Wall clock time and date at job start Mon Mar 30 2020 23:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34513 * 126.58064 * 2 1 4 4 O 1.34300 * 108.42113 * 179.97438 * 3 2 1 5 5 C 1.34312 * 109.47791 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.78938 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47150 * 270.02451 * 6 5 4 8 8 C 1.46899 * 111.00040 * 170.00211 * 7 6 5 9 9 C 1.53238 * 109.33778 * 187.25269 * 8 7 6 10 10 H 1.08993 * 109.63034 * 66.07449 * 9 8 7 11 11 C 1.53005 * 109.62585 * 186.46214 * 9 8 7 12 12 N 1.47074 * 108.52072 * 306.16808 * 9 8 7 13 13 C 1.36938 * 120.88231 * 231.20551 * 12 9 8 14 14 H 1.08003 * 119.99626 * 52.72956 * 13 12 9 15 15 C 1.38811 * 120.00324 * 232.73134 * 13 12 9 16 16 N 1.31617 * 119.99817 * 18.80633 * 15 13 12 17 17 Si 1.86802 * 120.00255 * 198.80822 * 15 13 12 18 18 H 1.48510 * 109.46886 * 60.00091 * 17 15 13 19 19 H 1.48493 * 109.47389 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47275 * 300.00533 * 17 15 13 21 21 C 1.47076 * 118.23922 * 51.19148 * 12 9 8 22 22 H 1.08998 * 109.63137 * 68.51942 * 21 12 9 23 23 C 1.53005 * 109.62908 * 189.10390 * 21 12 9 24 24 C 1.46901 * 110.99810 * 294.30104 * 7 6 5 25 25 C 1.34509 * 108.41542 * 359.71867 * 5 4 3 26 26 H 1.09000 * 109.47311 * 90.02068 * 1 2 3 27 27 H 1.08997 * 109.47138 * 210.02269 * 1 2 3 28 28 H 1.08996 * 109.47135 * 330.02401 * 1 2 3 29 29 H 1.07999 * 125.78945 * 0.03830 * 3 2 1 30 30 H 1.09000 * 109.47704 * 30.02335 * 6 5 4 31 31 H 1.09005 * 109.47125 * 150.02872 * 6 5 4 32 32 H 1.08997 * 109.49473 * 307.21527 * 8 7 6 33 33 H 1.09008 * 109.49135 * 67.29179 * 8 7 6 34 34 H 1.08994 * 109.47403 * 59.99917 * 11 9 8 35 35 H 1.08994 * 109.47244 * 180.02562 * 11 9 8 36 36 H 1.09007 * 109.46701 * 299.99887 * 11 9 8 37 37 H 0.97005 * 119.99976 * 182.59848 * 16 15 13 38 38 H 1.08998 * 109.47517 * 52.02359 * 23 21 12 39 39 H 1.09007 * 109.46708 * 172.02392 * 23 21 12 40 40 H 1.09000 * 109.46926 * 292.01585 * 23 21 12 41 41 H 1.09000 * 109.49581 * 292.71094 * 24 7 6 42 42 H 1.08999 * 109.49170 * 52.78702 * 24 7 6 43 43 H 1.08003 * 126.57632 * 180.26301 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6616 0.0006 5 6 3.6156 -0.6812 0.0004 6 6 4.8580 -1.5341 0.0003 7 7 5.2621 -1.8106 -1.3848 8 6 6.5913 -2.4343 -1.4308 9 6 7.0520 -2.5399 -2.8885 10 1 7.2063 -1.5413 -3.2971 11 6 8.3596 -3.3314 -2.9581 12 7 6.0107 -3.2375 -3.6581 13 6 6.3222 -4.3099 -4.4506 14 1 6.8719 -5.1437 -4.0393 15 6 5.9314 -4.3255 -5.7825 16 7 5.6035 -3.2023 -6.3853 17 14 5.8708 -5.9405 -6.7194 18 1 4.9156 -6.8629 -6.0544 19 1 5.4253 -5.6878 -8.1132 20 1 7.2227 -6.5547 -6.7349 21 6 4.6261 -2.7528 -3.5538 22 1 4.5438 -1.7746 -4.0274 23 6 3.6822 -3.7419 -4.2408 24 6 4.2608 -2.6388 -2.0699 25 6 2.3495 -1.1353 0.0059 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.9815 2.1094 0.0006 30 1 5.6612 -1.0063 0.5146 31 1 4.6536 -2.4738 0.5136 32 1 7.2989 -1.8246 -0.8690 33 1 6.5408 -3.4309 -0.9921 34 1 8.2008 -4.3317 -2.5553 35 1 8.6852 -3.4047 -3.9957 36 1 9.1246 -2.8212 -2.3728 37 1 5.2943 -3.2176 -7.3046 38 1 3.8631 -4.7450 -3.8547 39 1 2.6492 -3.4566 -4.0414 40 1 3.8617 -3.7284 -5.3159 41 1 4.2428 -3.6325 -1.6223 42 1 3.2782 -2.1774 -1.9716 43 1 2.0366 -2.1690 0.0113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334384727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:28 Heat of formation + Delta-G solvation = 26.431723 kcal Electronic energy + Delta-G solvation = -22780.658849 eV Core-core repulsion = 19634.593856 eV Total energy + Delta-G solvation = -3146.064993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.47331 -40.05221 -36.75628 -34.96030 -34.52901 -33.39184 -31.69893 -29.50110 -28.46247 -27.42826 -27.28318 -26.00141 -23.28473 -22.18932 -21.97799 -20.85744 -20.39865 -18.12821 -17.91318 -17.33490 -16.84177 -16.32473 -16.11840 -15.99171 -15.44410 -15.12162 -14.75074 -14.67105 -14.20385 -13.91903 -13.64414 -13.57866 -13.40091 -13.33363 -13.16097 -13.05748 -12.73167 -12.58211 -12.38230 -12.33034 -12.28930 -12.06955 -11.89881 -11.56001 -11.51441 -11.18953 -10.44227 -10.12598 -9.40963 -9.16670 -8.34630 -7.68215 -5.56495 0.81051 1.45526 1.48004 1.53560 1.65605 2.16999 2.50178 3.08282 3.26966 3.59472 3.76602 4.04166 4.11653 4.23288 4.26986 4.28786 4.44281 4.55923 4.59359 4.61081 4.66942 4.74176 4.85069 4.86765 4.87793 4.89041 4.95479 4.97106 5.00807 5.08791 5.19222 5.25173 5.33262 5.48095 5.55053 5.69185 5.71331 5.75144 5.82669 6.15073 6.20229 6.30967 6.59046 7.26644 7.83856 8.58672 9.17481 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.005029 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.207881 B = 5566.316870 C = 6355.707479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.196 4.196 3 C -0.052 4.052 4 O -0.188 6.188 5 C -0.009 4.009 6 C 0.133 3.867 7 N -0.548 5.548 8 C 0.062 3.938 9 C 0.161 3.839 10 H 0.002 0.998 11 C -0.117 4.117 12 N -0.593 5.593 13 C -0.262 4.262 14 H 0.048 0.952 15 C -0.004 4.004 16 N -0.910 5.910 17 Si 0.938 3.062 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.273 1.273 21 C 0.199 3.801 22 H -0.008 1.008 23 C -0.133 4.133 24 C 0.059 3.941 25 C -0.215 4.215 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.232 0.768 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.250 0.750 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 4.729 14.751 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.198 4.198 3 C -0.119 4.119 4 O -0.084 6.084 5 C -0.060 4.060 6 C 0.006 3.994 7 N -0.272 5.272 8 C -0.067 4.067 9 C 0.055 3.945 10 H 0.020 0.980 11 C -0.175 4.175 12 N -0.319 5.319 13 C -0.393 4.393 14 H 0.066 0.934 15 C -0.203 4.203 16 N -0.552 5.552 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.220 1.220 20 H -0.199 1.199 21 C 0.093 3.907 22 H 0.009 0.991 23 C -0.191 4.191 24 C -0.070 4.070 25 C -0.235 4.235 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.248 0.752 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.941 5.392 14.327 16.420 hybrid contribution -0.312 -1.425 -0.768 1.649 sum -6.253 3.967 13.559 15.449 Atomic orbital electron populations 1.20199 0.87438 1.03515 1.02463 1.20842 0.98626 0.92367 1.07941 1.24504 0.79508 1.01111 1.06801 1.84002 1.30537 1.22435 1.71398 1.22403 0.97086 0.80872 1.05590 1.20517 0.92629 0.96225 0.90043 1.61792 1.03156 1.47908 1.14389 1.22535 0.89384 0.96959 0.97796 1.20722 0.89966 0.93578 0.90230 0.98003 1.21563 0.95591 0.99529 1.00817 1.44302 1.01338 1.34002 1.52219 1.18778 1.35731 0.95449 0.89310 0.93435 1.26087 0.99216 0.97994 0.97048 1.70263 1.46715 1.26619 1.11574 0.85848 0.78550 0.81562 0.77545 1.19902 1.22045 1.19890 1.20167 0.85324 0.93995 0.91216 0.99069 1.21832 0.96186 0.98313 1.02753 1.22583 0.94834 0.93976 0.95592 1.21696 0.92071 1.00475 1.09281 0.91455 0.91201 0.89855 0.75202 0.87943 0.90689 0.89042 0.94806 0.93171 0.94463 0.90925 0.94073 0.93853 0.93660 0.92024 0.95427 0.91082 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.40 71.24 0.74 -0.63 16 2 C -0.20 -4.74 6.16 -19.94 -0.12 -4.87 16 3 C -0.05 -1.23 12.01 66.97 0.80 -0.43 16 4 O -0.19 -5.58 10.65 -2.55 -0.03 -5.61 16 5 C -0.01 -0.27 6.22 24.83 0.15 -0.11 16 6 C 0.13 3.73 5.50 85.55 0.47 4.20 16 7 N -0.55 -19.58 4.62 -899.79 -4.16 -23.74 16 8 C 0.06 2.15 4.91 86.38 0.42 2.58 16 9 C 0.16 7.00 3.66 44.96 0.16 7.16 16 10 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 11 C -0.12 -4.50 8.18 71.98 0.59 -3.91 16 12 N -0.59 -29.79 2.82 -650.65 -1.83 -31.62 16 13 C -0.26 -14.02 6.78 84.03 0.57 -13.45 16 14 H 0.05 2.55 7.14 -2.91 -0.02 2.53 16 15 C 0.00 -0.24 3.36 84.86 0.29 0.04 16 16 N -0.91 -53.32 11.71 21.65 0.25 -53.07 16 17 Si 0.94 43.47 29.59 68.60 2.03 45.50 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.20 9.59 3.14 44.96 0.14 9.73 16 22 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 23 C -0.13 -6.22 7.95 71.98 0.57 -5.65 16 24 C 0.06 2.32 4.72 86.38 0.41 2.73 16 25 C -0.22 -5.91 9.20 22.19 0.20 -5.71 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.23 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.10 2.51 7.97 -2.39 -0.02 2.49 16 31 H 0.08 1.87 8.12 -2.38 -0.02 1.86 16 32 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 35 H 0.04 1.61 7.69 -2.39 -0.02 1.59 16 36 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.25 14.25 8.32 -92.70 -0.77 13.48 16 38 H 0.04 2.01 7.68 -2.39 -0.02 1.99 16 39 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 3.24 4.94 -2.39 -0.01 3.23 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 2.66 5.92 -2.39 -0.01 2.65 16 43 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -65.21 335.64 2.64 -62.56 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.97 Total: 14.29 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.41 Total: -8.31 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -5.74 Total: -108.43 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.03 Total: -5.61 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.21 2.64 -62.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334384727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.995 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds