Wall clock time and date at job start Mon Mar 30 2020 23:57:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.34507 * 126.57923 * 2 1
4 4 O 1.34304 * 108.42354 * 180.02562 * 3 2 1
5 5 C 1.34311 * 109.47276 * 0.02562 * 4 3 2
6 6 C 1.50703 * 125.78673 * 179.97438 * 5 4 3
7 7 N 1.46905 * 109.46572 * 270.02007 * 6 5 4
8 8 C 1.46897 * 111.00052 * 294.30053 * 7 6 5
9 9 C 1.53234 * 109.34173 * 172.74947 * 8 7 6
10 10 H 1.09008 * 109.79042 * 294.03088 * 9 8 7
11 11 C 1.53002 * 109.63037 * 173.54104 * 9 8 7
12 12 N 1.47080 * 108.52045 * 53.83110 * 9 8 7
13 13 C 1.36937 * 120.88466 * 128.79804 * 12 9 8
14 14 H 1.08003 * 119.99425 * 332.27206 * 13 12 9
15 15 C 1.38810 * 120.00326 * 152.27536 * 13 12 9
16 16 N 1.31614 * 120.00240 * 343.35007 * 15 13 12
17 17 Si 1.86801 * 119.99914 * 163.35633 * 15 13 12
18 18 H 1.48496 * 109.47221 * 89.99607 * 17 15 13
19 19 H 1.48500 * 109.47003 * 209.99731 * 17 15 13
20 20 H 1.48498 * 109.47060 * 329.99620 * 17 15 13
21 21 C 1.47082 * 118.23671 * 308.81641 * 12 9 8
22 22 H 1.09002 * 109.79191 * 170.99005 * 21 12 9
23 23 C 1.52999 * 109.62936 * 291.47515 * 21 12 9
24 24 C 1.46900 * 110.99562 * 170.00041 * 7 6 5
25 25 C 1.34511 * 108.42031 * 359.97438 * 5 4 3
26 26 H 1.08995 * 109.47011 * 269.97747 * 1 2 3
27 27 H 1.08998 * 109.47120 * 29.98103 * 1 2 3
28 28 H 1.09001 * 109.46741 * 149.97990 * 1 2 3
29 29 H 1.08005 * 125.78952 * 0.02562 * 3 2 1
30 30 H 1.08994 * 109.47066 * 30.01681 * 6 5 4
31 31 H 1.09001 * 109.46817 * 150.02564 * 6 5 4
32 32 H 1.09002 * 109.49787 * 292.71038 * 8 7 6
33 33 H 1.09005 * 109.49426 * 52.78953 * 8 7 6
34 34 H 1.08991 * 109.47135 * 303.41678 * 11 9 8
35 35 H 1.08996 * 109.46878 * 63.42571 * 11 9 8
36 36 H 1.09004 * 109.46965 * 183.41964 * 11 9 8
37 37 H 0.96994 * 120.00602 * 185.14365 * 16 15 13
38 38 H 1.09001 * 109.47048 * 179.03116 * 23 21 12
39 39 H 1.09006 * 109.46801 * 299.02851 * 23 21 12
40 40 H 1.08998 * 109.47309 * 59.02793 * 23 21 12
41 41 H 1.08997 * 109.49792 * 307.21411 * 24 7 6
42 42 H 1.09005 * 109.49196 * 67.27019 * 24 7 6
43 43 H 1.07998 * 126.57628 * 180.02562 * 25 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3086 1.0801 0.0000
4 8 3.5848 0.6616 -0.0006
5 6 3.6157 -0.6811 -0.0015
6 6 4.8581 -1.5340 -0.0029
7 7 5.2610 -1.8098 -1.3884
8 6 4.2593 -2.6377 -2.0732
9 6 4.6233 -2.7510 -3.5574
10 1 4.5399 -1.7740 -4.0335
11 6 3.6789 -3.7397 -4.2441
12 7 6.0079 -3.2356 -3.6631
13 6 6.3188 -4.3076 -4.4564
14 1 5.5773 -5.0684 -4.6509
15 6 7.5869 -4.4165 -5.0105
16 7 8.3771 -3.3650 -5.0574
17 14 8.1717 -6.0554 -5.6898
18 1 7.8066 -6.1548 -7.1257
19 1 9.6466 -6.1528 -5.5461
20 1 7.5270 -7.1615 -4.9374
21 6 7.0498 -2.5384 -2.8939
22 1 7.9832 -3.0992 -2.9442
23 6 7.2612 -1.1362 -3.4684
24 6 6.5903 -2.4334 -1.4358
25 6 2.3496 -1.1354 -0.0010
26 1 -0.3633 -0.0004 1.0276
27 1 -0.3633 0.8901 -0.5135
28 1 -0.3633 -0.8898 -0.5142
29 1 1.9815 2.1095 0.0004
30 1 5.6615 -1.0064 0.5110
31 1 4.6541 -2.4739 0.5100
32 1 4.2416 -3.6316 -1.6261
33 1 3.2767 -2.1763 -1.9739
34 1 3.7270 -4.7019 -3.7345
35 1 2.6592 -3.3569 -4.2024
36 1 3.9778 -3.8645 -5.2849
37 1 9.2328 -3.4212 -5.5106
38 1 8.0214 -0.6157 -2.8859
39 1 7.5880 -1.2139 -4.5054
40 1 6.3249 -0.5801 -3.4232
41 1 7.2983 -1.8239 -0.8743
42 1 6.5403 -3.4300 -0.9972
43 1 2.0367 -2.1690 -0.0011
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001334384731.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 23:57:34
Heat of formation + Delta-G solvation = 29.297184 kcal
Electronic energy + Delta-G solvation = -22830.843474 eV
Core-core repulsion = 19684.902737 eV
Total energy + Delta-G solvation = -3145.940737 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 278.174 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-43.45833 -40.11423 -36.61269 -34.92682 -34.24724 -33.47360 -31.48679 -29.69370
-28.43667 -27.66857 -26.94974 -25.78118 -23.65425 -22.45204 -22.03882 -20.45227
-20.32443 -18.08498 -17.91245 -17.24107 -16.94415 -16.13360 -16.05019 -15.68648
-15.59576 -15.03439 -14.74748 -14.62439 -14.08407 -13.88413 -13.77005 -13.55776
-13.34741 -13.34587 -13.11615 -12.86124 -12.73853 -12.64147 -12.33905 -12.22084
-12.20289 -12.09716 -11.89271 -11.64692 -11.23749 -11.01758 -10.48392 -10.38826
-9.37771 -9.14999 -8.48957 -7.76835 -5.18487 0.83028 1.48136 1.50750
1.58485 1.67760 2.18624 2.55544 3.09613 3.37598 3.62165 3.77941
4.06314 4.14094 4.21994 4.29800 4.31148 4.44326 4.59052 4.60536
4.61470 4.63765 4.77290 4.83435 4.86272 4.88159 4.91595 4.98103
5.08961 5.11278 5.21110 5.24471 5.32195 5.35214 5.41723 5.53200
5.72284 5.73942 5.77787 5.99696 6.18007 6.21367 6.33536 6.51566
7.26975 7.96753 8.51492 9.29868
Molecular weight = 278.17amu
Principal moments of inertia in cm(-1)
A = 0.030631 B = 0.004635 C = 0.004311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 913.895139 B = 6040.013495 C = 6493.615428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.195 4.195
3 C -0.052 4.052
4 O -0.188 6.188
5 C -0.007 4.007
6 C 0.131 3.869
7 N -0.536 5.536
8 C 0.060 3.940
9 C 0.166 3.834
10 H 0.009 0.991
11 C -0.128 4.128
12 N -0.599 5.599
13 C -0.253 4.253
14 H 0.071 0.929
15 C -0.046 4.046
16 N -0.925 5.925
17 Si 0.958 3.042
18 H -0.289 1.289
19 H -0.296 1.296
20 H -0.274 1.274
21 C 0.196 3.804
22 H 0.061 0.939
23 C -0.118 4.118
24 C 0.055 3.945
25 C -0.212 4.212
26 H 0.076 0.924
27 H 0.077 0.923
28 H 0.066 0.934
29 H 0.230 0.770
30 H 0.096 0.904
31 H 0.074 0.926
32 H 0.027 0.973
33 H 0.081 0.919
34 H 0.050 0.950
35 H 0.070 0.930
36 H 0.044 0.956
37 H 0.246 0.754
38 H 0.036 0.964
39 H 0.038 0.962
40 H 0.030 0.970
41 H 0.081 0.919
42 H 0.023 0.977
43 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.971 5.891 12.015 18.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.196 4.196
3 C -0.120 4.120
4 O -0.085 6.085
5 C -0.058 4.058
6 C 0.003 3.997
7 N -0.261 5.261
8 C -0.069 4.069
9 C 0.059 3.941
10 H 0.027 0.973
11 C -0.186 4.186
12 N -0.322 5.322
13 C -0.383 4.383
14 H 0.088 0.912
15 C -0.242 4.242
16 N -0.572 5.572
17 Si 0.787 3.213
18 H -0.217 1.217
19 H -0.223 1.223
20 H -0.200 1.200
21 C 0.090 3.910
22 H 0.079 0.921
23 C -0.177 4.177
24 C -0.074 4.074
25 C -0.232 4.232
26 H 0.094 0.906
27 H 0.096 0.904
28 H 0.085 0.915
29 H 0.246 0.754
30 H 0.114 0.886
31 H 0.091 0.909
32 H 0.045 0.955
33 H 0.099 0.901
34 H 0.069 0.931
35 H 0.089 0.911
36 H 0.063 0.937
37 H 0.055 0.945
38 H 0.055 0.945
39 H 0.057 0.943
40 H 0.049 0.951
41 H 0.099 0.901
42 H 0.042 0.958
43 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -12.502 6.477 11.760 18.345
hybrid contribution 0.610 -1.525 -0.412 1.694
sum -11.892 4.951 11.348 17.167
Atomic orbital electron populations
1.20198 0.87385 1.03254 1.02741 1.20832 0.98601 0.92304 1.07911
1.24494 0.79500 1.01119 1.06838 1.84014 1.30585 1.22482 1.71384
1.22339 0.96933 0.80824 1.05686 1.20508 0.92638 0.96191 0.90313
1.61819 1.02673 1.47547 1.14088 1.22532 0.95088 0.94210 0.95048
1.20604 0.85548 0.94828 0.93080 0.97334 1.21703 0.97991 0.98748
1.00171 1.44515 1.02482 1.34235 1.51014 1.19446 0.97090 0.98403
1.23399 0.91170 1.25677 0.99003 0.99405 1.00098 1.70108 1.11779
1.28614 1.46664 0.85417 0.76797 0.81072 0.78000 1.21655 1.22308
1.19951 1.20285 0.91613 0.92161 0.86984 0.92114 1.21755 0.98171
0.97272 1.00522 1.22618 0.89737 0.96118 0.98888 1.21679 0.91827
1.00516 1.09211 0.90560 0.90398 0.91527 0.75353 0.88592 0.90851
0.95517 0.90103 0.93069 0.91087 0.93672 0.94470 0.94538 0.94271
0.95083 0.90067 0.95836 0.83151
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.21 10.40 71.24 0.74 -0.47 16
2 C -0.20 -4.33 6.16 -19.94 -0.12 -4.45 16
3 C -0.05 -1.16 12.01 66.97 0.80 -0.36 16
4 O -0.19 -5.40 10.65 -2.57 -0.03 -5.43 16
5 C -0.01 -0.21 6.23 24.83 0.15 -0.05 16
6 C 0.13 3.67 5.50 85.56 0.47 4.14 16
7 N -0.54 -18.79 4.12 -899.82 -3.71 -22.50 16
8 C 0.06 2.15 4.72 86.38 0.41 2.56 16
9 C 0.17 7.02 3.25 44.96 0.15 7.17 16
10 H 0.01 0.42 7.61 -2.38 -0.02 0.40 16
11 C -0.13 -4.79 7.95 71.98 0.57 -4.22 16
12 N -0.60 -29.63 2.73 -650.64 -1.77 -31.41 16
13 C -0.25 -13.59 8.65 84.03 0.73 -12.86 16
14 H 0.07 3.67 6.23 -2.91 -0.02 3.65 16
15 C -0.05 -2.55 4.94 84.86 0.42 -2.13 16
16 N -0.93 -53.40 9.77 21.65 0.21 -53.19 16
17 Si 0.96 44.77 29.59 68.60 2.03 46.80 16
18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16
19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
21 C 0.20 9.31 2.34 44.96 0.11 9.42 16
22 H 0.06 3.30 6.21 -2.39 -0.01 3.28 16
23 C -0.12 -5.57 8.97 71.98 0.65 -4.93 16
24 C 0.06 2.10 5.01 86.38 0.43 2.54 16
25 C -0.21 -5.38 9.18 22.19 0.20 -5.18 16
26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.23 3.13 8.06 -2.91 -0.02 3.10 16
30 H 0.10 2.49 7.97 -2.39 -0.02 2.47 16
31 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16
32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
33 H 0.08 2.64 5.91 -2.38 -0.01 2.62 16
34 H 0.05 1.88 7.72 -2.39 -0.02 1.87 16
35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16
36 H 0.04 1.84 7.38 -2.39 -0.02 1.83 16
37 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16
38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
39 H 0.04 2.10 6.81 -2.38 -0.02 2.08 16
40 H 0.03 1.43 7.06 -2.39 -0.02 1.41 16
41 H 0.08 2.77 7.99 -2.39 -0.02 2.75 16
42 H 0.02 0.90 8.14 -2.38 -0.02 0.89 16
43 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16
Total: -1.00 -63.40 333.95 3.41 -59.98
By element:
Atomic # 1 Polarization: 13.60 SS G_CDS: 0.97 Total: 14.57 kcal
Atomic # 6 Polarization: -14.54 SS G_CDS: 5.71 Total: -8.83 kcal
Atomic # 7 Polarization: -101.83 SS G_CDS: -5.27 Total: -107.10 kcal
Atomic # 8 Polarization: -5.40 SS G_CDS: -0.03 Total: -5.43 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal
Total: -63.40 3.41 -59.98 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001334384731.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.281 kcal
(2) G-P(sol) polarization free energy of solvation -63.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds