Wall clock time and date at job start Tue Mar 31 2020 00:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46936 * 2 1 4 4 O 1.34042 * 126.77640 * 269.99289 * 3 2 1 5 5 N 1.20923 * 111.57059 * 180.02562 * 4 3 2 6 6 C 1.30171 * 111.60048 * 359.74287 * 5 4 3 7 7 C 1.50704 * 126.80087 * 180.24977 * 6 5 4 8 8 C 1.35449 * 126.77996 * 90.00437 * 3 2 1 9 9 C 1.50701 * 128.00589 * 359.95204 * 8 3 2 10 10 N 1.46906 * 109.46965 * 90.00688 * 9 8 3 11 11 C 1.46853 * 110.99832 * 294.21171 * 10 9 8 12 12 C 1.53033 * 109.52262 * 174.16246 * 11 10 9 13 13 C 1.53112 * 109.27992 * 59.17361 * 12 11 10 14 14 C 1.50701 * 109.57672 * 182.40672 * 13 12 11 15 15 H 1.08003 * 119.99742 * 119.71365 * 14 13 12 16 16 C 1.37876 * 120.00476 * 299.72309 * 14 13 12 17 17 N 1.31520 * 119.99516 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00480 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46944 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47371 * 119.99376 * 18 16 14 21 21 H 1.48503 * 109.47120 * 239.99755 * 18 16 14 22 22 C 1.53120 * 109.16707 * 302.34582 * 13 12 11 23 23 C 1.46844 * 110.99887 * 170.00048 * 10 9 8 24 24 H 1.09003 * 109.47372 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.46828 * 60.00351 * 1 2 3 26 26 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46934 * 239.99804 * 2 1 3 28 28 H 1.09004 * 109.46828 * 119.99649 * 2 1 3 29 29 H 1.08990 * 109.47521 * 270.17131 * 7 6 5 30 30 H 1.09006 * 109.46947 * 30.17722 * 7 6 5 31 31 H 1.09006 * 109.46920 * 150.16841 * 7 6 5 32 32 H 1.08993 * 109.47133 * 330.00726 * 9 8 3 33 33 H 1.08996 * 109.47320 * 210.00466 * 9 8 3 34 34 H 1.09001 * 109.46125 * 294.17808 * 11 10 9 35 35 H 1.09003 * 109.46462 * 54.14202 * 11 10 9 36 36 H 1.09007 * 109.50330 * 299.23709 * 12 11 10 37 37 H 1.09002 * 109.50417 * 179.12117 * 12 11 10 38 38 H 1.09005 * 109.52421 * 62.25399 * 13 12 11 39 39 H 0.97002 * 119.99540 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.49890 * 297.71825 * 22 13 12 41 41 H 1.08989 * 109.54077 * 177.61187 * 22 13 12 42 42 H 1.09000 * 109.46299 * 305.85220 * 23 10 9 43 43 H 1.08998 * 109.46010 * 65.83553 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2999 2.1773 -1.0736 5 7 2.6893 3.2774 -0.7565 6 6 2.7327 3.4158 0.5371 7 6 3.1598 4.6434 1.2998 8 6 2.3027 2.1854 1.0849 9 6 2.1700 1.8128 2.5391 10 7 3.4325 1.2294 3.0122 11 6 3.7054 -0.0485 2.3421 12 6 5.0915 -0.5536 2.7491 13 6 5.1381 -0.7327 4.2690 14 6 6.5183 -1.1735 4.6834 15 1 7.0994 -0.5641 5.3597 16 6 7.0393 -2.3546 4.1991 17 7 6.3315 -3.0968 3.3759 18 14 8.7504 -2.9006 4.7123 19 1 9.3337 -1.8963 5.6377 20 1 8.6658 -4.2154 5.3974 21 1 9.6122 -3.0239 3.5092 22 6 4.8030 0.6008 4.9428 23 6 3.4252 1.0725 4.4722 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 4.2331 4.6011 1.4849 30 1 2.9266 5.5336 0.7156 31 1 2.6284 4.6835 2.2508 32 1 1.3672 1.0850 2.6559 33 1 1.9403 2.7040 3.1230 34 1 2.9520 -0.7800 2.6343 35 1 3.6734 0.0937 1.2618 36 1 5.8468 0.1710 2.4448 37 1 5.2874 -1.5098 2.2638 38 1 4.4097 -1.4859 4.5696 39 1 6.6979 -3.9280 3.0354 40 1 5.5537 1.3436 4.6729 41 1 4.7928 0.4701 6.0248 42 1 3.1897 2.0288 4.9391 43 1 2.6733 0.3356 4.7544 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351273218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:26 Heat of formation + Delta-G solvation = 26.177555 kcal Electronic energy + Delta-G solvation = -22640.837766 eV Core-core repulsion = 19494.761751 eV Total energy + Delta-G solvation = -3146.076014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.87766 -39.93229 -36.81461 -35.50873 -35.17855 -33.15766 -31.44935 -31.14670 -29.57944 -28.50712 -26.43511 -24.77310 -23.77480 -23.45609 -22.03331 -20.79715 -20.33692 -18.66153 -18.41337 -17.88601 -16.84370 -16.26573 -15.97786 -15.87990 -15.46147 -14.90473 -14.71734 -14.36516 -14.25046 -14.17032 -14.03265 -13.77302 -13.52369 -13.37592 -12.98523 -12.96563 -12.86797 -12.56844 -12.36473 -12.31808 -12.20716 -11.99635 -11.83734 -11.65706 -11.32860 -10.85511 -10.74577 -10.62193 -10.36626 -10.15173 -9.13720 -8.07380 -6.19676 0.49633 1.24263 1.39346 1.41985 1.52551 2.16915 2.44236 3.14671 3.20179 3.32604 3.53306 3.78773 4.02370 4.20437 4.24573 4.29410 4.32227 4.35500 4.44529 4.52739 4.63951 4.68558 4.74179 4.76887 4.81523 4.89083 4.91503 4.98444 5.01472 5.02565 5.10018 5.13051 5.26132 5.28428 5.33918 5.36021 5.58801 5.64376 6.02288 6.04308 6.28928 6.34893 6.43013 6.92228 7.32769 7.47952 8.97270 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.004643 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.304029 B = 6029.495690 C = 6381.332610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.021 4.021 4 O 0.079 5.921 5 N -0.402 5.402 6 C 0.030 3.970 7 C -0.071 4.071 8 C -0.195 4.195 9 C 0.135 3.865 10 N -0.539 5.539 11 C 0.070 3.930 12 C -0.094 4.094 13 C 0.044 3.956 14 C -0.531 4.531 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.283 1.283 22 C -0.100 4.100 23 C 0.068 3.932 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.060 0.940 38 H -0.007 1.007 39 H 0.259 0.741 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 9.706 -3.758 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 C -0.086 4.086 4 O 0.018 5.982 5 N -0.112 5.112 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.200 4.200 9 C 0.008 3.992 10 N -0.264 5.264 11 C -0.057 4.057 12 C -0.133 4.133 13 C 0.026 3.974 14 C -0.569 4.569 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.775 3.225 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.209 1.209 22 C -0.138 4.138 23 C -0.059 4.059 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.011 0.989 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.353 10.661 -4.997 17.065 hybrid contribution 0.595 -1.546 0.868 1.870 sum -11.758 9.115 -4.128 15.440 Atomic orbital electron populations 1.21735 0.91706 1.03759 1.02644 1.20466 0.98117 0.85347 1.05400 1.24738 1.01027 0.97165 0.85653 1.84729 1.62097 1.17851 1.33501 1.73791 1.19742 1.00453 1.17193 1.23911 1.00261 0.99021 0.89712 1.20239 1.02445 0.90798 0.99301 1.20979 1.07847 0.93675 0.97469 1.20306 0.90390 1.00264 0.88280 1.61888 1.32885 1.25788 1.05880 1.22134 0.96982 0.88826 0.97801 1.21406 0.93821 0.98941 0.99086 1.18661 0.94382 0.92051 0.92318 1.21632 1.02239 1.05750 1.27327 0.93270 1.25698 1.00883 0.96761 0.95183 1.70010 1.38444 1.13982 1.33218 0.85641 0.80612 0.78162 0.78060 1.19292 1.20539 1.20899 1.21543 0.96023 0.97434 0.98804 1.22062 0.96587 1.00624 0.86650 0.92191 0.91915 0.89671 0.88473 0.88749 0.90223 0.90038 0.88208 0.92832 0.87613 0.95722 0.91778 0.96071 0.92179 0.98931 0.93149 0.93399 0.92604 0.88767 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.06 -1.18 5.76 29.85 0.17 -1.01 16 3 C -0.02 -0.57 5.82 25.04 0.15 -0.43 16 4 O 0.08 2.37 11.20 71.62 0.80 3.17 16 5 N -0.40 -12.63 12.07 -49.57 -0.60 -13.23 16 6 C 0.03 0.84 7.33 43.58 0.32 1.16 16 7 C -0.07 -1.48 10.39 71.24 0.74 -0.74 16 8 C -0.20 -5.30 5.16 -19.73 -0.10 -5.40 16 9 C 0.13 3.36 5.22 85.56 0.45 3.81 16 10 N -0.54 -17.32 4.65 -900.91 -4.19 -21.51 16 11 C 0.07 2.62 4.02 86.32 0.35 2.96 16 12 C -0.09 -4.49 5.12 30.64 0.16 -4.34 16 13 C 0.04 2.21 2.16 -11.46 -0.02 2.18 16 14 C -0.53 -29.48 8.56 25.60 0.22 -29.26 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C 0.01 0.73 5.31 84.65 0.45 1.18 16 17 N -0.92 -52.85 11.37 21.45 0.24 -52.60 16 18 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C -0.10 -4.01 5.32 30.65 0.16 -3.85 16 23 C 0.07 2.14 5.46 86.33 0.47 2.61 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.23 5.27 -2.38 -0.01 2.22 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.10 1.65 7.65 -2.38 -0.02 1.64 16 32 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 33 H 0.11 2.14 7.50 -2.39 -0.02 2.12 16 34 H 0.02 0.91 7.59 -2.39 -0.02 0.90 16 35 H 0.06 2.30 5.12 -2.39 -0.01 2.29 16 36 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.06 3.24 6.18 -2.39 -0.01 3.22 16 38 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 39 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.09 2.35 8.02 -2.39 -0.02 2.33 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -64.21 336.66 3.48 -60.72 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.98 Total: 10.15 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 4.22 Total: -32.70 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.54 Total: -87.34 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.80 Total: 3.17 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.21 3.48 -60.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351273218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.901 kcal (2) G-P(sol) polarization free energy of solvation -64.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds