Wall clock time and date at job start Tue Mar 31 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 5 5 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 6 6 C 4.07804 * 109.47170 * 120.00123 * 2 1 3 7 7 O 1.21615 * 120.00074 * 87.08674 * 6 5 4 8 8 N 1.34777 * 120.00084 * 267.08695 * 6 5 4 9 9 C 1.46496 * 119.99875 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47037 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 8 12 12 H 1.09003 * 110.88828 * 305.70057 * 11 10 9 13 13 C 1.55155 * 111.00861 * 181.81592 * 11 10 9 14 14 C 1.54370 * 102.92390 * 206.45060 * 13 11 10 15 15 N 1.47027 * 107.28523 * 22.14217 * 14 13 11 16 16 C 1.36938 * 125.64381 * 181.05675 * 15 14 13 17 17 H 1.08005 * 119.99591 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00439 * 0.03495 * 16 15 14 19 19 N 1.31616 * 119.99553 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00209 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47378 * 59.99949 * 20 18 16 22 22 H 1.48502 * 109.47002 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46928 * 300.00278 * 20 18 16 24 24 C 1.47418 * 108.70581 * 1.08720 * 15 14 13 25 25 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 26 26 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 239.99882 * 2 1 3 29 29 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 32 32 H 0.96999 * 120.00043 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.47374 * 299.99565 * 9 8 6 34 34 H 1.08996 * 109.47565 * 59.99371 * 9 8 6 35 35 H 1.09000 * 109.46986 * 299.99564 * 10 9 8 36 36 H 1.08996 * 109.47407 * 59.99335 * 10 9 8 37 37 H 1.09002 * 110.71819 * 324.79194 * 13 11 10 38 38 H 1.08997 * 110.71933 * 88.05930 * 13 11 10 39 39 H 1.08996 * 109.84746 * 262.73363 * 14 13 11 40 40 H 1.09005 * 110.02445 * 141.64597 * 14 13 11 41 41 H 0.97004 * 119.99911 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36850 * 217.03601 * 24 15 14 43 43 H 1.09001 * 110.45844 * 94.75993 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3297 7 8 3.5443 -2.9412 3.2189 8 7 2.6129 -1.4288 4.5529 9 6 3.1018 -2.1191 5.7490 10 6 2.6530 -1.3565 6.9972 11 6 3.1629 -2.0778 8.2464 12 1 2.8531 -3.1228 8.2455 13 6 2.6887 -1.3582 9.5366 14 6 3.7755 -1.7401 10.5642 15 7 4.9802 -2.1124 9.8080 16 6 6.1644 -2.5346 10.3508 17 1 6.9945 -2.7853 9.7070 18 6 6.2979 -2.6405 11.7285 19 7 5.2860 -2.3356 12.5129 20 14 7.9135 -3.2157 12.4689 21 1 8.9991 -2.2826 12.0740 22 1 7.7977 -3.2431 13.9491 23 1 8.2280 -4.5794 11.9720 24 6 4.7024 -1.9553 8.3688 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 2.0909 -0.6160 4.6413 33 1 2.6968 -3.1308 5.7757 34 1 4.1905 -2.1642 5.7231 35 1 3.0583 -0.3451 6.9703 36 1 1.5643 -1.3110 7.0233 37 1 2.6609 -0.2787 9.3881 38 1 1.7133 -1.7307 9.8496 39 1 3.4377 -2.5858 11.1632 40 1 3.9921 -0.8904 11.2117 41 1 5.3791 -2.4099 13.4756 42 1 5.1923 -2.7451 7.7994 43 1 5.0338 -0.9767 8.0215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481431347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:33 Heat of formation + Delta-G solvation = -4.309984 kcal Electronic energy + Delta-G solvation = -20453.911753 eV Core-core repulsion = 17306.513700 eV Total energy + Delta-G solvation = -3147.398053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84197 -39.39737 -37.33517 -36.54940 -34.79660 -33.21982 -32.27904 -30.69694 -28.33668 -28.04150 -26.74528 -25.07011 -23.47620 -22.47313 -21.82436 -21.08268 -19.64950 -18.86941 -17.31073 -17.05286 -16.91503 -16.65428 -16.29451 -15.68188 -15.51643 -15.19509 -15.14054 -14.37056 -14.12046 -13.85270 -13.68436 -13.36107 -13.10719 -13.06431 -12.98265 -12.79420 -12.66014 -12.42609 -12.33219 -12.26175 -12.05264 -11.83559 -11.77711 -11.40406 -11.37141 -11.34889 -11.31517 -11.17570 -10.70097 -10.23661 -8.88827 -7.85483 -5.20698 0.45765 1.23345 1.43729 1.47488 1.53750 2.00558 2.42406 2.49132 3.15229 3.32001 3.66006 3.78338 3.96957 4.04857 4.11727 4.15586 4.18653 4.33021 4.35357 4.48740 4.61221 4.69321 4.76014 4.81403 4.89664 4.94931 4.96151 4.99203 5.10381 5.13330 5.15817 5.24625 5.29236 5.34069 5.36600 5.44334 5.52944 5.71327 5.79831 6.17232 6.21121 6.35787 7.00859 7.11052 7.79221 8.43357 9.24619 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.002464 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.783327 B =11361.331573 C =11702.242294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.002 3.998 3 C -0.145 4.145 4 C -0.041 4.041 5 C -0.273 4.273 6 C 0.629 3.371 7 O -0.576 6.576 8 N -0.697 5.697 9 C 0.121 3.879 10 C -0.099 4.099 11 C -0.085 4.085 12 H 0.074 0.926 13 C -0.122 4.122 14 C 0.180 3.820 15 N -0.632 5.632 16 C -0.245 4.245 17 H 0.078 0.922 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.132 3.868 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.419 0.581 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.007 0.993 40 H 0.004 0.996 41 H 0.247 0.753 42 H 0.033 0.967 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 9.222 -24.541 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 C -0.202 4.202 4 C -0.044 4.044 5 C -0.276 4.276 6 C 0.416 3.584 7 O -0.457 6.457 8 N -0.348 5.348 9 C -0.002 4.002 10 C -0.137 4.137 11 C -0.105 4.105 12 H 0.092 0.908 13 C -0.160 4.160 14 C 0.055 3.945 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.096 0.904 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.007 3.993 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.257 0.743 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.025 0.975 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -13.039 8.472 -24.363 28.902 hybrid contribution 1.035 -0.322 1.165 1.591 sum -12.004 8.150 -23.199 27.362 Atomic orbital electron populations 1.21858 0.91368 1.02862 1.04035 1.18878 0.97290 0.95764 0.89626 1.21864 1.01405 0.92897 1.04035 1.23476 0.92367 0.93763 0.94760 1.20575 1.05867 1.03320 0.97813 1.14956 0.78813 0.82683 0.81911 1.90843 1.41368 1.26192 1.87293 1.45729 1.55036 1.29731 1.04331 1.21440 0.99248 0.96487 0.83044 1.21594 1.02674 0.99236 0.90165 1.22150 0.94259 0.99778 0.94327 0.90787 1.22768 0.98170 1.00477 0.94570 1.20965 0.85290 0.96158 0.92086 1.44844 1.10878 1.78165 1.01932 1.19433 0.90375 1.36840 0.90782 0.90371 1.25680 1.01366 1.02634 0.96517 1.70193 1.31455 1.55596 1.02806 0.85141 0.79008 0.78337 0.76789 1.20275 1.21813 1.20384 1.21849 0.95141 0.97655 0.84680 0.91996 0.88870 0.92534 0.86624 0.92002 0.92648 0.88859 0.74299 0.91544 0.92499 0.89944 0.88275 0.90479 0.89853 0.97480 0.97769 0.94409 0.94885 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.15 71.98 0.66 -0.23 16 2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16 3 C -0.14 -0.95 9.15 71.98 0.66 -0.29 16 4 C -0.04 -0.71 12.56 31.13 0.39 -0.32 16 5 C -0.27 -6.30 13.61 30.02 0.41 -5.89 16 6 C 0.63 17.43 7.65 85.49 0.65 18.08 16 7 O -0.58 -21.27 17.09 -4.08 -0.07 -21.33 16 8 N -0.70 -14.89 5.55 -470.74 -2.61 -17.50 16 9 C 0.12 2.93 5.55 86.38 0.48 3.41 16 10 C -0.10 -2.13 4.84 30.59 0.15 -1.98 16 11 C -0.09 -2.69 3.04 -9.40 -0.03 -2.72 16 12 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.12 -4.21 6.42 31.80 0.20 -4.00 16 14 C 0.18 9.06 5.38 86.74 0.47 9.53 16 15 N -0.63 -33.72 3.39 -691.88 -2.35 -36.07 16 16 C -0.25 -14.37 10.28 84.03 0.86 -13.50 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 19 N -0.95 -58.95 10.31 21.65 0.22 -58.72 16 20 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 C 0.13 5.44 6.04 86.86 0.52 5.96 16 25 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.42 6.05 8.44 -92.71 -0.78 5.27 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.63 7.59 -2.39 -0.02 1.61 16 35 H 0.08 1.65 8.04 -2.39 -0.02 1.64 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.01 0.39 7.38 -2.39 -0.02 0.38 16 40 H 0.00 0.23 7.50 -2.38 -0.02 0.21 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.03 1.38 8.10 -2.39 -0.02 1.36 16 43 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 Total: -1.00 -77.77 358.40 3.27 -74.50 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.20 Total: 5.38 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.85 Total: 4.40 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.74 Total: -112.29 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -77.77 3.27 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481431347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.188 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds