 Total: 2.08 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.81 Total: -3.94 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.23 Total: -50.09 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.04 Total: 16.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.28 -8.90 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333305233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.303 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds