Wall clock time and date at job start Tue Mar 31 2020 00:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 5 5 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 6 6 C 4.07804 * 109.47170 * 120.00123 * 2 1 3 7 7 O 1.21615 * 120.00074 * 87.08674 * 6 5 4 8 8 N 1.34777 * 120.00084 * 267.08695 * 6 5 4 9 9 C 1.46496 * 119.99875 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47037 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 8 12 12 H 1.09003 * 110.88828 * 305.70057 * 11 10 9 13 13 C 1.55155 * 111.00861 * 181.81592 * 11 10 9 14 14 C 1.54370 * 102.92390 * 206.45060 * 13 11 10 15 15 N 1.47027 * 107.28523 * 22.14217 * 14 13 11 16 16 C 1.36938 * 125.64381 * 181.05675 * 15 14 13 17 17 H 1.08005 * 119.99591 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00439 * 0.03495 * 16 15 14 19 19 N 1.31616 * 119.99553 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00209 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47378 * 59.99949 * 20 18 16 22 22 H 1.48502 * 109.47002 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46928 * 300.00278 * 20 18 16 24 24 C 1.47418 * 108.70581 * 1.08720 * 15 14 13 25 25 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 26 26 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 239.99882 * 2 1 3 29 29 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 32 32 H 0.96999 * 120.00043 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.47374 * 299.99565 * 9 8 6 34 34 H 1.08996 * 109.47565 * 59.99371 * 9 8 6 35 35 H 1.09000 * 109.46986 * 299.99564 * 10 9 8 36 36 H 1.08996 * 109.47407 * 59.99335 * 10 9 8 37 37 H 1.09002 * 110.71819 * 324.79194 * 13 11 10 38 38 H 1.08997 * 110.71933 * 88.05930 * 13 11 10 39 39 H 1.08996 * 109.84746 * 262.73363 * 14 13 11 40 40 H 1.09005 * 110.02445 * 141.64597 * 14 13 11 41 41 H 0.97004 * 119.99911 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36850 * 217.03601 * 24 15 14 43 43 H 1.09001 * 110.45844 * 94.75993 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3297 7 8 3.5443 -2.9412 3.2189 8 7 2.6129 -1.4288 4.5529 9 6 3.1018 -2.1191 5.7490 10 6 2.6530 -1.3565 6.9972 11 6 3.1629 -2.0778 8.2464 12 1 2.8531 -3.1228 8.2455 13 6 2.6887 -1.3582 9.5366 14 6 3.7755 -1.7401 10.5642 15 7 4.9802 -2.1124 9.8080 16 6 6.1644 -2.5346 10.3508 17 1 6.9945 -2.7853 9.7070 18 6 6.2979 -2.6405 11.7285 19 7 5.2860 -2.3356 12.5129 20 14 7.9135 -3.2157 12.4689 21 1 8.9991 -2.2826 12.0740 22 1 7.7977 -3.2431 13.9491 23 1 8.2280 -4.5794 11.9720 24 6 4.7024 -1.9553 8.3688 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 2.0909 -0.6160 4.6413 33 1 2.6968 -3.1308 5.7757 34 1 4.1905 -2.1642 5.7231 35 1 3.0583 -0.3451 6.9703 36 1 1.5643 -1.3110 7.0233 37 1 2.6609 -0.2787 9.3881 38 1 1.7133 -1.7307 9.8496 39 1 3.4377 -2.5858 11.1632 40 1 3.9921 -0.8904 11.2117 41 1 5.3791 -2.4099 13.4756 42 1 5.1923 -2.7451 7.7994 43 1 5.0338 -0.9767 8.0215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481431347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:34 Heat of formation + Delta-G solvation = 17.402562 kcal Electronic energy + Delta-G solvation = -20452.970227 eV Core-core repulsion = 17306.513700 eV Total energy + Delta-G solvation = -3146.456526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75592 -37.79464 -36.79916 -35.26972 -33.09653 -32.25431 -30.74111 -28.98293 -27.70840 -26.81643 -25.03530 -23.91791 -22.37959 -21.60138 -19.97449 -19.72287 -18.63755 -16.87179 -16.41635 -16.12512 -15.75590 -15.11822 -14.97697 -14.55922 -14.23823 -14.07162 -13.69436 -13.63822 -12.76192 -12.52142 -12.46439 -12.27997 -12.00875 -11.93401 -11.89226 -11.80418 -11.55963 -11.10379 -10.86435 -10.75453 -10.69790 -10.61716 -10.34375 -10.13542 -9.96668 -9.84720 -9.75021 -9.58620 -9.19399 -8.55163 -6.77675 -5.66479 -2.99527 1.37221 2.04982 2.92182 3.35594 3.44190 3.48041 3.49447 3.90540 4.44538 4.54373 4.60395 4.66718 4.88092 5.07050 5.09980 5.10481 5.28210 5.29098 5.34305 5.48588 5.51358 5.62397 5.67252 5.68428 5.69739 5.77177 5.87738 6.02785 6.10459 6.21462 6.31645 6.41598 6.57993 6.62478 6.76530 6.96223 7.00427 7.28770 7.61080 7.67784 7.87399 7.98228 8.31606 9.27525 9.88043 10.54494 11.45303 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.002464 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.783327 B =11361.331573 C =11702.242294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.220 4.220 6 C 0.629 3.371 7 O -0.523 6.523 8 N -0.715 5.715 9 C 0.117 3.883 10 C -0.116 4.116 11 C -0.100 4.100 12 H 0.077 0.923 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.924 5.924 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.139 3.861 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.252 0.748 42 H 0.038 0.962 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 7.797 -22.279 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.223 4.223 6 C 0.415 3.585 7 O -0.400 6.400 8 N -0.366 5.366 9 C -0.006 4.006 10 C -0.154 4.154 11 C -0.121 4.121 12 H 0.095 0.905 13 C -0.177 4.177 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.013 3.987 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.622 7.004 -22.074 25.911 hybrid contribution 0.620 0.070 0.553 0.834 sum -11.002 7.074 -21.521 25.184 Atomic orbital electron populations 1.21845 0.92710 1.02863 1.02922 1.18512 0.96280 0.95273 0.90960 1.21849 1.01847 0.93757 1.02925 1.22618 0.94751 0.95591 0.95233 1.20800 1.03401 1.01200 0.96917 1.14710 0.79651 0.83307 0.80862 1.90881 1.38807 1.23825 1.86497 1.45931 1.55722 1.29557 1.05379 1.21602 1.00389 0.96334 0.82231 1.21752 1.00841 0.99694 0.93159 1.22274 0.97624 0.99308 0.92846 0.90507 1.22905 0.99561 0.98973 0.96212 1.21146 0.83704 0.99111 0.90859 1.44482 1.11114 1.78313 0.99418 1.19035 0.89096 1.37168 0.90229 0.90526 1.24805 0.97884 1.01935 0.96014 1.69961 1.29625 1.54478 1.03090 0.86192 0.82903 0.78586 0.78053 1.21206 1.21638 1.21167 1.21618 0.91884 0.97639 0.87580 0.91892 0.91124 0.91955 0.88203 0.91873 0.91910 0.91128 0.76302 0.90964 0.90485 0.91180 0.91542 0.92574 0.92320 0.93714 0.94076 0.93787 0.94409 0.96506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.15 37.16 0.34 -0.33 16 2 C 0.01 0.05 3.30 -93.40 -0.31 -0.26 16 3 C -0.15 -0.69 9.15 37.16 0.34 -0.35 16 4 C -0.08 -0.76 12.56 -37.12 -0.47 -1.22 16 5 C -0.22 -2.62 13.61 -38.84 -0.53 -3.15 16 6 C 0.63 8.73 7.65 -14.33 -0.11 8.62 16 7 O -0.52 -9.38 17.09 5.26 0.09 -9.29 16 8 N -0.72 -8.14 5.55 -62.77 -0.35 -8.49 16 9 C 0.12 1.50 5.55 -4.04 -0.02 1.47 16 10 C -0.12 -1.44 4.84 -26.73 -0.13 -1.57 16 11 C -0.10 -1.68 3.04 -88.47 -0.27 -1.95 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.14 -2.51 6.42 -24.87 -0.16 -2.67 16 14 C 0.18 4.34 5.38 -3.04 -0.02 4.32 16 15 N -0.61 -15.87 3.39 -170.04 -0.58 -16.44 16 16 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 17 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.14 2.89 6.04 -2.53 -0.02 2.87 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.40 3.41 8.44 -40.82 -0.34 3.07 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.11 7.59 -51.93 -0.39 0.72 16 35 H 0.07 0.84 8.04 -51.93 -0.42 0.43 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 40 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -33.94 358.40 -8.86 -42.79 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.38 Total: -3.19 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.59 Total: -1.26 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.35 Total: -52.01 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.94 -8.86 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481431347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.195 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds