Wall clock time and date at job start Mon Mar 30 2020 23:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34513 * 126.58064 * 2 1 4 4 O 1.34300 * 108.42113 * 179.97438 * 3 2 1 5 5 C 1.34312 * 109.47791 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.78938 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47150 * 270.02451 * 6 5 4 8 8 C 1.46899 * 111.00040 * 170.00211 * 7 6 5 9 9 C 1.53238 * 109.33778 * 187.25269 * 8 7 6 10 10 H 1.08993 * 109.63034 * 66.07449 * 9 8 7 11 11 C 1.53005 * 109.62585 * 186.46214 * 9 8 7 12 12 N 1.47074 * 108.52072 * 306.16808 * 9 8 7 13 13 C 1.36938 * 120.88231 * 231.20551 * 12 9 8 14 14 H 1.08003 * 119.99626 * 52.72956 * 13 12 9 15 15 C 1.38811 * 120.00324 * 232.73134 * 13 12 9 16 16 N 1.31617 * 119.99817 * 18.80633 * 15 13 12 17 17 Si 1.86802 * 120.00255 * 198.80822 * 15 13 12 18 18 H 1.48510 * 109.46886 * 60.00091 * 17 15 13 19 19 H 1.48493 * 109.47389 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47275 * 300.00533 * 17 15 13 21 21 C 1.47076 * 118.23922 * 51.19148 * 12 9 8 22 22 H 1.08998 * 109.63137 * 68.51942 * 21 12 9 23 23 C 1.53005 * 109.62908 * 189.10390 * 21 12 9 24 24 C 1.46901 * 110.99810 * 294.30104 * 7 6 5 25 25 C 1.34509 * 108.41542 * 359.71867 * 5 4 3 26 26 H 1.09000 * 109.47311 * 90.02068 * 1 2 3 27 27 H 1.08997 * 109.47138 * 210.02269 * 1 2 3 28 28 H 1.08996 * 109.47135 * 330.02401 * 1 2 3 29 29 H 1.07999 * 125.78945 * 0.03830 * 3 2 1 30 30 H 1.09000 * 109.47704 * 30.02335 * 6 5 4 31 31 H 1.09005 * 109.47125 * 150.02872 * 6 5 4 32 32 H 1.08997 * 109.49473 * 307.21527 * 8 7 6 33 33 H 1.09008 * 109.49135 * 67.29179 * 8 7 6 34 34 H 1.08994 * 109.47403 * 59.99917 * 11 9 8 35 35 H 1.08994 * 109.47244 * 180.02562 * 11 9 8 36 36 H 1.09007 * 109.46701 * 299.99887 * 11 9 8 37 37 H 0.97005 * 119.99976 * 182.59848 * 16 15 13 38 38 H 1.08998 * 109.47517 * 52.02359 * 23 21 12 39 39 H 1.09007 * 109.46708 * 172.02392 * 23 21 12 40 40 H 1.09000 * 109.46926 * 292.01585 * 23 21 12 41 41 H 1.09000 * 109.49581 * 292.71094 * 24 7 6 42 42 H 1.08999 * 109.49170 * 52.78702 * 24 7 6 43 43 H 1.08003 * 126.57632 * 180.26301 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6616 0.0006 5 6 3.6156 -0.6812 0.0004 6 6 4.8580 -1.5341 0.0003 7 7 5.2621 -1.8106 -1.3848 8 6 6.5913 -2.4343 -1.4308 9 6 7.0520 -2.5399 -2.8885 10 1 7.2063 -1.5413 -3.2971 11 6 8.3596 -3.3314 -2.9581 12 7 6.0107 -3.2375 -3.6581 13 6 6.3222 -4.3099 -4.4506 14 1 6.8719 -5.1437 -4.0393 15 6 5.9314 -4.3255 -5.7825 16 7 5.6035 -3.2023 -6.3853 17 14 5.8708 -5.9405 -6.7194 18 1 4.9156 -6.8629 -6.0544 19 1 5.4253 -5.6878 -8.1132 20 1 7.2227 -6.5547 -6.7349 21 6 4.6261 -2.7528 -3.5538 22 1 4.5438 -1.7746 -4.0274 23 6 3.6822 -3.7419 -4.2408 24 6 4.2608 -2.6388 -2.0699 25 6 2.3495 -1.1353 0.0059 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.9815 2.1094 0.0006 30 1 5.6612 -1.0063 0.5146 31 1 4.6536 -2.4738 0.5136 32 1 7.2989 -1.8246 -0.8690 33 1 6.5408 -3.4309 -0.9921 34 1 8.2008 -4.3317 -2.5553 35 1 8.6852 -3.4047 -3.9957 36 1 9.1246 -2.8212 -2.3728 37 1 5.2943 -3.2176 -7.3046 38 1 3.8631 -4.7450 -3.8547 39 1 2.6492 -3.4566 -4.0414 40 1 3.8617 -3.7284 -5.3159 41 1 4.2428 -3.6325 -1.6223 42 1 3.2782 -2.1774 -1.9716 43 1 2.0366 -2.1690 0.0113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334384727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:29 Heat of formation + Delta-G solvation = 44.173573 kcal Electronic energy + Delta-G solvation = -22779.889504 eV Core-core repulsion = 19634.593856 eV Total energy + Delta-G solvation = -3145.295648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41409 -38.42812 -35.10123 -33.96041 -32.81454 -31.56148 -30.37005 -27.87768 -27.26388 -25.99253 -25.77095 -24.26255 -21.72347 -21.05950 -20.29049 -19.32634 -19.04183 -16.86935 -16.31220 -15.97275 -15.10142 -14.92859 -14.45727 -14.26869 -14.04446 -13.69812 -13.35685 -13.16347 -13.12409 -12.80987 -12.48116 -12.23035 -12.03016 -11.86639 -11.54346 -11.39191 -11.25523 -10.98014 -10.76070 -10.61839 -10.47250 -10.35584 -10.10501 -9.80342 -9.70488 -9.42511 -9.36857 -8.27927 -8.09959 -7.80968 -6.31075 -5.67703 -3.48430 1.88164 2.68984 3.18283 3.35203 3.41644 3.43803 4.43008 4.49854 4.80668 4.97343 5.09214 5.29484 5.34290 5.39507 5.41355 5.58767 5.61040 5.81104 5.85937 5.87864 5.92587 6.12649 6.17018 6.19373 6.25226 6.32721 6.42465 6.46700 6.51147 6.62952 6.68088 6.76746 6.88238 7.00267 7.18568 7.24221 7.33047 7.53227 7.57749 7.70145 7.78590 7.91798 8.65647 9.26418 9.79718 10.59090 11.23061 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.005029 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.207881 B = 5566.316870 C = 6355.707479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C -0.051 4.051 4 O -0.168 6.168 5 C 0.017 3.983 6 C 0.128 3.872 7 N -0.530 5.530 8 C 0.050 3.950 9 C 0.172 3.828 10 H 0.032 0.968 11 C -0.129 4.129 12 N -0.579 5.579 13 C -0.262 4.262 14 H 0.051 0.949 15 C 0.036 3.964 16 N -0.874 5.874 17 Si 0.882 3.118 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.201 3.799 22 H 0.034 0.966 23 C -0.142 4.142 24 C 0.039 3.961 25 C -0.209 4.209 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.197 0.803 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.254 0.746 38 H 0.046 0.954 39 H 0.020 0.980 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.064 0.936 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 4.872 12.731 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.184 4.184 3 C -0.119 4.119 4 O -0.063 6.063 5 C -0.034 4.034 6 C 0.000 4.000 7 N -0.255 5.255 8 C -0.079 4.079 9 C 0.065 3.935 10 H 0.050 0.950 11 C -0.187 4.187 12 N -0.303 5.303 13 C -0.392 4.392 14 H 0.068 0.932 15 C -0.167 4.167 16 N -0.514 5.514 17 Si 0.711 3.289 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.095 3.905 22 H 0.052 0.948 23 C -0.200 4.200 24 C -0.090 4.090 25 C -0.229 4.229 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.214 0.786 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.398 5.546 12.277 14.512 hybrid contribution -0.470 -1.568 -0.169 1.646 sum -5.867 3.977 12.108 14.030 Atomic orbital electron populations 1.20133 0.89565 1.02101 1.02023 1.20419 0.97009 0.92838 1.08111 1.23725 0.80455 0.99448 1.08258 1.84021 1.29052 1.22299 1.70949 1.22298 0.96664 0.80614 1.03825 1.20493 0.91941 0.95319 0.92224 1.61891 1.03440 1.48298 1.11843 1.22730 0.88765 0.95996 1.00413 1.20533 0.89430 0.95106 0.88381 0.95007 1.21689 0.95716 0.99312 1.01978 1.44031 1.00232 1.34091 1.51968 1.18611 1.36441 0.95058 0.89083 0.93175 1.25525 0.99149 0.95653 0.96332 1.70140 1.45023 1.24701 1.11530 0.86737 0.78415 0.84761 0.79035 1.20566 1.21541 1.20483 1.20255 0.85315 0.96188 0.88750 0.94774 1.21976 0.94774 0.98595 1.04624 1.22971 0.94145 0.93525 0.98357 1.21432 0.91857 0.99649 1.09974 0.91514 0.91776 0.92002 0.78609 0.89616 0.92282 0.92012 0.95257 0.93283 0.91596 0.94616 0.93560 0.93471 0.96054 0.89351 0.95582 0.91738 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.40 36.00 0.37 -0.43 16 2 C -0.18 -2.39 6.16 -104.74 -0.65 -3.03 16 3 C -0.05 -0.66 12.01 29.42 0.35 -0.30 16 4 O -0.17 -2.62 10.65 5.69 0.06 -2.56 16 5 C 0.02 0.26 6.22 -35.63 -0.22 0.04 16 6 C 0.13 1.94 5.50 -4.97 -0.03 1.91 16 7 N -0.53 -9.83 4.62 -235.75 -1.09 -10.92 16 8 C 0.05 0.92 4.91 -3.70 -0.02 0.90 16 9 C 0.17 3.74 3.66 -67.49 -0.25 3.50 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.13 -2.53 8.18 37.16 0.30 -2.23 16 12 N -0.58 -14.32 2.82 -157.01 -0.44 -14.76 16 13 C -0.26 -6.92 6.78 -15.06 -0.10 -7.02 16 14 H 0.05 1.34 7.14 -52.48 -0.37 0.97 16 15 C 0.04 0.95 3.36 -17.43 -0.06 0.89 16 16 N -0.87 -24.81 11.71 55.49 0.65 -24.16 16 17 Si 0.88 20.92 29.59 -169.99 -5.03 15.89 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.20 4.76 3.14 -67.49 -0.21 4.55 16 22 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.14 -3.29 7.95 37.16 0.30 -2.99 16 24 C 0.04 0.78 4.72 -3.70 -0.02 0.76 16 25 C -0.21 -3.04 9.20 -39.70 -0.37 -3.41 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.17 7.97 -51.93 -0.41 0.75 16 31 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 33 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.05 0.96 7.56 -51.93 -0.39 0.56 16 35 H 0.07 1.43 7.69 -51.93 -0.40 1.03 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.25 7.00 8.32 -40.82 -0.34 6.66 16 38 H 0.05 1.10 7.68 -51.93 -0.40 0.70 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 2.28 4.94 -51.93 -0.26 2.02 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.23 5.92 -51.93 -0.31 0.93 16 43 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -29.52 335.64 -8.55 -38.07 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.17 Total: 0.25 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.59 Total: -6.87 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.88 Total: -49.84 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.06 Total: -2.56 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.52 -8.55 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334384727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.240 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds