Wall clock time and date at job start Mon Mar 30 2020 23:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34507 * 126.57923 * 2 1 4 4 O 1.34304 * 108.42354 * 180.02562 * 3 2 1 5 5 C 1.34311 * 109.47276 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78673 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46572 * 270.02007 * 6 5 4 8 8 C 1.46897 * 111.00052 * 294.30053 * 7 6 5 9 9 C 1.53234 * 109.34173 * 172.74947 * 8 7 6 10 10 H 1.09008 * 109.79042 * 294.03088 * 9 8 7 11 11 C 1.53002 * 109.63037 * 173.54104 * 9 8 7 12 12 N 1.47080 * 108.52045 * 53.83110 * 9 8 7 13 13 C 1.36937 * 120.88466 * 128.79804 * 12 9 8 14 14 H 1.08003 * 119.99425 * 332.27206 * 13 12 9 15 15 C 1.38810 * 120.00326 * 152.27536 * 13 12 9 16 16 N 1.31614 * 120.00240 * 343.35007 * 15 13 12 17 17 Si 1.86801 * 119.99914 * 163.35633 * 15 13 12 18 18 H 1.48496 * 109.47221 * 89.99607 * 17 15 13 19 19 H 1.48500 * 109.47003 * 209.99731 * 17 15 13 20 20 H 1.48498 * 109.47060 * 329.99620 * 17 15 13 21 21 C 1.47082 * 118.23671 * 308.81641 * 12 9 8 22 22 H 1.09002 * 109.79191 * 170.99005 * 21 12 9 23 23 C 1.52999 * 109.62936 * 291.47515 * 21 12 9 24 24 C 1.46900 * 110.99562 * 170.00041 * 7 6 5 25 25 C 1.34511 * 108.42031 * 359.97438 * 5 4 3 26 26 H 1.08995 * 109.47011 * 269.97747 * 1 2 3 27 27 H 1.08998 * 109.47120 * 29.98103 * 1 2 3 28 28 H 1.09001 * 109.46741 * 149.97990 * 1 2 3 29 29 H 1.08005 * 125.78952 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.47066 * 30.01681 * 6 5 4 31 31 H 1.09001 * 109.46817 * 150.02564 * 6 5 4 32 32 H 1.09002 * 109.49787 * 292.71038 * 8 7 6 33 33 H 1.09005 * 109.49426 * 52.78953 * 8 7 6 34 34 H 1.08991 * 109.47135 * 303.41678 * 11 9 8 35 35 H 1.08996 * 109.46878 * 63.42571 * 11 9 8 36 36 H 1.09004 * 109.46965 * 183.41964 * 11 9 8 37 37 H 0.96994 * 120.00602 * 185.14365 * 16 15 13 38 38 H 1.09001 * 109.47048 * 179.03116 * 23 21 12 39 39 H 1.09006 * 109.46801 * 299.02851 * 23 21 12 40 40 H 1.08998 * 109.47309 * 59.02793 * 23 21 12 41 41 H 1.08997 * 109.49792 * 307.21411 * 24 7 6 42 42 H 1.09005 * 109.49196 * 67.27019 * 24 7 6 43 43 H 1.07998 * 126.57628 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0801 0.0000 4 8 3.5848 0.6616 -0.0006 5 6 3.6157 -0.6811 -0.0015 6 6 4.8581 -1.5340 -0.0029 7 7 5.2610 -1.8098 -1.3884 8 6 4.2593 -2.6377 -2.0732 9 6 4.6233 -2.7510 -3.5574 10 1 4.5399 -1.7740 -4.0335 11 6 3.6789 -3.7397 -4.2441 12 7 6.0079 -3.2356 -3.6631 13 6 6.3188 -4.3076 -4.4564 14 1 5.5773 -5.0684 -4.6509 15 6 7.5869 -4.4165 -5.0105 16 7 8.3771 -3.3650 -5.0574 17 14 8.1717 -6.0554 -5.6898 18 1 7.8066 -6.1548 -7.1257 19 1 9.6466 -6.1528 -5.5461 20 1 7.5270 -7.1615 -4.9374 21 6 7.0498 -2.5384 -2.8939 22 1 7.9832 -3.0992 -2.9442 23 6 7.2612 -1.1362 -3.4684 24 6 6.5903 -2.4334 -1.4358 25 6 2.3496 -1.1354 -0.0010 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9815 2.1095 0.0004 30 1 5.6615 -1.0064 0.5110 31 1 4.6541 -2.4739 0.5100 32 1 4.2416 -3.6316 -1.6261 33 1 3.2767 -2.1763 -1.9739 34 1 3.7270 -4.7019 -3.7345 35 1 2.6592 -3.3569 -4.2024 36 1 3.9778 -3.8645 -5.2849 37 1 9.2328 -3.4212 -5.5106 38 1 8.0214 -0.6157 -2.8859 39 1 7.5880 -1.2139 -4.5054 40 1 6.3249 -0.5801 -3.4232 41 1 7.2983 -1.8239 -0.8743 42 1 6.5403 -3.4300 -0.9972 43 1 2.0367 -2.1690 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334384731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:34 Heat of formation + Delta-G solvation = 29.297184 kcal Electronic energy + Delta-G solvation = -22830.843474 eV Core-core repulsion = 19684.902737 eV Total energy + Delta-G solvation = -3145.940737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45833 -40.11423 -36.61269 -34.92682 -34.24724 -33.47360 -31.48679 -29.69370 -28.43667 -27.66857 -26.94974 -25.78118 -23.65425 -22.45204 -22.03882 -20.45227 -20.32443 -18.08498 -17.91245 -17.24107 -16.94415 -16.13360 -16.05019 -15.68648 -15.59576 -15.03439 -14.74748 -14.62439 -14.08407 -13.88413 -13.77005 -13.55776 -13.34741 -13.34587 -13.11615 -12.86124 -12.73853 -12.64147 -12.33905 -12.22084 -12.20289 -12.09716 -11.89271 -11.64692 -11.23749 -11.01758 -10.48392 -10.38826 -9.37771 -9.14999 -8.48957 -7.76835 -5.18487 0.83028 1.48136 1.50750 1.58485 1.67760 2.18624 2.55544 3.09613 3.37598 3.62165 3.77941 4.06314 4.14094 4.21994 4.29800 4.31148 4.44326 4.59052 4.60536 4.61470 4.63765 4.77290 4.83435 4.86272 4.88159 4.91595 4.98103 5.08961 5.11278 5.21110 5.24471 5.32195 5.35214 5.41723 5.53200 5.72284 5.73942 5.77787 5.99696 6.18007 6.21367 6.33536 6.51566 7.26975 7.96753 8.51492 9.29868 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.004635 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.895139 B = 6040.013495 C = 6493.615428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.195 4.195 3 C -0.052 4.052 4 O -0.188 6.188 5 C -0.007 4.007 6 C 0.131 3.869 7 N -0.536 5.536 8 C 0.060 3.940 9 C 0.166 3.834 10 H 0.009 0.991 11 C -0.128 4.128 12 N -0.599 5.599 13 C -0.253 4.253 14 H 0.071 0.929 15 C -0.046 4.046 16 N -0.925 5.925 17 Si 0.958 3.042 18 H -0.289 1.289 19 H -0.296 1.296 20 H -0.274 1.274 21 C 0.196 3.804 22 H 0.061 0.939 23 C -0.118 4.118 24 C 0.055 3.945 25 C -0.212 4.212 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.230 0.770 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.246 0.754 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.030 0.970 41 H 0.081 0.919 42 H 0.023 0.977 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 5.891 12.015 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.196 4.196 3 C -0.120 4.120 4 O -0.085 6.085 5 C -0.058 4.058 6 C 0.003 3.997 7 N -0.261 5.261 8 C -0.069 4.069 9 C 0.059 3.941 10 H 0.027 0.973 11 C -0.186 4.186 12 N -0.322 5.322 13 C -0.383 4.383 14 H 0.088 0.912 15 C -0.242 4.242 16 N -0.572 5.572 17 Si 0.787 3.213 18 H -0.217 1.217 19 H -0.223 1.223 20 H -0.200 1.200 21 C 0.090 3.910 22 H 0.079 0.921 23 C -0.177 4.177 24 C -0.074 4.074 25 C -0.232 4.232 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.246 0.754 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.099 0.901 42 H 0.042 0.958 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.502 6.477 11.760 18.345 hybrid contribution 0.610 -1.525 -0.412 1.694 sum -11.892 4.951 11.348 17.167 Atomic orbital electron populations 1.20198 0.87385 1.03254 1.02741 1.20832 0.98601 0.92304 1.07911 1.24494 0.79500 1.01119 1.06838 1.84014 1.30585 1.22482 1.71384 1.22339 0.96933 0.80824 1.05686 1.20508 0.92638 0.96191 0.90313 1.61819 1.02673 1.47547 1.14088 1.22532 0.95088 0.94210 0.95048 1.20604 0.85548 0.94828 0.93080 0.97334 1.21703 0.97991 0.98748 1.00171 1.44515 1.02482 1.34235 1.51014 1.19446 0.97090 0.98403 1.23399 0.91170 1.25677 0.99003 0.99405 1.00098 1.70108 1.11779 1.28614 1.46664 0.85417 0.76797 0.81072 0.78000 1.21655 1.22308 1.19951 1.20285 0.91613 0.92161 0.86984 0.92114 1.21755 0.98171 0.97272 1.00522 1.22618 0.89737 0.96118 0.98888 1.21679 0.91827 1.00516 1.09211 0.90560 0.90398 0.91527 0.75353 0.88592 0.90851 0.95517 0.90103 0.93069 0.91087 0.93672 0.94470 0.94538 0.94271 0.95083 0.90067 0.95836 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.40 71.24 0.74 -0.47 16 2 C -0.20 -4.33 6.16 -19.94 -0.12 -4.45 16 3 C -0.05 -1.16 12.01 66.97 0.80 -0.36 16 4 O -0.19 -5.40 10.65 -2.57 -0.03 -5.43 16 5 C -0.01 -0.21 6.23 24.83 0.15 -0.05 16 6 C 0.13 3.67 5.50 85.56 0.47 4.14 16 7 N -0.54 -18.79 4.12 -899.82 -3.71 -22.50 16 8 C 0.06 2.15 4.72 86.38 0.41 2.56 16 9 C 0.17 7.02 3.25 44.96 0.15 7.17 16 10 H 0.01 0.42 7.61 -2.38 -0.02 0.40 16 11 C -0.13 -4.79 7.95 71.98 0.57 -4.22 16 12 N -0.60 -29.63 2.73 -650.64 -1.77 -31.41 16 13 C -0.25 -13.59 8.65 84.03 0.73 -12.86 16 14 H 0.07 3.67 6.23 -2.91 -0.02 3.65 16 15 C -0.05 -2.55 4.94 84.86 0.42 -2.13 16 16 N -0.93 -53.40 9.77 21.65 0.21 -53.19 16 17 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.20 9.31 2.34 44.96 0.11 9.42 16 22 H 0.06 3.30 6.21 -2.39 -0.01 3.28 16 23 C -0.12 -5.57 8.97 71.98 0.65 -4.93 16 24 C 0.06 2.10 5.01 86.38 0.43 2.54 16 25 C -0.21 -5.38 9.18 22.19 0.20 -5.18 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.23 3.13 8.06 -2.91 -0.02 3.10 16 30 H 0.10 2.49 7.97 -2.39 -0.02 2.47 16 31 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 2.64 5.91 -2.38 -0.01 2.62 16 34 H 0.05 1.88 7.72 -2.39 -0.02 1.87 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.84 7.38 -2.39 -0.02 1.83 16 37 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 2.10 6.81 -2.38 -0.02 2.08 16 40 H 0.03 1.43 7.06 -2.39 -0.02 1.41 16 41 H 0.08 2.77 7.99 -2.39 -0.02 2.75 16 42 H 0.02 0.90 8.14 -2.38 -0.02 0.89 16 43 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -63.40 333.95 3.41 -59.98 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.97 Total: 14.57 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.71 Total: -8.83 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -5.27 Total: -107.10 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.03 Total: -5.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.40 3.41 -59.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334384731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.281 kcal (2) G-P(sol) polarization free energy of solvation -63.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds