Wall clock time and date at job start Tue Mar 31 2020 00:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47526 * 239.99979 * 2 1 3 5 5 C 1.47199 * 109.46979 * 119.99865 * 2 1 3 6 6 C 2.64601 * 109.46736 * 119.99920 * 2 1 3 7 7 C 4.07802 * 109.46744 * 119.99915 * 2 1 3 8 8 O 1.21618 * 119.99713 * 346.24301 * 7 6 5 9 9 N 1.34768 * 120.00289 * 165.96465 * 7 6 5 10 10 C 1.47425 * 125.64496 * 355.05026 * 9 7 6 11 11 C 1.55132 * 104.72332 * 155.81323 * 10 9 7 12 12 C 1.55168 * 101.48519 * 37.29342 * 11 10 9 13 13 C 1.47023 * 125.64967 * 175.35309 * 9 7 6 14 14 H 1.08997 * 109.88363 * 300.44282 * 13 9 7 15 15 C 1.52998 * 109.88284 * 61.61205 * 13 9 7 16 16 N 1.46497 * 109.46977 * 185.24165 * 15 13 9 17 17 C 1.36938 * 119.99739 * 185.01201 * 16 15 13 18 18 H 1.08004 * 120.00237 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99975 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99994 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99825 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47022 * 89.99907 * 21 19 17 23 23 H 1.48495 * 109.47110 * 209.99790 * 21 19 17 24 24 H 1.48499 * 109.47081 * 329.99902 * 21 19 17 25 25 H 1.08994 * 109.47591 * 299.99837 * 1 2 3 26 26 H 1.09002 * 109.47016 * 60.00281 * 1 2 3 27 27 H 1.09005 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47632 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47387 * 300.00036 * 3 2 1 30 30 H 1.09002 * 109.47055 * 59.99635 * 3 2 1 31 31 H 1.08998 * 109.46894 * 300.00533 * 4 2 1 32 32 H 1.09002 * 109.47186 * 59.99844 * 4 2 1 33 33 H 1.08991 * 109.47317 * 180.02562 * 4 2 1 34 34 H 1.08998 * 110.36895 * 274.74134 * 10 9 7 35 35 H 1.09001 * 110.36982 * 37.07020 * 10 9 7 36 36 H 1.08997 * 111.19398 * 279.19455 * 11 10 9 37 37 H 1.08999 * 110.94501 * 155.28505 * 11 10 9 38 38 H 1.08999 * 110.71668 * 205.96880 * 12 11 10 39 39 H 1.09000 * 110.71769 * 82.69104 * 12 11 10 40 40 H 1.09011 * 109.46713 * 305.23646 * 15 13 9 41 41 H 1.08998 * 109.47348 * 65.23160 * 15 13 9 42 42 H 0.96993 * 120.00418 * 5.00970 * 16 15 13 43 43 H 0.96999 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4119 -1.2473 2.1605 7 6 2.8891 -1.9224 3.3298 8 8 2.1383 -2.6326 3.9709 9 7 4.1716 -1.7752 3.7166 10 6 5.2126 -1.0376 2.9778 11 6 6.2507 -0.6333 4.0573 12 6 6.2431 -1.8832 4.9768 13 6 4.7659 -2.3287 4.9422 14 1 4.2416 -1.9418 5.8159 15 6 4.6837 -3.8562 4.9164 16 7 5.1629 -4.3927 6.1926 17 6 5.2791 -5.7461 6.3660 18 1 5.0171 -6.4180 5.5620 19 6 5.7337 -6.2544 7.5751 20 7 5.8458 -7.5552 7.7416 21 14 6.1861 -5.0923 8.9658 22 1 4.9892 -4.8374 9.8071 23 1 7.2532 -5.7060 9.7963 24 1 6.6755 -3.8097 8.3997 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 5.6729 -1.6805 2.2276 35 1 4.7882 -0.1498 2.5091 36 1 5.9278 0.2541 4.6018 37 1 7.2346 -0.4806 3.6139 38 1 6.5423 -1.6178 5.9908 39 1 6.8903 -2.6622 4.5739 40 1 3.6491 -4.1617 4.7593 41 1 5.3028 -4.2398 4.1055 42 1 5.3978 -3.7893 6.9148 43 1 6.1638 -7.9104 8.5863 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482056140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:42 Heat of formation + Delta-G solvation = 22.901641 kcal Electronic energy + Delta-G solvation = -21384.482190 eV Core-core repulsion = 18238.264121 eV Total energy + Delta-G solvation = -3146.218068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11797 -37.89901 -37.40488 -34.68589 -32.66433 -31.49223 -31.29931 -29.15245 -27.72595 -27.69591 -25.46861 -24.54343 -22.34696 -21.87230 -20.95419 -19.81908 -18.07502 -17.23132 -16.67707 -16.13761 -15.27802 -14.80357 -14.67663 -14.42368 -14.40718 -13.93862 -13.61735 -13.16897 -12.98938 -12.85992 -12.81848 -12.68605 -12.42103 -12.11271 -12.09968 -11.74070 -11.68031 -11.59647 -11.33593 -11.15553 -10.90187 -10.69782 -10.55504 -10.48597 -10.41026 -10.14058 -10.01375 -9.54057 -8.82083 -8.58757 -7.16560 -5.70674 -3.06022 1.55872 2.18087 2.91526 3.39741 3.44193 3.48687 3.52987 3.82886 4.49310 4.50584 4.51089 4.53045 4.64138 4.72165 4.90588 5.12731 5.18212 5.20740 5.26262 5.33160 5.33811 5.43119 5.44013 5.47610 5.57289 5.61475 5.64582 5.68255 5.74968 5.82320 5.85040 5.86724 5.93048 6.01449 6.26922 6.38600 6.72259 6.94670 7.12701 7.48709 8.04641 8.15805 8.47766 9.26623 9.98534 10.18631 11.47993 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.003508 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.615309 B = 7979.345603 C = 8471.996115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.083 4.083 6 C -0.205 4.205 7 C 0.641 3.359 8 O -0.509 6.509 9 N -0.602 5.602 10 C 0.101 3.899 11 C -0.133 4.133 12 C -0.124 4.124 13 C 0.129 3.871 14 H 0.078 0.922 15 C 0.148 3.852 16 N -0.751 5.751 17 C -0.239 4.239 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.031 0.969 42 H 0.360 0.640 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 22.333 -17.989 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.085 4.085 6 C -0.208 4.208 7 C 0.429 3.571 8 O -0.385 6.385 9 N -0.336 5.336 10 C -0.022 4.022 11 C -0.171 4.171 12 C -0.162 4.162 13 C 0.026 3.974 14 H 0.096 0.904 15 C 0.020 3.980 16 N -0.398 5.398 17 C -0.369 4.369 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.192 0.808 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.247 21.681 -17.698 28.308 hybrid contribution 0.374 0.646 1.109 1.337 sum -3.874 22.327 -16.589 28.084 Atomic orbital electron populations 1.21917 0.92373 1.03042 1.02674 1.17907 0.96019 0.94266 0.87947 1.21896 1.01699 0.93429 1.02750 1.21899 1.01756 1.00791 0.95411 1.22426 0.97873 0.94818 0.93395 1.20712 1.02177 1.01530 0.96354 1.14288 0.80786 0.80470 0.81527 1.90921 1.55455 1.37569 1.54530 1.48269 1.08087 1.53086 1.24186 1.22388 0.88750 0.95938 0.95122 1.22835 0.98956 0.98505 0.96845 1.22729 0.95176 0.97370 1.00910 1.21911 0.93359 0.95982 0.86133 0.90354 1.20986 0.98851 0.88782 0.89411 1.42540 1.80928 1.04734 1.11559 1.19049 1.36789 0.81400 0.99618 0.89249 1.24656 1.01620 0.95498 0.97475 1.69702 1.53154 1.10207 1.25336 0.86531 0.78130 0.80555 0.83230 1.21072 1.21768 1.20337 0.91937 0.91250 0.91787 0.91925 0.91184 0.91996 0.91827 0.91171 0.91891 0.90961 0.90815 0.90684 0.89729 0.89898 0.89457 0.93807 0.95149 0.80766 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.43 37.16 0.31 -0.68 16 2 C 0.04 0.30 0.95 -157.30 -0.15 0.15 16 3 C -0.14 -0.83 8.43 37.16 0.31 -0.52 16 4 C -0.14 -0.92 8.43 37.16 0.31 -0.60 16 5 C -0.08 -0.96 11.77 -37.12 -0.44 -1.39 16 6 C -0.20 -2.95 12.46 -38.84 -0.48 -3.43 16 7 C 0.64 11.11 7.51 -14.34 -0.11 11.00 16 8 O -0.51 -10.97 15.87 5.26 0.08 -10.89 16 9 N -0.60 -9.20 3.06 -165.72 -0.51 -9.71 16 10 C 0.10 1.11 6.72 -2.41 -0.02 1.09 16 11 C -0.13 -1.32 7.10 -24.46 -0.17 -1.49 16 12 C -0.12 -1.69 6.23 -24.89 -0.16 -1.85 16 13 C 0.13 2.19 2.94 -66.95 -0.20 1.99 16 14 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 15 C 0.15 3.19 5.66 -4.04 -0.02 3.17 16 16 N -0.75 -18.83 5.22 -59.90 -0.31 -19.15 16 17 C -0.24 -7.09 10.47 -15.06 -0.16 -7.24 16 18 H 0.09 2.86 8.06 -52.48 -0.42 2.44 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -30.27 13.97 55.49 0.78 -29.49 16 21 Si 0.89 22.59 27.74 -169.99 -4.71 17.88 16 22 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.69 7.61 -51.93 -0.40 0.29 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.27 7.76 -51.93 -0.40 0.87 16 40 H 0.04 1.07 6.55 -51.92 -0.34 0.73 16 41 H 0.03 0.66 8.02 -51.93 -0.42 0.25 16 42 H 0.36 8.61 5.48 -40.82 -0.22 8.38 16 43 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -35.49 354.96 -7.67 -43.16 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.29 Total: 2.67 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.06 Total: 0.19 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.05 Total: -58.35 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.49 -7.67 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482056140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.059 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds