Wall clock time and date at job start Tue Mar 31 2020 00:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47526 * 239.99979 * 2 1 3 5 5 C 1.47199 * 109.46979 * 119.99865 * 2 1 3 6 6 C 2.64601 * 109.46736 * 119.99920 * 2 1 3 7 7 C 4.07802 * 109.46744 * 119.99915 * 2 1 3 8 8 O 1.21618 * 119.99713 * 346.24301 * 7 6 5 9 9 N 1.34768 * 120.00289 * 165.96465 * 7 6 5 10 10 C 1.47425 * 125.64496 * 355.05026 * 9 7 6 11 11 C 1.55132 * 104.72332 * 155.81323 * 10 9 7 12 12 C 1.55168 * 101.48519 * 37.29342 * 11 10 9 13 13 C 1.47023 * 125.64967 * 175.35309 * 9 7 6 14 14 H 1.08997 * 109.88363 * 300.44282 * 13 9 7 15 15 C 1.52998 * 109.88284 * 61.61205 * 13 9 7 16 16 N 1.46497 * 109.46977 * 185.24165 * 15 13 9 17 17 C 1.36938 * 119.99739 * 185.01201 * 16 15 13 18 18 H 1.08004 * 120.00237 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99975 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99994 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99825 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47022 * 89.99907 * 21 19 17 23 23 H 1.48495 * 109.47110 * 209.99790 * 21 19 17 24 24 H 1.48499 * 109.47081 * 329.99902 * 21 19 17 25 25 H 1.08994 * 109.47591 * 299.99837 * 1 2 3 26 26 H 1.09002 * 109.47016 * 60.00281 * 1 2 3 27 27 H 1.09005 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47632 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47387 * 300.00036 * 3 2 1 30 30 H 1.09002 * 109.47055 * 59.99635 * 3 2 1 31 31 H 1.08998 * 109.46894 * 300.00533 * 4 2 1 32 32 H 1.09002 * 109.47186 * 59.99844 * 4 2 1 33 33 H 1.08991 * 109.47317 * 180.02562 * 4 2 1 34 34 H 1.08998 * 110.36895 * 274.74134 * 10 9 7 35 35 H 1.09001 * 110.36982 * 37.07020 * 10 9 7 36 36 H 1.08997 * 111.19398 * 279.19455 * 11 10 9 37 37 H 1.08999 * 110.94501 * 155.28505 * 11 10 9 38 38 H 1.08999 * 110.71668 * 205.96880 * 12 11 10 39 39 H 1.09000 * 110.71769 * 82.69104 * 12 11 10 40 40 H 1.09011 * 109.46713 * 305.23646 * 15 13 9 41 41 H 1.08998 * 109.47348 * 65.23160 * 15 13 9 42 42 H 0.96993 * 120.00418 * 5.00970 * 16 15 13 43 43 H 0.96999 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4119 -1.2473 2.1605 7 6 2.8891 -1.9224 3.3298 8 8 2.1383 -2.6326 3.9709 9 7 4.1716 -1.7752 3.7166 10 6 5.2126 -1.0376 2.9778 11 6 6.2507 -0.6333 4.0573 12 6 6.2431 -1.8832 4.9768 13 6 4.7659 -2.3287 4.9422 14 1 4.2416 -1.9418 5.8159 15 6 4.6837 -3.8562 4.9164 16 7 5.1629 -4.3927 6.1926 17 6 5.2791 -5.7461 6.3660 18 1 5.0171 -6.4180 5.5620 19 6 5.7337 -6.2544 7.5751 20 7 5.8458 -7.5552 7.7416 21 14 6.1861 -5.0923 8.9658 22 1 4.9892 -4.8374 9.8071 23 1 7.2532 -5.7060 9.7963 24 1 6.6755 -3.8097 8.3997 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 5.6729 -1.6805 2.2276 35 1 4.7882 -0.1498 2.5091 36 1 5.9278 0.2541 4.6018 37 1 7.2346 -0.4806 3.6139 38 1 6.5423 -1.6178 5.9908 39 1 6.8903 -2.6622 4.5739 40 1 3.6491 -4.1617 4.7593 41 1 5.3028 -4.2398 4.1055 42 1 5.3978 -3.7893 6.9148 43 1 6.1638 -7.9104 8.5863 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482056140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:41 Heat of formation + Delta-G solvation = -0.725774 kcal Electronic energy + Delta-G solvation = -21385.506751 eV Core-core repulsion = 18238.264121 eV Total energy + Delta-G solvation = -3147.242630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39148 -38.85073 -38.44332 -36.63228 -33.99890 -33.40606 -32.35504 -30.75184 -28.21502 -28.17974 -26.93295 -25.97794 -23.96175 -23.14601 -21.99177 -21.06875 -19.86236 -18.73262 -17.93762 -17.03367 -16.51395 -16.51250 -15.88347 -15.48913 -15.29639 -15.21319 -15.15068 -14.85014 -14.27173 -14.17581 -13.82183 -13.36539 -13.34375 -13.22550 -13.11725 -12.86435 -12.71670 -12.61441 -12.33352 -12.26526 -12.15157 -12.14511 -11.96816 -11.84064 -11.67717 -11.57358 -11.33419 -11.22201 -11.00116 -9.88111 -9.38219 -8.06991 -5.43151 0.41421 1.14531 1.34596 1.41581 1.48215 1.77457 2.36955 2.45928 2.89061 3.23399 3.50206 3.54886 3.69019 3.90482 3.94956 3.96351 3.97399 4.17044 4.22426 4.28889 4.41950 4.63327 4.73616 4.75706 4.77826 4.82987 4.84434 4.96403 4.96949 4.97427 5.03678 5.06738 5.08855 5.19830 5.28408 5.33752 5.35294 5.38203 5.67598 6.12655 6.14940 6.27754 6.84889 7.01045 7.72414 7.97262 9.14755 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.003508 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.615309 B = 7979.345603 C = 8471.996115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.032 3.968 3 C -0.138 4.138 4 C -0.141 4.141 5 C -0.035 4.035 6 C -0.262 4.262 7 C 0.636 3.364 8 O -0.571 6.571 9 N -0.600 5.600 10 C 0.094 3.906 11 C -0.115 4.115 12 C -0.122 4.122 13 C 0.132 3.868 14 H 0.070 0.930 15 C 0.152 3.848 16 N -0.747 5.747 17 C -0.243 4.243 18 H 0.046 0.954 19 C -0.062 4.062 20 N -0.984 5.984 21 Si 0.961 3.039 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.239 1.239 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.007 0.993 41 H 0.026 0.974 42 H 0.370 0.630 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 26.604 -19.278 32.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 C -0.195 4.195 4 C -0.198 4.198 5 C -0.038 4.038 6 C -0.265 4.265 7 C 0.426 3.574 8 O -0.452 6.452 9 N -0.332 5.332 10 C -0.027 4.027 11 C -0.153 4.153 12 C -0.160 4.160 13 C 0.029 3.971 14 H 0.088 0.912 15 C 0.024 3.976 16 N -0.394 5.394 17 C -0.374 4.374 18 H 0.064 0.936 19 C -0.254 4.254 20 N -0.634 5.634 21 Si 0.787 3.213 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.163 1.163 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.044 0.956 42 H 0.203 0.797 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.005 26.016 -19.038 32.378 hybrid contribution -0.091 -0.743 1.342 1.536 sum -3.095 25.273 -17.697 31.007 Atomic orbital electron populations 1.21961 0.91617 1.02641 1.03889 1.18334 0.96600 0.95367 0.86523 1.21916 1.02019 0.91668 1.03871 1.21931 1.01930 1.00276 0.95619 1.23375 0.95156 0.92453 0.92775 1.20310 1.04992 1.03978 0.97195 1.14703 0.81003 0.79788 0.81859 1.90871 1.57166 1.40417 1.56748 1.48381 1.08298 1.52537 1.23936 1.22731 0.87969 0.96485 0.95507 1.22850 1.00151 0.96870 0.95390 1.22713 0.91723 0.98973 1.02573 1.21768 0.96196 0.92223 0.86940 0.91189 1.20955 0.96200 0.92621 0.87792 1.42392 1.80792 1.03094 1.13077 1.18956 1.36601 0.83063 0.98780 0.93587 1.25601 1.01667 0.97517 1.00584 1.69900 1.54332 1.12807 1.26339 0.85326 0.77790 0.79452 0.78761 1.20783 1.21479 1.16335 0.92529 0.88291 0.93056 0.91488 0.88585 0.92434 0.93084 0.88369 0.91694 0.90194 0.88506 0.89129 0.86508 0.88883 0.90468 0.97489 0.95643 0.79657 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.43 71.98 0.61 -1.07 16 2 C 0.03 0.41 0.95 -53.99 -0.05 0.36 16 3 C -0.14 -1.13 8.43 71.98 0.61 -0.52 16 4 C -0.14 -1.42 8.43 71.98 0.61 -0.82 16 5 C -0.04 -0.78 11.77 31.12 0.37 -0.41 16 6 C -0.26 -7.64 12.46 30.02 0.37 -7.27 16 7 C 0.64 23.12 7.51 85.49 0.64 23.76 16 8 O -0.57 -26.62 15.87 -4.09 -0.06 -26.68 16 9 N -0.60 -18.39 3.06 -796.49 -2.44 -20.83 16 10 C 0.09 1.84 6.72 86.93 0.58 2.43 16 11 C -0.12 -1.83 7.10 32.07 0.23 -1.60 16 12 C -0.12 -3.05 6.23 31.79 0.20 -2.86 16 13 C 0.13 4.50 2.94 45.34 0.13 4.64 16 14 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 15 C 0.15 6.89 5.66 86.38 0.49 7.38 16 16 N -0.75 -38.22 5.22 -343.44 -1.79 -40.01 16 17 C -0.24 -15.04 10.47 84.03 0.88 -14.16 16 18 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 19 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.98 -65.65 13.97 21.65 0.30 -65.35 16 21 Si 0.96 46.52 27.74 68.60 1.90 48.42 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.24 -10.03 6.52 99.48 0.65 -9.38 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.49 7.61 -2.39 -0.02 1.48 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.11 7.76 -2.39 -0.02 2.10 16 40 H 0.01 0.38 6.55 -2.38 -0.02 0.36 16 41 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 42 H 0.37 17.34 5.48 -92.71 -0.51 16.84 16 43 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -83.52 354.96 4.45 -79.07 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.42 Total: 18.90 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.13 Total: 6.48 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -3.93 Total: -126.18 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -83.52 4.45 -79.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482056140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.340 kcal (2) G-P(sol) polarization free energy of solvation -83.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds