Wall clock time and date at job start Tue Mar 31 2020 01:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47112 * 120.00003 * 2 1 4 4 C 1.50697 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.32868 * 120.00003 * 180.02562 * 3 2 1 6 6 C 1.50706 * 120.00240 * 186.13072 * 5 3 2 7 7 C 1.50702 * 109.47244 * 125.96492 * 6 5 3 8 8 O 1.21279 * 119.99807 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99990 * 180.02562 * 7 6 5 10 10 C 1.47022 * 125.64596 * 0.02562 * 9 7 6 11 11 C 1.54330 * 107.26964 * 178.89851 * 10 9 7 12 12 C 1.55158 * 102.93817 * 337.80661 * 11 10 9 13 13 H 1.09008 * 111.00496 * 277.42254 * 12 11 10 14 14 C 1.53006 * 111.00300 * 153.57849 * 12 11 10 15 15 N 1.46501 * 109.46819 * 66.45253 * 14 12 11 16 16 C 1.36938 * 119.99510 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00284 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99832 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00099 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46842 * 90.00389 * 20 18 16 22 22 H 1.48502 * 109.46690 * 210.00149 * 20 18 16 23 23 H 1.48496 * 109.46836 * 330.00322 * 20 18 16 24 24 C 1.47422 * 125.64929 * 179.97438 * 9 7 6 25 25 H 1.08007 * 119.99925 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00254 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99680 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47294 * 213.42551 * 4 3 2 29 29 H 1.08999 * 109.47412 * 333.43442 * 4 3 2 30 30 H 1.09005 * 109.46860 * 93.42824 * 4 3 2 31 31 H 1.07996 * 120.00151 * 6.13118 * 5 3 2 32 32 H 1.08999 * 109.46667 * 5.96689 * 6 5 3 33 33 H 1.08998 * 109.47173 * 245.96762 * 6 5 3 34 34 H 1.08994 * 109.88629 * 59.48282 * 10 9 7 35 35 H 1.09004 * 109.88168 * 298.31140 * 10 9 7 36 36 H 1.08998 * 110.71955 * 96.16868 * 11 10 9 37 37 H 1.08999 * 110.72000 * 219.44693 * 11 10 9 38 38 H 1.09000 * 109.47089 * 186.45177 * 14 12 11 39 39 H 1.08995 * 109.46651 * 306.45344 * 14 12 11 40 40 H 0.96998 * 120.00806 * 359.97438 * 15 14 12 41 41 H 0.96997 * 120.00095 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.36632 * 85.33272 * 24 9 7 43 43 H 1.09002 * 110.45883 * 323.05819 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2740 0.0000 4 6 1.3108 2.5791 0.0006 5 6 3.3929 1.2740 -0.0005 6 6 4.1466 2.5716 0.1389 7 6 5.1208 2.4663 1.2838 8 8 5.1955 1.4388 1.9238 9 7 5.9084 3.5142 1.5970 10 6 5.9199 4.8133 0.9087 11 6 6.9549 5.7037 1.6281 12 6 7.0604 5.0497 3.0312 13 1 6.2549 5.3896 3.6823 14 6 8.4264 5.3249 3.6633 15 7 8.5544 6.7569 3.9449 16 6 9.7008 7.2426 4.5151 17 1 10.5103 6.5700 4.7575 18 6 9.8225 8.5995 4.7816 19 7 8.8358 9.4191 4.4866 20 14 11.3861 9.2620 5.5600 21 1 12.3487 9.6383 4.4939 22 1 11.0628 10.4574 6.3796 23 1 11.9893 8.2168 6.4254 24 6 6.9002 3.5479 2.6872 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8686 -0.9354 -0.0004 28 1 1.8717 3.3228 -0.5655 29 1 0.3329 2.4344 -0.4586 30 1 1.1827 2.9242 1.0266 31 1 3.9329 0.3441 -0.1008 32 1 3.4431 3.3811 0.3337 33 1 4.6903 2.7769 -0.7832 34 1 4.9328 5.2719 0.9660 35 1 6.2083 4.6779 -0.1337 36 1 7.9155 5.6708 1.1141 37 1 6.5932 6.7290 1.7068 38 1 8.5167 4.7623 4.5924 39 1 9.2136 5.0182 2.9747 40 1 7.8276 7.3611 3.7269 41 1 8.9206 10.3672 4.6732 42 1 7.8497 3.1328 2.3492 43 1 6.5332 2.9974 3.5534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480661465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:37 Heat of formation + Delta-G solvation = 3.121084 kcal Electronic energy + Delta-G solvation = -20883.680354 eV Core-core repulsion = 17736.604536 eV Total energy + Delta-G solvation = -3147.075818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10824 -37.93739 -36.91244 -34.69491 -32.84485 -32.11840 -30.27122 -29.37255 -28.70700 -26.96059 -25.15386 -23.12838 -22.42740 -21.21188 -20.03371 -19.09798 -18.08135 -17.34954 -17.05446 -16.40591 -16.00149 -15.42232 -14.70148 -14.37001 -14.25572 -13.83274 -13.63026 -13.51586 -13.23236 -13.10635 -12.73379 -12.65106 -12.48838 -12.37648 -11.86303 -11.68844 -11.63965 -11.20344 -11.10791 -10.87742 -10.75326 -10.68078 -10.51469 -10.39384 -10.07100 -9.86256 -9.70791 -8.90054 -8.63005 -8.44705 -6.95111 -5.79280 -3.07870 1.09418 2.60477 2.72292 3.08859 3.42343 3.47803 3.49350 4.41352 4.43003 4.57719 4.62251 4.74314 4.86817 4.97275 5.01569 5.08317 5.12832 5.19484 5.30147 5.34648 5.44790 5.47803 5.54852 5.59296 5.64173 5.73785 5.89034 6.02113 6.02616 6.09707 6.11408 6.21501 6.23954 6.37455 6.42582 6.44949 6.69640 6.70332 6.82669 7.52214 7.68306 8.14288 8.39726 9.51197 10.08002 10.43002 11.43633 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048143 B = 0.002557 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.458183 B =10945.601316 C =11202.426076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.113 4.113 7 C 0.531 3.469 8 O -0.543 6.543 9 N -0.618 5.618 10 C 0.098 3.902 11 C -0.121 4.121 12 C -0.106 4.106 13 H 0.084 0.916 14 C 0.164 3.836 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.112 3.888 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 -13.803 -12.470 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.180 4.180 5 C -0.135 4.135 6 C -0.153 4.153 7 C 0.319 3.681 8 O -0.420 6.420 9 N -0.352 5.352 10 C -0.025 4.025 11 C -0.158 4.158 12 C -0.125 4.125 13 H 0.102 0.898 14 C 0.036 3.964 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.010 4.010 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.281 -14.405 -12.072 23.604 hybrid contribution 0.673 0.685 0.348 1.021 sum -13.608 -13.720 -11.723 22.602 Atomic orbital electron populations 1.24401 0.95700 1.02008 1.00639 1.21855 0.95300 0.96066 0.99911 1.20551 0.93882 0.94408 1.02343 1.20904 1.00213 0.94521 1.02389 1.22791 0.93874 0.97776 0.99047 1.20782 0.98053 0.98420 0.98006 1.20139 0.80507 0.82234 0.85186 1.90702 1.68944 1.29082 1.53285 1.48582 1.38972 1.13739 1.33922 1.22168 1.00419 0.83407 0.96495 1.22641 0.98844 0.99091 0.95273 1.22567 1.00406 0.92961 0.96586 0.89788 1.20548 0.91707 0.87727 0.96408 1.42301 1.18931 1.01648 1.74636 1.19231 0.93982 0.91555 1.32258 0.91152 1.24740 0.98018 0.96129 1.02132 1.69651 1.31639 1.03212 1.53763 0.86179 0.82753 0.78384 0.78820 1.21725 1.21779 1.20753 1.22250 0.91602 0.97323 0.89840 0.88195 0.88052 0.86823 0.91294 0.91445 0.91325 0.86373 0.87963 0.87966 0.91477 0.91489 0.90160 0.89432 0.95997 0.95971 0.78238 0.93515 0.91226 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 14.11 28.88 0.41 -1.01 16 2 C -0.11 -1.00 9.83 -37.83 -0.37 -1.37 16 3 C -0.11 -1.05 5.98 -102.88 -0.62 -1.67 16 4 C -0.12 -0.94 8.55 36.00 0.31 -0.63 16 5 C -0.12 -1.19 8.45 -36.16 -0.31 -1.50 16 6 C -0.11 -1.08 4.95 -29.03 -0.14 -1.23 16 7 C 0.53 7.19 7.84 -10.99 -0.09 7.10 16 8 O -0.54 -9.41 16.29 5.56 0.09 -9.32 16 9 N -0.62 -8.05 3.33 -170.52 -0.57 -8.62 16 10 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 11 C -0.12 -1.63 6.13 -24.89 -0.15 -1.78 16 12 C -0.11 -1.63 3.10 -88.47 -0.27 -1.90 16 13 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 14 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 15 N -0.73 -17.92 5.45 -59.91 -0.33 -18.25 16 16 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.11 1.61 6.37 -2.53 -0.02 1.59 16 25 H 0.10 0.61 8.06 -52.48 -0.42 0.18 16 26 H 0.10 0.68 6.09 -52.49 -0.32 0.36 16 27 H 0.11 0.93 8.06 -52.48 -0.42 0.51 16 28 H 0.07 0.45 6.63 -51.93 -0.34 0.10 16 29 H 0.07 0.44 6.26 -51.93 -0.33 0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.12 1.27 8.05 -52.49 -0.42 0.84 16 32 H 0.10 0.83 5.78 -51.93 -0.30 0.53 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.38 9.78 7.53 -40.82 -0.31 9.48 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 43 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -32.33 353.80 -8.35 -40.69 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.04 Total: 5.47 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.54 Total: -5.46 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.17 Total: -53.89 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.33 -8.35 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480661465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.807 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds