Wall clock time and date at job start Tue Mar 31 2020 00:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46936 * 2 1 4 4 O 1.34042 * 126.77640 * 269.99289 * 3 2 1 5 5 N 1.20923 * 111.57059 * 180.02562 * 4 3 2 6 6 C 1.30171 * 111.60048 * 359.74287 * 5 4 3 7 7 C 1.50704 * 126.80087 * 180.24977 * 6 5 4 8 8 C 1.35449 * 126.77996 * 90.00437 * 3 2 1 9 9 C 1.50701 * 128.00589 * 359.95204 * 8 3 2 10 10 N 1.46906 * 109.46965 * 90.00688 * 9 8 3 11 11 C 1.46853 * 110.99832 * 294.21171 * 10 9 8 12 12 C 1.53033 * 109.52262 * 174.16246 * 11 10 9 13 13 C 1.53112 * 109.27992 * 59.17361 * 12 11 10 14 14 C 1.50701 * 109.57672 * 182.40672 * 13 12 11 15 15 H 1.08003 * 119.99742 * 119.71365 * 14 13 12 16 16 C 1.37876 * 120.00476 * 299.72309 * 14 13 12 17 17 N 1.31520 * 119.99516 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00480 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46944 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47371 * 119.99376 * 18 16 14 21 21 H 1.48503 * 109.47120 * 239.99755 * 18 16 14 22 22 C 1.53120 * 109.16707 * 302.34582 * 13 12 11 23 23 C 1.46844 * 110.99887 * 170.00048 * 10 9 8 24 24 H 1.09003 * 109.47372 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.46828 * 60.00351 * 1 2 3 26 26 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46934 * 239.99804 * 2 1 3 28 28 H 1.09004 * 109.46828 * 119.99649 * 2 1 3 29 29 H 1.08990 * 109.47521 * 270.17131 * 7 6 5 30 30 H 1.09006 * 109.46947 * 30.17722 * 7 6 5 31 31 H 1.09006 * 109.46920 * 150.16841 * 7 6 5 32 32 H 1.08993 * 109.47133 * 330.00726 * 9 8 3 33 33 H 1.08996 * 109.47320 * 210.00466 * 9 8 3 34 34 H 1.09001 * 109.46125 * 294.17808 * 11 10 9 35 35 H 1.09003 * 109.46462 * 54.14202 * 11 10 9 36 36 H 1.09007 * 109.50330 * 299.23709 * 12 11 10 37 37 H 1.09002 * 109.50417 * 179.12117 * 12 11 10 38 38 H 1.09005 * 109.52421 * 62.25399 * 13 12 11 39 39 H 0.97002 * 119.99540 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.49890 * 297.71825 * 22 13 12 41 41 H 1.08989 * 109.54077 * 177.61187 * 22 13 12 42 42 H 1.09000 * 109.46299 * 305.85220 * 23 10 9 43 43 H 1.08998 * 109.46010 * 65.83553 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2999 2.1773 -1.0736 5 7 2.6893 3.2774 -0.7565 6 6 2.7327 3.4158 0.5371 7 6 3.1598 4.6434 1.2998 8 6 2.3027 2.1854 1.0849 9 6 2.1700 1.8128 2.5391 10 7 3.4325 1.2294 3.0122 11 6 3.7054 -0.0485 2.3421 12 6 5.0915 -0.5536 2.7491 13 6 5.1381 -0.7327 4.2690 14 6 6.5183 -1.1735 4.6834 15 1 7.0994 -0.5641 5.3597 16 6 7.0393 -2.3546 4.1991 17 7 6.3315 -3.0968 3.3759 18 14 8.7504 -2.9006 4.7123 19 1 9.3337 -1.8963 5.6377 20 1 8.6658 -4.2154 5.3974 21 1 9.6122 -3.0239 3.5092 22 6 4.8030 0.6008 4.9428 23 6 3.4252 1.0725 4.4722 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 4.2331 4.6011 1.4849 30 1 2.9266 5.5336 0.7156 31 1 2.6284 4.6835 2.2508 32 1 1.3672 1.0850 2.6559 33 1 1.9403 2.7040 3.1230 34 1 2.9520 -0.7800 2.6343 35 1 3.6734 0.0937 1.2618 36 1 5.8468 0.1710 2.4448 37 1 5.2874 -1.5098 2.2638 38 1 4.4097 -1.4859 4.5696 39 1 6.6979 -3.9280 3.0354 40 1 5.5537 1.3436 4.6729 41 1 4.7928 0.4701 6.0248 42 1 3.1897 2.0288 4.9391 43 1 2.6733 0.3356 4.7544 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351273218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:27 Heat of formation + Delta-G solvation = 42.742362 kcal Electronic energy + Delta-G solvation = -22640.119462 eV Core-core repulsion = 19494.761751 eV Total energy + Delta-G solvation = -3145.357710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.76358 -38.46446 -35.49083 -34.52173 -33.53949 -31.47341 -29.99093 -29.84050 -28.57873 -27.02986 -24.76627 -23.82436 -22.23874 -21.87857 -20.75574 -19.75280 -18.62528 -17.50692 -16.80752 -16.36811 -15.22917 -14.94318 -14.75067 -14.43685 -14.19972 -13.71641 -13.31411 -13.16419 -12.93616 -12.89594 -12.67696 -12.51237 -12.35340 -12.12775 -11.84129 -11.54937 -11.36676 -11.23179 -10.97818 -10.88132 -10.60396 -10.43931 -10.22579 -9.99597 -9.70112 -9.44015 -9.10276 -8.93484 -8.70343 -8.29839 -7.78785 -5.97784 -4.02616 1.59018 2.34669 3.21469 3.30338 3.38642 3.42620 4.29753 4.45090 4.52707 4.53273 4.84587 4.96328 5.09028 5.16393 5.30998 5.33194 5.52322 5.55855 5.62477 5.65140 5.73147 5.74947 5.84873 5.86315 5.88239 5.96546 6.07029 6.09658 6.15986 6.28400 6.28932 6.58899 6.60945 6.83232 7.06092 7.13954 7.41636 7.58782 7.64795 7.81908 8.04067 8.14730 8.43120 8.48212 9.01164 9.61919 11.08562 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.004643 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.304029 B = 6029.495690 C = 6381.332610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.024 4.024 4 O 0.092 5.908 5 N -0.376 5.376 6 C 0.035 3.965 7 C -0.071 4.071 8 C -0.179 4.179 9 C 0.130 3.870 10 N -0.530 5.530 11 C 0.053 3.947 12 C -0.103 4.103 13 C 0.048 3.952 14 C -0.509 4.509 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.106 4.106 23 C 0.061 3.939 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.983 8.738 -4.395 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 C -0.088 4.088 4 O 0.029 5.971 5 N -0.083 5.083 6 C -0.124 4.124 7 C -0.128 4.128 8 C -0.183 4.183 9 C 0.002 3.998 10 N -0.255 5.255 11 C -0.074 4.074 12 C -0.142 4.142 13 C 0.029 3.971 14 C -0.547 4.547 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.066 4.066 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.301 9.695 -5.633 15.920 hybrid contribution 0.263 -1.234 1.077 1.659 sum -11.038 8.461 -4.556 14.635 Atomic orbital electron populations 1.21758 0.93691 1.02603 1.02398 1.20356 0.96485 0.86871 1.05506 1.24242 1.02177 0.96495 0.85935 1.84759 1.61726 1.17718 1.32919 1.73797 1.18327 0.99885 1.16245 1.23364 1.01229 0.97953 0.89879 1.20109 1.02551 0.91614 0.98533 1.20816 1.06981 0.93509 0.97043 1.20245 0.91870 0.99250 0.88468 1.61985 1.30404 1.27231 1.05890 1.22447 0.99920 0.87662 0.97325 1.21656 0.91489 1.01031 0.99984 1.18686 0.96419 0.90618 0.91353 1.21246 1.00767 1.05434 1.27276 0.92722 1.24962 0.97383 0.96559 0.95103 1.69884 1.37004 1.13752 1.32538 0.86589 0.84845 0.78481 0.78399 1.19834 1.21131 1.21094 1.21677 0.93869 1.00049 0.98798 1.22126 0.99052 0.98817 0.86608 0.92320 0.92291 0.91266 0.89287 0.87796 0.89847 0.91165 0.90261 0.94141 0.90125 0.95888 0.92376 0.93947 0.88957 0.96150 0.93178 0.92480 0.93102 0.92330 0.95688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.62 5.76 -27.88 -0.16 -0.78 16 3 C -0.02 -0.34 5.82 -35.31 -0.21 -0.54 16 4 O 0.09 1.41 11.20 17.17 0.19 1.61 16 5 N -0.38 -6.04 12.07 33.42 0.40 -5.64 16 6 C 0.03 0.51 7.33 -82.10 -0.60 -0.09 16 7 C -0.07 -0.82 10.39 36.01 0.37 -0.45 16 8 C -0.18 -2.61 5.16 -104.42 -0.54 -3.14 16 9 C 0.13 1.82 5.22 -4.97 -0.03 1.79 16 10 N -0.53 -9.06 4.65 -236.11 -1.10 -10.16 16 11 C 0.05 1.01 4.02 -3.83 -0.02 1.00 16 12 C -0.10 -2.41 5.12 -26.66 -0.14 -2.55 16 13 C 0.05 1.16 2.16 -91.65 -0.20 0.97 16 14 C -0.51 -13.86 8.56 -34.44 -0.29 -14.15 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 17 N -0.89 -25.16 11.37 55.43 0.63 -24.53 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 23 C 0.06 1.05 5.46 -3.83 -0.02 1.02 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.29 5.27 -51.93 -0.27 1.02 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.79 7.65 -51.93 -0.40 0.40 16 32 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 33 H 0.08 1.00 7.50 -51.93 -0.39 0.61 16 34 H 0.02 0.43 7.59 -51.93 -0.39 0.04 16 35 H 0.06 1.06 5.12 -51.93 -0.27 0.79 16 36 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.00 8.14 -51.94 -0.42 0.58 16 42 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -29.35 336.66 -8.58 -37.93 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.07 Total: -1.87 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.69 Total: -18.64 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.06 Total: -40.33 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.35 -8.58 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351273218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.676 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds