Wall clock time and date at job start Tue Mar 31 2020 00:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47301 * 118.99480 * 3 2 1 5 5 C 1.52994 * 109.47301 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46946 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47118 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99734 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.65008 * 0.02562 * 9 7 6 11 11 C 1.54325 * 107.27065 * 178.92146 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 C 1.52996 * 111.00814 * 153.57356 * 12 11 10 15 15 N 1.46503 * 109.46859 * 66.45811 * 14 12 11 16 16 C 1.36934 * 120.00182 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00309 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00509 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99961 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47203 * 89.99863 * 20 18 16 22 22 H 1.48504 * 109.47216 * 209.99629 * 20 18 16 23 23 H 1.48502 * 109.47052 * 329.99844 * 20 18 16 24 24 C 1.47425 * 125.64110 * 180.02562 * 9 7 6 25 25 H 4.44657 * 5.63200 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47925 * 358.99131 * 3 2 1 27 27 H 1.09007 * 109.47119 * 238.99101 * 3 2 1 28 28 H 1.09003 * 109.46554 * 59.99042 * 4 3 2 29 29 H 1.09001 * 109.46605 * 300.00298 * 4 3 2 30 30 H 1.09000 * 109.46972 * 59.99911 * 5 4 3 31 31 H 1.08999 * 109.47100 * 299.99619 * 5 4 3 32 32 H 1.09007 * 109.46721 * 60.00323 * 6 5 4 33 33 H 1.08992 * 109.47575 * 300.00446 * 6 5 4 34 34 H 1.09000 * 109.88350 * 59.50355 * 10 9 7 35 35 H 1.08998 * 109.88602 * 298.34021 * 10 9 7 36 36 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 37 37 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 38 38 H 1.08996 * 109.47362 * 186.45309 * 14 12 11 39 39 H 1.08999 * 109.47432 * 306.46119 * 14 12 11 40 40 H 0.97007 * 120.00042 * 359.97438 * 15 14 12 41 41 H 0.96997 * 120.00400 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.36633 * 85.31776 * 24 9 7 43 43 H 1.08996 * 110.37033 * 322.98156 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.7001 -1.2617 5 6 4.6857 0.7014 -1.2614 6 6 5.1953 1.4003 -2.5235 7 6 6.7024 1.4021 -2.5229 8 8 7.3090 0.8940 -1.6038 9 7 7.3759 1.9684 -3.5437 10 6 6.7694 2.6170 -4.7154 11 6 7.9225 3.1390 -5.5983 12 6 9.1021 3.2543 -4.5969 13 1 9.0512 4.1894 -4.0393 14 6 10.4463 3.1189 -5.3150 15 7 10.6422 4.2662 -6.2048 16 6 11.7826 4.3626 -6.9567 17 1 12.5374 3.5926 -6.8941 18 6 11.9680 5.4493 -7.8001 19 7 13.0643 5.5423 -8.5226 20 14 10.6623 6.7808 -7.9089 21 1 10.9427 7.8328 -6.8990 22 1 10.6795 7.3812 -9.2670 23 1 9.3267 6.1868 -7.6471 24 6 8.8430 2.0399 -3.6703 25 1 -1.0501 0.0000 0.0004 26 1 3.0099 -1.0266 0.0181 27 1 3.0091 0.5303 0.8809 28 1 2.7918 1.7274 -1.2798 29 1 2.7926 0.1706 -2.1425 30 1 5.0498 -0.3258 -1.2432 31 1 5.0484 1.2312 -0.3806 32 1 4.8311 2.4275 -2.5421 33 1 4.8326 0.8702 -3.4040 34 1 6.1418 3.4487 -4.3952 35 1 6.1739 1.8938 -5.2727 36 1 7.6760 4.1144 -6.0176 37 1 8.1573 2.4283 -6.3906 38 1 11.2498 3.0885 -4.5792 39 1 10.4545 2.1996 -5.9005 40 1 9.9638 4.9573 -6.2618 41 1 13.1941 6.3019 -9.1117 42 1 9.2296 1.1273 -4.1238 43 1 9.3005 2.2030 -2.6945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480637980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:25 Heat of formation + Delta-G solvation = 10.352350 kcal Electronic energy + Delta-G solvation = -20609.506884 eV Core-core repulsion = 17462.744638 eV Total energy + Delta-G solvation = -3146.762246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18029 -37.94240 -36.39392 -34.88490 -33.50901 -32.29304 -30.77969 -30.07457 -29.22333 -26.31582 -24.76771 -23.02413 -22.12395 -21.47265 -20.22955 -19.23205 -18.35521 -17.66717 -17.11945 -16.53889 -16.04539 -15.38020 -14.85468 -14.62568 -14.49088 -13.94024 -13.69155 -13.57091 -13.47466 -13.14374 -12.74374 -12.63486 -12.47682 -12.11096 -11.97305 -11.83187 -11.62343 -11.57277 -11.02673 -10.97521 -10.71070 -10.64497 -10.56270 -10.52746 -10.44888 -10.16329 -9.88042 -9.61787 -8.93374 -8.70752 -7.26898 -5.79415 -3.15463 2.44317 2.48781 2.54781 2.89963 3.32859 3.36205 3.42317 3.96536 4.30150 4.53198 4.55720 4.57678 4.61495 4.70512 4.87276 4.96271 4.99669 5.14792 5.18203 5.27255 5.34400 5.39721 5.43580 5.49541 5.54191 5.61820 5.68294 5.72990 5.79197 5.85964 5.87377 5.92707 6.00444 6.09916 6.16176 6.30549 6.59944 6.69891 7.26116 7.44701 7.96358 8.07508 8.39288 9.18049 9.90084 10.09734 11.38928 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041123 B = 0.002472 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.722745 B =11324.656772 C =11833.171150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.136 4.136 7 C 0.525 3.475 8 O -0.545 6.545 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.110 4.110 13 H 0.083 0.917 14 C 0.168 3.832 15 N -0.754 5.754 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.113 3.887 25 H 0.216 0.784 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.246 -9.246 13.490 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.176 4.176 7 C 0.315 3.685 8 O -0.423 6.423 9 N -0.353 5.353 10 C -0.023 4.023 11 C -0.163 4.163 12 C -0.130 4.130 13 H 0.102 0.898 14 C 0.041 3.959 15 N -0.400 5.400 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.010 4.010 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.730 -9.615 13.941 28.345 hybrid contribution -1.093 1.139 -0.357 1.618 sum -23.823 -8.475 13.584 28.704 Atomic orbital electron populations 1.24923 0.96014 1.01368 1.01040 1.23233 0.94671 1.00200 1.00322 1.18775 0.84490 1.02388 0.99528 1.21562 0.95331 1.01111 0.97194 1.21358 0.93859 1.01895 0.97173 1.21653 0.91759 1.03314 1.00851 1.20371 0.89990 0.77506 0.80681 1.90701 1.70554 1.45772 1.35243 1.48598 1.07880 1.57258 1.21570 1.22120 0.96835 0.96810 0.86563 1.22679 0.93504 1.02530 0.97558 1.22625 0.96385 0.97938 0.96037 0.89818 1.20525 0.91993 0.91323 0.92084 1.42649 1.22266 1.24172 1.50893 1.19060 0.95530 1.06524 1.16367 0.89180 1.24680 0.97176 0.98319 0.98998 1.69701 1.26321 1.31683 1.30433 0.86537 0.81879 0.82816 0.77183 1.21106 1.21736 1.20368 1.22239 0.79842 0.98492 1.00410 0.76738 0.89376 0.89377 0.91450 0.91441 0.90857 0.90856 0.88962 0.88944 0.91493 0.91404 0.89943 0.89854 0.95080 0.95136 0.80671 0.93037 0.91026 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.18 -1.51 13.34 -37.12 -0.50 -2.00 16 3 C -0.02 -0.10 5.70 -29.51 -0.17 -0.27 16 4 C -0.11 -0.72 5.17 -26.73 -0.14 -0.86 16 5 C -0.10 -0.81 4.50 -26.73 -0.12 -0.93 16 6 C -0.14 -1.10 4.89 -27.88 -0.14 -1.24 16 7 C 0.53 6.49 7.85 -10.98 -0.09 6.41 16 8 O -0.55 -8.72 16.24 5.56 0.09 -8.63 16 9 N -0.62 -7.47 3.33 -170.51 -0.57 -8.04 16 10 C 0.10 0.99 6.49 -3.07 -0.02 0.97 16 11 C -0.12 -1.55 6.13 -24.90 -0.15 -1.70 16 12 C -0.11 -1.57 3.11 -88.46 -0.27 -1.84 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.17 3.07 5.71 -4.04 -0.02 3.05 16 15 N -0.75 -17.23 5.26 -59.91 -0.32 -17.55 16 16 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 20 Si 0.89 21.60 27.74 -169.99 -4.71 16.89 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 24 C 0.11 1.50 6.38 -2.51 -0.02 1.49 16 25 H 0.22 0.88 7.80 -54.09 -0.42 0.45 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 40 H 0.36 7.95 5.40 -40.82 -0.22 7.73 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 43 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -33.64 359.26 -8.03 -41.67 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.40 Total: 3.46 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.32 Total: -4.92 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.11 Total: -53.88 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.64 -8.03 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480637980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.025 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds