Wall clock time and date at job start Mon Mar 30 2020 23:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34507 * 126.57923 * 2 1 4 4 O 1.34304 * 108.42354 * 180.02562 * 3 2 1 5 5 C 1.34311 * 109.47276 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78673 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46572 * 270.02007 * 6 5 4 8 8 C 1.46897 * 111.00052 * 294.30053 * 7 6 5 9 9 C 1.53234 * 109.34173 * 172.74947 * 8 7 6 10 10 H 1.09008 * 109.79042 * 294.03088 * 9 8 7 11 11 C 1.53002 * 109.63037 * 173.54104 * 9 8 7 12 12 N 1.47080 * 108.52045 * 53.83110 * 9 8 7 13 13 C 1.36937 * 120.88466 * 128.79804 * 12 9 8 14 14 H 1.08003 * 119.99425 * 332.27206 * 13 12 9 15 15 C 1.38810 * 120.00326 * 152.27536 * 13 12 9 16 16 N 1.31614 * 120.00240 * 343.35007 * 15 13 12 17 17 Si 1.86801 * 119.99914 * 163.35633 * 15 13 12 18 18 H 1.48496 * 109.47221 * 89.99607 * 17 15 13 19 19 H 1.48500 * 109.47003 * 209.99731 * 17 15 13 20 20 H 1.48498 * 109.47060 * 329.99620 * 17 15 13 21 21 C 1.47082 * 118.23671 * 308.81641 * 12 9 8 22 22 H 1.09002 * 109.79191 * 170.99005 * 21 12 9 23 23 C 1.52999 * 109.62936 * 291.47515 * 21 12 9 24 24 C 1.46900 * 110.99562 * 170.00041 * 7 6 5 25 25 C 1.34511 * 108.42031 * 359.97438 * 5 4 3 26 26 H 1.08995 * 109.47011 * 269.97747 * 1 2 3 27 27 H 1.08998 * 109.47120 * 29.98103 * 1 2 3 28 28 H 1.09001 * 109.46741 * 149.97990 * 1 2 3 29 29 H 1.08005 * 125.78952 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.47066 * 30.01681 * 6 5 4 31 31 H 1.09001 * 109.46817 * 150.02564 * 6 5 4 32 32 H 1.09002 * 109.49787 * 292.71038 * 8 7 6 33 33 H 1.09005 * 109.49426 * 52.78953 * 8 7 6 34 34 H 1.08991 * 109.47135 * 303.41678 * 11 9 8 35 35 H 1.08996 * 109.46878 * 63.42571 * 11 9 8 36 36 H 1.09004 * 109.46965 * 183.41964 * 11 9 8 37 37 H 0.96994 * 120.00602 * 185.14365 * 16 15 13 38 38 H 1.09001 * 109.47048 * 179.03116 * 23 21 12 39 39 H 1.09006 * 109.46801 * 299.02851 * 23 21 12 40 40 H 1.08998 * 109.47309 * 59.02793 * 23 21 12 41 41 H 1.08997 * 109.49792 * 307.21411 * 24 7 6 42 42 H 1.09005 * 109.49196 * 67.27019 * 24 7 6 43 43 H 1.07998 * 126.57628 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0801 0.0000 4 8 3.5848 0.6616 -0.0006 5 6 3.6157 -0.6811 -0.0015 6 6 4.8581 -1.5340 -0.0029 7 7 5.2610 -1.8098 -1.3884 8 6 4.2593 -2.6377 -2.0732 9 6 4.6233 -2.7510 -3.5574 10 1 4.5399 -1.7740 -4.0335 11 6 3.6789 -3.7397 -4.2441 12 7 6.0079 -3.2356 -3.6631 13 6 6.3188 -4.3076 -4.4564 14 1 5.5773 -5.0684 -4.6509 15 6 7.5869 -4.4165 -5.0105 16 7 8.3771 -3.3650 -5.0574 17 14 8.1717 -6.0554 -5.6898 18 1 7.8066 -6.1548 -7.1257 19 1 9.6466 -6.1528 -5.5461 20 1 7.5270 -7.1615 -4.9374 21 6 7.0498 -2.5384 -2.8939 22 1 7.9832 -3.0992 -2.9442 23 6 7.2612 -1.1362 -3.4684 24 6 6.5903 -2.4334 -1.4358 25 6 2.3496 -1.1354 -0.0010 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9815 2.1095 0.0004 30 1 5.6615 -1.0064 0.5110 31 1 4.6541 -2.4739 0.5100 32 1 4.2416 -3.6316 -1.6261 33 1 3.2767 -2.1763 -1.9739 34 1 3.7270 -4.7019 -3.7345 35 1 2.6592 -3.3569 -4.2024 36 1 3.9778 -3.8645 -5.2849 37 1 9.2328 -3.4212 -5.5106 38 1 8.0214 -0.6157 -2.8859 39 1 7.5880 -1.2139 -4.5054 40 1 6.3249 -0.5801 -3.4232 41 1 7.2983 -1.8239 -0.8743 42 1 6.5403 -3.4300 -0.9972 43 1 2.0367 -2.1690 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334384731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:35 Heat of formation + Delta-G solvation = 45.857734 kcal Electronic energy + Delta-G solvation = -22830.125354 eV Core-core repulsion = 19684.902737 eV Total energy + Delta-G solvation = -3145.222618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.44274 -38.50221 -34.99350 -33.98990 -32.50331 -31.74413 -30.13298 -28.00220 -27.33228 -26.23616 -25.56992 -23.92789 -22.11101 -21.14446 -20.60274 -19.42565 -18.52178 -16.91305 -16.40036 -15.84485 -15.28982 -14.71463 -14.46824 -14.24473 -13.86018 -13.60143 -13.37807 -13.23070 -13.05442 -12.86778 -12.51126 -12.23775 -12.12816 -11.80932 -11.52252 -11.44339 -11.02559 -10.88286 -10.80219 -10.57773 -10.49325 -10.41931 -10.00905 -9.87630 -9.45988 -9.39358 -9.19026 -8.46030 -8.26584 -7.77846 -6.54348 -5.72227 -3.12467 1.85748 2.65591 3.16243 3.39151 3.46850 3.48200 4.45915 4.53743 4.78669 4.94150 5.06625 5.35472 5.37539 5.39121 5.44776 5.53644 5.61291 5.77625 5.84118 5.84714 5.95463 6.10654 6.14872 6.18876 6.24540 6.29982 6.35162 6.38907 6.47131 6.64836 6.67687 6.89519 7.01187 7.08293 7.15429 7.29016 7.31060 7.53811 7.58241 7.78450 7.88642 8.01485 8.52411 9.29472 9.91690 10.50837 11.36306 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.004635 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.895139 B = 6040.013495 C = 6493.615428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.183 4.183 3 C -0.051 4.051 4 O -0.167 6.167 5 C 0.019 3.981 6 C 0.126 3.874 7 N -0.525 5.525 8 C 0.045 3.955 9 C 0.173 3.827 10 H 0.032 0.968 11 C -0.137 4.137 12 N -0.585 5.585 13 C -0.249 4.249 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.200 3.800 22 H 0.095 0.905 23 C -0.136 4.136 24 C 0.042 3.958 25 C -0.211 4.211 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.197 0.803 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.252 0.748 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 5.713 10.606 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.185 4.185 3 C -0.119 4.119 4 O -0.062 6.062 5 C -0.032 4.032 6 C -0.002 4.002 7 N -0.250 5.250 8 C -0.084 4.084 9 C 0.066 3.934 10 H 0.050 0.950 11 C -0.196 4.196 12 N -0.308 5.308 13 C -0.378 4.378 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.728 3.272 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.093 3.907 22 H 0.113 0.887 23 C -0.195 4.195 24 C -0.087 4.087 25 C -0.231 4.231 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.214 0.786 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.527 6.301 10.333 16.040 hybrid contribution 0.095 -1.558 0.011 1.560 sum -10.432 4.743 10.345 15.438 Atomic orbital electron populations 1.20128 0.89582 1.02422 1.01650 1.20417 0.96984 0.92853 1.08230 1.23729 0.80484 0.99449 1.08231 1.84035 1.29009 1.22331 1.70869 1.22353 0.96690 0.80602 1.03546 1.20522 0.91926 0.95297 0.92411 1.61916 1.03434 1.48032 1.11606 1.22773 0.94393 0.93960 0.97295 1.20436 0.86589 0.95556 0.90843 0.95033 1.21804 0.96787 0.99115 1.01846 1.44283 1.01041 1.34392 1.51065 1.19165 0.97066 0.97756 1.23856 0.91352 1.25031 0.98624 0.96810 0.99006 1.69935 1.11848 1.27124 1.45634 0.86358 0.77845 0.84175 0.78796 1.21589 1.21697 1.20708 1.20375 0.92775 0.93069 0.84471 0.88736 1.21975 0.98135 0.96906 1.02481 1.22919 0.88358 0.95575 1.01830 1.21420 0.91846 0.99603 1.10254 0.91836 0.91898 0.91643 0.78645 0.89537 0.92302 0.95450 0.91629 0.93135 0.94316 0.91631 0.93722 0.96117 0.90746 0.94838 0.91970 0.95578 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.40 36.01 0.37 -0.37 16 2 C -0.18 -2.29 6.16 -104.74 -0.65 -2.93 16 3 C -0.05 -0.63 12.01 29.41 0.35 -0.28 16 4 O -0.17 -2.55 10.65 5.69 0.06 -2.49 16 5 C 0.02 0.29 6.23 -35.62 -0.22 0.07 16 6 C 0.13 1.90 5.50 -4.97 -0.03 1.87 16 7 N -0.53 -9.57 4.12 -235.76 -0.97 -10.55 16 8 C 0.05 0.84 4.72 -3.70 -0.02 0.82 16 9 C 0.17 3.69 3.25 -67.49 -0.22 3.47 16 10 H 0.03 0.74 7.61 -51.92 -0.40 0.35 16 11 C -0.14 -2.64 7.95 37.16 0.30 -2.34 16 12 N -0.58 -14.32 2.73 -157.00 -0.43 -14.75 16 13 C -0.25 -6.60 8.65 -15.06 -0.13 -6.73 16 14 H 0.07 1.78 6.23 -52.48 -0.33 1.46 16 15 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 16 N -0.90 -25.22 9.77 55.49 0.54 -24.67 16 17 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.20 4.68 2.34 -67.49 -0.16 4.52 16 22 H 0.09 2.49 6.21 -51.93 -0.32 2.17 16 23 C -0.14 -3.15 8.97 37.16 0.33 -2.82 16 24 C 0.04 0.81 5.01 -3.70 -0.02 0.80 16 25 C -0.21 -2.93 9.18 -39.70 -0.36 -3.29 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16 31 H 0.06 0.82 8.12 -51.93 -0.42 0.39 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.14 5.91 -51.93 -0.31 0.84 16 34 H 0.05 0.96 7.72 -51.93 -0.40 0.56 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.35 7.38 -51.93 -0.38 0.97 16 37 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.95 6.81 -51.93 -0.35 1.59 16 40 H 0.03 0.77 7.06 -51.93 -0.37 0.40 16 41 H 0.06 1.10 7.99 -51.93 -0.41 0.69 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -29.08 333.95 -8.37 -37.46 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.05 Total: 0.78 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.53 Total: -7.21 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.86 Total: -49.97 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: 0.06 Total: -2.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.08 -8.37 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334384731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.315 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds