Wall clock time and date at job start Tue Mar 31 2020 01:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47112 * 120.00003 * 2 1 4 4 C 1.50697 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.32868 * 120.00003 * 180.02562 * 3 2 1 6 6 C 1.50706 * 120.00240 * 186.13072 * 5 3 2 7 7 C 1.50702 * 109.47244 * 125.96492 * 6 5 3 8 8 O 1.21279 * 119.99807 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99990 * 180.02562 * 7 6 5 10 10 C 1.47022 * 125.64596 * 0.02562 * 9 7 6 11 11 C 1.54330 * 107.26964 * 178.89851 * 10 9 7 12 12 C 1.55158 * 102.93817 * 337.80661 * 11 10 9 13 13 H 1.09008 * 111.00496 * 277.42254 * 12 11 10 14 14 C 1.53006 * 111.00300 * 153.57849 * 12 11 10 15 15 N 1.46501 * 109.46819 * 66.45253 * 14 12 11 16 16 C 1.36938 * 119.99510 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00284 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99832 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00099 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46842 * 90.00389 * 20 18 16 22 22 H 1.48502 * 109.46690 * 210.00149 * 20 18 16 23 23 H 1.48496 * 109.46836 * 330.00322 * 20 18 16 24 24 C 1.47422 * 125.64929 * 179.97438 * 9 7 6 25 25 H 1.08007 * 119.99925 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00254 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99680 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47294 * 213.42551 * 4 3 2 29 29 H 1.08999 * 109.47412 * 333.43442 * 4 3 2 30 30 H 1.09005 * 109.46860 * 93.42824 * 4 3 2 31 31 H 1.07996 * 120.00151 * 6.13118 * 5 3 2 32 32 H 1.08999 * 109.46667 * 5.96689 * 6 5 3 33 33 H 1.08998 * 109.47173 * 245.96762 * 6 5 3 34 34 H 1.08994 * 109.88629 * 59.48282 * 10 9 7 35 35 H 1.09004 * 109.88168 * 298.31140 * 10 9 7 36 36 H 1.08998 * 110.71955 * 96.16868 * 11 10 9 37 37 H 1.08999 * 110.72000 * 219.44693 * 11 10 9 38 38 H 1.09000 * 109.47089 * 186.45177 * 14 12 11 39 39 H 1.08995 * 109.46651 * 306.45344 * 14 12 11 40 40 H 0.96998 * 120.00806 * 359.97438 * 15 14 12 41 41 H 0.96997 * 120.00095 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.36632 * 85.33272 * 24 9 7 43 43 H 1.09002 * 110.45883 * 323.05819 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2740 0.0000 4 6 1.3108 2.5791 0.0006 5 6 3.3929 1.2740 -0.0005 6 6 4.1466 2.5716 0.1389 7 6 5.1208 2.4663 1.2838 8 8 5.1955 1.4388 1.9238 9 7 5.9084 3.5142 1.5970 10 6 5.9199 4.8133 0.9087 11 6 6.9549 5.7037 1.6281 12 6 7.0604 5.0497 3.0312 13 1 6.2549 5.3896 3.6823 14 6 8.4264 5.3249 3.6633 15 7 8.5544 6.7569 3.9449 16 6 9.7008 7.2426 4.5151 17 1 10.5103 6.5700 4.7575 18 6 9.8225 8.5995 4.7816 19 7 8.8358 9.4191 4.4866 20 14 11.3861 9.2620 5.5600 21 1 12.3487 9.6383 4.4939 22 1 11.0628 10.4574 6.3796 23 1 11.9893 8.2168 6.4254 24 6 6.9002 3.5479 2.6872 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8686 -0.9354 -0.0004 28 1 1.8717 3.3228 -0.5655 29 1 0.3329 2.4344 -0.4586 30 1 1.1827 2.9242 1.0266 31 1 3.9329 0.3441 -0.1008 32 1 3.4431 3.3811 0.3337 33 1 4.6903 2.7769 -0.7832 34 1 4.9328 5.2719 0.9660 35 1 6.2083 4.6779 -0.1337 36 1 7.9155 5.6708 1.1141 37 1 6.5932 6.7290 1.7068 38 1 8.5167 4.7623 4.5924 39 1 9.2136 5.0182 2.9747 40 1 7.8276 7.3611 3.7269 41 1 8.9206 10.3672 4.6732 42 1 7.8497 3.1328 2.3492 43 1 6.5332 2.9974 3.5534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480661465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:36 Heat of formation + Delta-G solvation = -16.166310 kcal Electronic energy + Delta-G solvation = -20884.516718 eV Core-core repulsion = 17736.604536 eV Total energy + Delta-G solvation = -3147.912182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16944 -39.02838 -37.71053 -36.42880 -34.03930 -33.33905 -31.83198 -30.37903 -29.61939 -27.83077 -26.67325 -24.50989 -23.90364 -21.97781 -21.34306 -20.05130 -19.15492 -18.78210 -18.18956 -17.50587 -16.93000 -16.47921 -16.39626 -15.50222 -15.37997 -15.09627 -14.88809 -14.77229 -14.34342 -14.10665 -13.89080 -13.70143 -13.63438 -13.25444 -13.00784 -12.93956 -12.74012 -12.52795 -12.31754 -12.21235 -12.12796 -11.80244 -11.73373 -11.66210 -11.59764 -11.38912 -10.95872 -10.92298 -9.68302 -9.12078 -8.98845 -7.94607 -5.22817 0.42264 1.48850 1.49867 1.58331 1.59613 1.90610 2.23350 2.56787 3.37647 3.41835 3.66200 3.73222 3.81818 3.89180 4.00786 4.28966 4.30608 4.32276 4.40288 4.43413 4.46757 4.54540 4.59239 4.64587 4.78101 4.81182 4.86608 4.88582 4.99651 5.02827 5.09073 5.13747 5.24069 5.27943 5.41692 5.47994 5.51010 5.59456 5.79053 6.04173 6.27979 6.51965 7.11566 7.35176 8.09691 8.34577 9.28692 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048143 B = 0.002557 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.458183 B =10945.601316 C =11202.426076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.108 4.108 4 C -0.126 4.126 5 C -0.142 4.142 6 C -0.101 4.101 7 C 0.525 3.475 8 O -0.589 6.589 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.117 4.117 12 C -0.097 4.097 13 H 0.076 0.924 14 C 0.164 3.836 15 N -0.741 5.741 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.118 3.882 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.017 0.983 39 H 0.027 0.973 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -13.746 -13.749 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.108 4.108 4 C -0.182 4.182 5 C -0.161 4.161 6 C -0.139 4.139 7 C 0.316 3.684 8 O -0.470 6.470 9 N -0.352 5.352 10 C -0.018 4.018 11 C -0.155 4.155 12 C -0.117 4.117 13 H 0.095 0.905 14 C 0.037 3.963 15 N -0.384 5.384 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.006 4.006 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.192 -14.369 -13.371 24.820 hybrid contribution 0.889 0.568 0.755 1.298 sum -14.303 -13.801 -12.616 23.541 Atomic orbital electron populations 1.24653 0.95219 1.03226 0.97902 1.21987 0.96070 0.96064 1.02091 1.20834 0.93853 0.95479 1.00620 1.20980 1.00858 0.93755 1.02644 1.22754 0.94334 0.97681 1.01303 1.20776 0.97420 0.98630 0.97119 1.20901 0.80518 0.81367 0.85581 1.90679 1.70352 1.30887 1.55094 1.48658 1.38425 1.14613 1.33465 1.22275 1.00741 0.81625 0.97168 1.22581 0.99610 0.99275 0.94067 1.22345 0.97667 0.94154 0.97484 0.90534 1.20645 0.94248 0.84928 0.96466 1.42458 1.17940 1.03563 1.74407 1.19609 0.94838 0.91867 1.31441 0.90860 1.25528 1.01082 0.96558 1.03437 1.69793 1.33475 1.03140 1.55310 0.85165 0.79278 0.77527 0.77929 1.21285 1.22199 1.19737 1.22057 0.92239 0.96034 0.90238 0.86819 0.87005 0.87173 0.89815 0.90246 0.91495 0.87980 0.85974 0.85444 0.89144 0.88588 0.90758 0.90024 0.96533 0.95550 0.79077 0.93956 0.91087 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 14.11 66.64 0.94 -1.29 16 2 C -0.14 -2.42 9.83 23.42 0.23 -2.18 16 3 C -0.11 -1.89 5.98 -18.71 -0.11 -2.00 16 4 C -0.13 -1.58 8.55 71.24 0.61 -0.98 16 5 C -0.14 -2.80 8.45 24.51 0.21 -2.59 16 6 C -0.10 -1.70 4.95 29.10 0.14 -1.55 16 7 C 0.53 13.63 7.84 87.66 0.69 14.31 16 8 O -0.59 -20.65 16.29 -3.03 -0.05 -20.70 16 9 N -0.62 -15.10 3.33 -811.80 -2.70 -17.80 16 10 C 0.10 1.93 6.49 86.73 0.56 2.50 16 11 C -0.12 -3.01 6.13 31.79 0.19 -2.81 16 12 C -0.10 -2.95 3.10 -9.40 -0.03 -2.98 16 13 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 14 C 0.16 6.35 5.71 86.38 0.49 6.84 16 15 N -0.74 -36.53 5.45 -343.45 -1.87 -38.40 16 16 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 17 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 20 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.12 3.32 6.37 86.85 0.55 3.87 16 25 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 26 H 0.11 1.19 6.09 -2.91 -0.02 1.17 16 27 H 0.11 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.08 0.80 6.63 -2.39 -0.02 0.78 16 29 H 0.08 0.80 6.26 -2.39 -0.01 0.78 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.10 2.27 8.05 -2.91 -0.02 2.25 16 32 H 0.12 1.57 5.78 -2.39 -0.01 1.56 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.03 1.01 8.11 -2.39 -0.02 1.00 16 40 H 0.38 19.44 7.53 -92.71 -0.70 18.74 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 43 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 Total: -1.00 -70.01 353.80 3.76 -66.26 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.28 Total: 25.84 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.79 Total: -5.27 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.29 Total: -113.80 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.01 3.76 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480661465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.089 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds