Wall clock time and date at job start Tue Mar 31 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50709 * 119.99743 * 2 1 4 4 C 1.53001 * 109.46715 * 124.99864 * 3 2 1 5 5 C 1.52998 * 109.46521 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47008 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99737 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00183 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00062 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.46943 * 180.02562 * 9 8 6 11 11 C 1.29459 * 117.69855 * 94.99994 * 10 9 8 12 12 C 1.50316 * 123.65508 * 181.13441 * 11 10 9 13 13 N 1.47112 * 109.10903 * 348.54409 * 12 11 10 14 14 C 1.36938 * 121.51017 * 223.15910 * 13 12 11 15 15 H 1.07995 * 119.99619 * 156.18843 * 14 13 12 16 16 C 1.38811 * 120.00085 * 336.18389 * 14 13 12 17 17 N 1.31620 * 119.99972 * 344.47639 * 16 14 13 18 18 Si 1.86793 * 120.00126 * 164.48385 * 16 14 13 19 19 H 1.48499 * 109.47570 * 89.99770 * 18 16 14 20 20 H 1.48500 * 109.47362 * 209.99960 * 18 16 14 21 21 H 1.48506 * 109.46962 * 329.99743 * 18 16 14 22 22 C 1.47337 * 117.11209 * 43.34223 * 13 12 11 23 23 C 1.49969 * 117.69430 * 274.97585 * 10 9 8 24 24 H 1.07993 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99743 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00410 * 179.97438 * 2 1 3 27 27 H 1.08991 * 109.46842 * 4.99809 * 3 2 1 28 28 H 1.08996 * 109.47013 * 244.99250 * 3 2 1 29 29 H 1.08997 * 109.47864 * 60.00084 * 4 3 2 30 30 H 1.09002 * 109.47239 * 299.99750 * 4 3 2 31 31 H 1.08998 * 109.47442 * 60.00161 * 5 4 3 32 32 H 1.08993 * 109.47408 * 299.99268 * 5 4 3 33 33 H 0.97001 * 120.00055 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46850 * 60.00101 * 9 8 6 35 35 H 1.08996 * 109.46793 * 299.99587 * 9 8 6 36 36 H 1.08004 * 118.16890 * 0.85747 * 11 10 9 37 37 H 1.09007 * 109.52102 * 108.65128 * 12 11 10 38 38 H 1.08999 * 109.52662 * 228.83517 * 12 11 10 39 39 H 0.97000 * 119.99856 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.77655 * 178.43578 * 22 13 12 41 41 H 1.08997 * 109.77795 * 57.62591 * 22 13 12 42 42 H 1.09000 * 109.31763 * 281.28924 * 23 10 9 43 43 H 1.09005 * 109.31493 * 40.72379 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7994 2.6585 1.1820 6 6 4.7559 2.6864 2.3463 7 8 4.8195 1.7396 3.1017 8 7 5.5407 3.7633 2.5481 9 6 6.4701 3.7907 3.6803 10 6 7.2231 5.0960 3.6805 11 6 6.7627 6.0562 4.4168 12 6 7.3922 7.4187 4.4983 13 7 8.7135 7.3781 3.8528 14 6 9.8037 7.9870 4.4149 15 1 10.7988 7.6481 4.1674 16 6 9.6297 9.0398 5.3027 17 7 8.4677 9.6535 5.3763 18 14 11.0449 9.5858 6.3929 19 1 11.8334 10.6320 5.6937 20 1 10.5074 10.1369 7.6628 21 1 11.9190 8.4223 6.6890 22 6 8.8132 6.6570 2.5718 23 6 8.4535 5.1910 2.8283 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6214 1.4027 -0.9313 29 1 3.7400 0.5067 1.0922 30 1 2.4771 1.2357 2.1131 31 1 3.0942 3.4847 1.2718 32 1 4.3573 2.7564 0.2508 33 1 5.4896 4.5207 1.9442 34 1 7.1750 2.9641 3.5916 35 1 5.9115 3.6937 4.6112 36 1 5.8742 5.8691 5.0017 37 1 6.7570 8.1444 3.9904 38 1 7.5089 7.7042 5.5438 39 1 8.3460 10.3889 5.9970 40 1 9.8312 6.7253 2.1884 41 1 8.1173 7.0869 1.8514 42 1 9.2831 4.6999 3.3368 43 1 8.2719 4.6925 1.8761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333391621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:11 Heat of formation + Delta-G solvation = -17.035220 kcal Electronic energy + Delta-G solvation = -20837.460699 eV Core-core repulsion = 17689.510838 eV Total energy + Delta-G solvation = -3147.949861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83202 -39.35484 -36.94906 -36.31699 -34.52463 -33.33138 -32.52367 -31.42788 -29.11606 -27.70781 -25.73082 -24.38299 -23.19500 -22.59107 -21.27425 -20.63936 -19.49894 -18.30538 -17.33224 -17.12550 -16.90886 -16.84401 -16.07828 -15.69678 -15.55137 -15.21475 -15.00549 -14.77600 -14.33207 -14.27210 -13.93627 -13.69689 -13.29283 -13.19418 -12.92753 -12.79784 -12.59000 -12.57893 -12.42699 -12.24592 -12.10426 -11.74680 -11.70989 -11.60061 -11.28362 -10.93883 -10.68518 -10.17058 -10.06630 -9.64460 -8.75564 -7.89113 -5.29862 1.19093 1.44453 1.46329 1.48284 1.57410 1.69465 2.49768 2.50914 3.28287 3.62293 3.80955 3.88487 3.92107 3.96853 4.10742 4.35392 4.40951 4.44147 4.53115 4.60996 4.70321 4.70985 4.77467 4.81243 4.84891 4.92500 4.96660 5.09963 5.10582 5.21187 5.25934 5.36929 5.40851 5.47878 5.48663 5.61055 5.76920 5.80680 5.93233 6.16441 6.33481 6.61784 7.12908 7.29687 7.83042 8.36888 9.19518 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050576 B = 0.002534 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.493332 B =11047.292373 C =11116.647736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.090 4.090 4 C -0.096 4.096 5 C -0.133 4.133 6 C 0.505 3.495 7 O -0.593 6.593 8 N -0.715 5.715 9 C 0.166 3.834 10 C -0.138 4.138 11 C -0.143 4.143 12 C 0.204 3.796 13 N -0.616 5.616 14 C -0.256 4.256 15 H 0.070 0.930 16 C -0.056 4.056 17 N -0.939 5.939 18 Si 0.968 3.032 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.138 3.862 23 C -0.084 4.084 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.414 0.586 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.016 0.984 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 -14.681 -12.118 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.184 4.184 3 C -0.127 4.127 4 C -0.134 4.134 5 C -0.172 4.172 6 C 0.294 3.706 7 O -0.474 6.474 8 N -0.367 5.367 9 C 0.042 3.958 10 C -0.138 4.138 11 C -0.164 4.164 12 C 0.079 3.921 13 N -0.340 5.340 14 C -0.386 4.386 15 H 0.088 0.912 16 C -0.250 4.250 17 N -0.586 5.586 18 Si 0.796 3.204 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.013 3.987 23 C -0.122 4.122 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.972 -15.217 -11.483 22.511 hybrid contribution 0.662 0.978 0.820 1.438 sum -11.309 -14.239 -10.664 21.080 Atomic orbital electron populations 1.24016 0.96003 1.02477 1.01209 1.23104 0.96393 0.98989 0.99873 1.20772 0.98000 0.95514 0.98428 1.21208 0.97571 0.96160 0.98430 1.21746 0.97881 1.00995 0.96594 1.21484 0.80969 0.81283 0.86887 1.90682 1.69945 1.37210 1.49536 1.46110 1.40009 1.20129 1.30403 1.20183 0.91028 0.95114 0.89432 1.20611 0.97933 0.94332 1.00969 1.22940 0.99360 0.96146 0.97934 1.19424 0.84851 0.90396 0.97401 1.44443 1.06349 1.62065 1.21112 1.19500 0.87359 1.09667 1.22078 0.91197 1.25739 0.99396 0.96663 1.03242 1.70160 1.25233 1.23883 1.39320 0.85269 0.78978 0.78015 0.78158 1.21050 1.22002 1.19758 1.21154 0.99363 0.91094 0.87110 1.20694 0.94858 0.97791 0.98896 0.87997 0.88021 0.87499 0.90516 0.89539 0.92493 0.93146 0.86670 0.86138 0.74981 0.91658 0.92492 0.87123 0.96643 0.92572 0.94121 0.92253 0.95238 0.92024 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.17 -2.24 9.52 25.65 0.24 -2.00 16 3 C -0.09 -1.07 5.66 29.85 0.17 -0.90 16 4 C -0.10 -1.55 4.49 30.59 0.14 -1.42 16 5 C -0.13 -1.88 5.70 29.85 0.17 -1.71 16 6 C 0.51 11.84 7.83 87.66 0.69 12.53 16 7 O -0.59 -19.37 15.98 -3.05 -0.05 -19.42 16 8 N -0.71 -15.94 5.55 -466.78 -2.59 -18.53 16 9 C 0.17 4.58 5.66 85.63 0.48 5.06 16 10 C -0.14 -4.37 5.22 -15.14 -0.08 -4.45 16 11 C -0.14 -5.28 9.47 27.10 0.26 -5.03 16 12 C 0.20 9.75 5.25 85.40 0.45 10.19 16 13 N -0.62 -30.45 3.01 -703.12 -2.12 -32.56 16 14 C -0.26 -13.99 9.71 84.03 0.82 -13.17 16 15 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 16 C -0.06 -3.10 5.01 84.86 0.43 -2.67 16 17 N -0.94 -55.09 11.07 21.65 0.24 -54.85 16 18 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C 0.14 5.37 6.57 86.26 0.57 5.94 16 23 C -0.08 -2.63 5.95 29.66 0.18 -2.45 16 24 H 0.10 1.12 7.84 -2.91 -0.02 1.09 16 25 H 0.10 1.10 8.06 -2.91 -0.02 1.07 16 26 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 27 H 0.08 0.78 7.79 -2.39 -0.02 0.77 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.41 7.38 8.46 -92.71 -0.78 6.60 16 34 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 35 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 36 H 0.11 3.67 7.73 -2.91 -0.02 3.65 16 37 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 3.06 6.40 -2.39 -0.02 3.05 16 39 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -68.18 354.44 3.17 -65.01 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.18 Total: 15.04 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.47 Total: -1.60 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.47 Total: -105.94 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.18 3.17 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333391621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.978 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds