Wall clock time and date at job start Tue Mar 31 2020 00:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47301 * 118.99480 * 3 2 1 5 5 C 1.52994 * 109.47301 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46946 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47118 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99734 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.65008 * 0.02562 * 9 7 6 11 11 C 1.54325 * 107.27065 * 178.92146 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 C 1.52996 * 111.00814 * 153.57356 * 12 11 10 15 15 N 1.46503 * 109.46859 * 66.45811 * 14 12 11 16 16 C 1.36934 * 120.00182 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00309 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00509 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99961 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47203 * 89.99863 * 20 18 16 22 22 H 1.48504 * 109.47216 * 209.99629 * 20 18 16 23 23 H 1.48502 * 109.47052 * 329.99844 * 20 18 16 24 24 C 1.47425 * 125.64110 * 180.02562 * 9 7 6 25 25 H 4.44657 * 5.63200 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47925 * 358.99131 * 3 2 1 27 27 H 1.09007 * 109.47119 * 238.99101 * 3 2 1 28 28 H 1.09003 * 109.46554 * 59.99042 * 4 3 2 29 29 H 1.09001 * 109.46605 * 300.00298 * 4 3 2 30 30 H 1.09000 * 109.46972 * 59.99911 * 5 4 3 31 31 H 1.08999 * 109.47100 * 299.99619 * 5 4 3 32 32 H 1.09007 * 109.46721 * 60.00323 * 6 5 4 33 33 H 1.08992 * 109.47575 * 300.00446 * 6 5 4 34 34 H 1.09000 * 109.88350 * 59.50355 * 10 9 7 35 35 H 1.08998 * 109.88602 * 298.34021 * 10 9 7 36 36 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 37 37 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 38 38 H 1.08996 * 109.47362 * 186.45309 * 14 12 11 39 39 H 1.08999 * 109.47432 * 306.46119 * 14 12 11 40 40 H 0.97007 * 120.00042 * 359.97438 * 15 14 12 41 41 H 0.96997 * 120.00400 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.36633 * 85.31776 * 24 9 7 43 43 H 1.08996 * 110.37033 * 322.98156 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.7001 -1.2617 5 6 4.6857 0.7014 -1.2614 6 6 5.1953 1.4003 -2.5235 7 6 6.7024 1.4021 -2.5229 8 8 7.3090 0.8940 -1.6038 9 7 7.3759 1.9684 -3.5437 10 6 6.7694 2.6170 -4.7154 11 6 7.9225 3.1390 -5.5983 12 6 9.1021 3.2543 -4.5969 13 1 9.0512 4.1894 -4.0393 14 6 10.4463 3.1189 -5.3150 15 7 10.6422 4.2662 -6.2048 16 6 11.7826 4.3626 -6.9567 17 1 12.5374 3.5926 -6.8941 18 6 11.9680 5.4493 -7.8001 19 7 13.0643 5.5423 -8.5226 20 14 10.6623 6.7808 -7.9089 21 1 10.9427 7.8328 -6.8990 22 1 10.6795 7.3812 -9.2670 23 1 9.3267 6.1868 -7.6471 24 6 8.8430 2.0399 -3.6703 25 1 -1.0501 0.0000 0.0004 26 1 3.0099 -1.0266 0.0181 27 1 3.0091 0.5303 0.8809 28 1 2.7918 1.7274 -1.2798 29 1 2.7926 0.1706 -2.1425 30 1 5.0498 -0.3258 -1.2432 31 1 5.0484 1.2312 -0.3806 32 1 4.8311 2.4275 -2.5421 33 1 4.8326 0.8702 -3.4040 34 1 6.1418 3.4487 -4.3952 35 1 6.1739 1.8938 -5.2727 36 1 7.6760 4.1144 -6.0176 37 1 8.1573 2.4283 -6.3906 38 1 11.2498 3.0885 -4.5792 39 1 10.4545 2.1996 -5.9005 40 1 9.9638 4.9573 -6.2618 41 1 13.1941 6.3019 -9.1117 42 1 9.2296 1.1273 -4.1238 43 1 9.3005 2.2030 -2.6945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480637980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:24 Heat of formation + Delta-G solvation = -10.351725 kcal Electronic energy + Delta-G solvation = -20610.404680 eV Core-core repulsion = 17462.744638 eV Total energy + Delta-G solvation = -3147.660043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14401 -39.00432 -36.99926 -36.55320 -34.21660 -33.89177 -32.29881 -30.79599 -30.27884 -27.56407 -25.83532 -23.99322 -23.81966 -22.11252 -21.47536 -20.11212 -19.63800 -18.85351 -18.05359 -17.47863 -16.92098 -16.49556 -16.18477 -15.77829 -15.39708 -15.09559 -14.90574 -14.88018 -14.36815 -14.21673 -14.04877 -13.77500 -13.53892 -13.29993 -13.01021 -12.80144 -12.71047 -12.56341 -12.17798 -12.11782 -12.03104 -11.82134 -11.74816 -11.63654 -11.55696 -11.13898 -10.96630 -10.96068 -10.83287 -9.66231 -9.29573 -8.01492 -5.35958 1.38913 1.44435 1.51705 1.63681 1.87324 1.94231 2.02126 2.50405 3.27860 3.31981 3.48857 3.63759 3.69011 3.86933 3.97990 4.05349 4.12827 4.31568 4.36912 4.42150 4.44517 4.51820 4.61769 4.64444 4.74319 4.81862 4.83559 4.86316 4.92057 5.01464 5.07653 5.11668 5.19498 5.22898 5.26735 5.34977 5.39992 5.46638 5.76146 6.21645 6.54629 6.73454 7.08898 7.15070 7.83455 8.04791 9.19962 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041123 B = 0.002472 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.722745 B =11324.656772 C =11833.171150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.215 4.215 3 C -0.018 4.018 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.128 4.128 7 C 0.519 3.481 8 O -0.591 6.591 9 N -0.620 5.620 10 C 0.104 3.896 11 C -0.124 4.124 12 C -0.100 4.100 13 H 0.086 0.914 14 C 0.166 3.834 15 N -0.753 5.753 16 C -0.238 4.238 17 H 0.053 0.947 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.959 3.041 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.241 1.241 24 C 0.116 3.884 25 H 0.241 0.759 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.369 0.631 41 H 0.258 0.742 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.018 -8.582 13.705 31.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.215 4.215 3 C -0.055 4.055 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.167 4.167 7 C 0.310 3.690 8 O -0.472 6.472 9 N -0.354 5.354 10 C -0.018 4.018 11 C -0.162 4.162 12 C -0.120 4.120 13 H 0.104 0.896 14 C 0.040 3.960 15 N -0.399 5.399 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.165 1.165 24 C -0.008 4.008 25 H 0.257 0.743 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.552 -8.973 14.176 31.409 hybrid contribution 0.166 0.824 -0.379 0.922 sum -26.386 -8.150 13.797 30.870 Atomic orbital electron populations 1.25693 0.96975 1.00534 1.00182 1.23732 0.95556 1.01061 1.01201 1.18831 0.84007 1.02748 0.99902 1.21452 0.93931 1.01461 0.97237 1.21288 0.94819 1.00983 0.96761 1.21708 0.88212 1.05022 1.01739 1.21183 0.91646 0.76398 0.79770 1.90684 1.71777 1.47742 1.36969 1.48695 1.07141 1.57232 1.22306 1.22247 0.95983 0.98145 0.85390 1.22679 0.93420 1.02844 0.97278 1.22408 0.94751 0.98381 0.96441 0.89555 1.20626 0.94413 0.89648 0.91360 1.42575 1.20838 1.25660 1.50811 1.19025 0.96209 1.05275 1.16386 0.92924 1.25583 0.99886 1.01326 0.98978 1.69901 1.29068 1.32760 1.31842 0.85359 0.80317 0.79128 0.76691 1.20680 1.22383 1.16490 1.22053 0.81336 0.97898 0.99464 0.74304 0.89074 0.89111 0.90899 0.90844 0.92079 0.92130 0.86699 0.86621 0.88971 0.88878 0.89431 0.90579 0.96025 0.95320 0.79777 0.93346 0.91372 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.22 -3.22 13.34 31.13 0.42 -2.81 16 3 C -0.02 -0.22 5.70 28.79 0.16 -0.05 16 4 C -0.10 -1.07 5.17 30.59 0.16 -0.92 16 5 C -0.10 -1.38 4.50 30.59 0.14 -1.25 16 6 C -0.13 -1.66 4.89 29.85 0.15 -1.51 16 7 C 0.52 11.81 7.85 87.66 0.69 12.50 16 8 O -0.59 -18.71 16.24 -3.02 -0.05 -18.76 16 9 N -0.62 -13.44 3.33 -811.76 -2.70 -16.14 16 10 C 0.10 1.63 6.49 86.73 0.56 2.19 16 11 C -0.12 -2.68 6.13 31.78 0.19 -2.49 16 12 C -0.10 -2.67 3.11 -9.39 -0.03 -2.70 16 13 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.17 6.01 5.71 86.38 0.49 6.50 16 15 N -0.75 -33.71 5.26 -343.46 -1.81 -35.52 16 16 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.99 -62.93 13.97 21.65 0.30 -62.63 16 20 Si 0.96 43.90 27.74 68.60 1.90 45.80 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.24 -9.48 6.52 99.48 0.65 -8.83 16 24 C 0.12 2.97 6.38 86.86 0.55 3.52 16 25 H 0.24 1.38 7.80 -4.41 -0.03 1.34 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 31 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.77 8.01 -2.39 -0.02 1.75 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 1.06 8.11 -2.39 -0.02 1.04 16 40 H 0.37 15.30 5.40 -92.70 -0.50 14.80 16 41 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 43 H 0.07 1.85 8.04 -2.39 -0.02 1.84 16 Total: -1.00 -74.92 359.26 4.32 -70.61 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.40 Total: 20.99 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 6.26 Total: -4.36 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.20 Total: -114.28 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.90 Total: 45.80 kcal Total: -74.92 4.32 -70.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480637980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.255 kcal (2) G-P(sol) polarization free energy of solvation -74.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds