Wall clock time and date at job start Tue Mar 31 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 29.36153 * 3 2 1 5 5 C 1.53000 * 109.46973 * 273.54516 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 6 11 11 C 1.53000 * 110.63929 * 59.30029 * 10 9 7 12 12 C 1.55154 * 110.71874 * 182.43805 * 10 9 7 13 13 C 1.54911 * 101.57799 * 82.86471 * 12 10 9 14 14 N 1.47424 * 104.83477 * 37.00658 * 13 12 10 15 15 C 1.36931 * 125.64874 * 155.91105 * 14 13 12 16 16 H 1.08000 * 120.00031 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00322 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99609 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47417 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46769 * 120.00677 * 19 17 15 22 22 H 1.48509 * 109.47022 * 240.00041 * 19 17 15 23 23 C 1.47490 * 108.75722 * 335.89446 * 14 13 12 24 24 H 1.08992 * 109.47494 * 357.09583 * 1 2 3 25 25 H 1.09001 * 109.46765 * 117.09551 * 1 2 3 26 26 H 1.08996 * 109.46684 * 237.09365 * 1 2 3 27 27 H 1.09002 * 109.47120 * 153.54271 * 4 3 2 28 28 H 1.09001 * 109.46952 * 33.54408 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99745 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99917 * 5 4 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 32 32 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 33 33 H 0.97003 * 119.99640 * 359.97438 * 9 7 6 34 34 H 1.09008 * 109.47373 * 60.70079 * 11 10 9 35 35 H 1.08998 * 109.47115 * 180.69857 * 11 10 9 36 36 H 1.09005 * 109.47461 * 300.70358 * 11 10 9 37 37 H 1.09004 * 111.00510 * 200.93820 * 12 10 9 38 38 H 1.08994 * 111.00555 * 324.78991 * 12 10 9 39 39 H 1.09000 * 110.36449 * 155.84959 * 13 12 10 40 40 H 1.09005 * 110.36793 * 278.16812 * 13 12 10 41 41 H 0.96997 * 120.00077 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.02682 * 241.66217 * 23 14 13 43 43 H 1.09005 * 109.96231 * 120.34753 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0003 5 6 4.6283 -0.0886 1.4393 6 6 6.1583 -0.0878 1.4390 7 6 6.6610 -0.1750 2.8570 8 8 5.8731 -0.2317 3.7773 9 7 7.9862 -0.1901 3.1025 10 6 8.4748 -0.2743 4.4811 11 6 7.9655 -1.5489 5.1569 12 6 10.0248 -0.2148 4.5187 13 6 10.2790 1.3119 4.4513 14 7 9.1964 1.9106 5.2531 15 6 9.2405 3.1340 5.8664 16 1 8.3909 3.4848 6.4335 17 6 10.3773 3.9236 5.7594 18 7 11.4125 3.4964 5.0679 19 14 10.4371 5.5929 6.5955 20 1 9.1553 5.8379 7.3041 21 1 11.5550 5.6172 7.5728 22 1 10.6490 6.6505 5.5747 23 6 8.0571 0.9745 5.2857 24 1 -0.3634 1.0262 0.0521 25 1 -0.3633 -0.4681 -0.9149 26 1 -0.3632 -0.5583 0.8628 27 1 4.4812 0.9207 -0.4583 28 1 4.4813 -0.8559 -0.5683 29 1 4.2651 0.7680 2.0073 30 1 4.2652 -1.0085 1.8972 31 1 6.5220 -0.9441 0.8710 32 1 6.5212 0.8324 0.9812 33 1 8.6163 -0.1451 2.3664 34 1 8.3287 -2.4197 4.6109 35 1 8.3295 -1.5861 6.1836 36 1 6.8755 -1.5493 5.1575 37 1 10.4095 -0.6343 5.4483 38 1 10.4562 -0.7212 3.6553 39 1 11.2499 1.5541 4.8836 40 1 10.2245 1.6604 3.4199 41 1 12.2066 4.0482 4.9928 42 1 7.1821 1.4354 4.8272 43 1 7.8346 0.6948 6.3155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484058839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:11 Heat of formation + Delta-G solvation = 19.352595 kcal Electronic energy + Delta-G solvation = -21471.267448 eV Core-core repulsion = 18324.895481 eV Total energy + Delta-G solvation = -3146.371967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89225 -37.46003 -35.70270 -33.95242 -33.36743 -31.88345 -30.24274 -29.33023 -28.62296 -26.58612 -25.64211 -23.69527 -22.45301 -20.49190 -20.10278 -18.95312 -17.37571 -16.77873 -16.16503 -15.90431 -15.51227 -14.67550 -14.48090 -14.15882 -13.96424 -13.78191 -13.61877 -13.39155 -13.25021 -12.81685 -12.53026 -12.37096 -12.17245 -11.83007 -11.71022 -11.55809 -11.52794 -10.95942 -10.90365 -10.85564 -10.37347 -10.32609 -10.04190 -9.91577 -9.87336 -9.80931 -9.63499 -9.18276 -8.64119 -8.56713 -6.79459 -5.63676 -3.03686 2.57195 2.61073 2.98306 3.41120 3.47093 3.49648 3.51665 4.11867 4.51311 4.81895 4.93348 4.97995 5.16560 5.27738 5.31237 5.39696 5.42315 5.44234 5.46232 5.50872 5.56386 5.58300 5.60927 5.76290 5.83329 6.07045 6.07979 6.19223 6.24093 6.26180 6.39513 6.48383 6.54790 6.74118 6.85934 7.19030 7.46735 7.54758 7.65408 7.82784 7.92851 8.36757 8.60927 9.25071 9.85371 10.50677 11.40798 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.003504 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.592989 B = 7988.473824 C = 8822.450938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.203 4.203 3 C -0.181 4.181 4 C -0.008 4.008 5 C -0.097 4.097 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.540 6.540 9 N -0.710 5.710 10 C 0.159 3.841 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.605 5.605 15 C -0.215 4.215 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.136 3.864 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.010 0.990 41 H 0.250 0.750 42 H 0.033 0.967 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -10.734 -10.969 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.203 4.203 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.135 4.135 6 C -0.182 4.182 7 C 0.299 3.701 8 O -0.417 6.417 9 N -0.361 5.361 10 C 0.073 3.927 11 C -0.209 4.209 12 C -0.186 4.186 13 C 0.029 3.971 14 N -0.331 5.331 15 C -0.344 4.344 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.010 3.990 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.231 0.769 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.721 -10.586 -10.253 18.830 hybrid contribution 0.409 0.975 -0.066 1.059 sum -11.312 -9.612 -10.318 18.078 Atomic orbital electron populations 1.18822 0.84822 1.02940 1.02822 1.22402 0.93977 1.02204 1.01671 1.22373 0.93693 1.00914 1.01079 1.18734 0.84382 1.03161 0.98150 1.21255 0.93146 1.04267 0.94862 1.21680 0.97185 1.04383 0.94939 1.20505 0.82405 0.75989 0.91214 1.90663 1.55399 1.49428 1.46231 1.46024 1.06692 1.74507 1.08841 1.21323 0.94833 0.95462 0.81092 1.22047 1.03020 0.95731 1.00056 1.23351 0.92243 1.01661 1.01309 1.21923 0.95942 0.85077 0.94205 1.44634 1.11933 1.16944 1.59618 1.19154 0.99636 0.91555 1.24044 0.90527 1.24763 0.96431 0.98989 1.00745 1.69788 1.05292 1.36923 1.45471 0.85994 0.77360 0.83571 0.78608 1.20544 1.21776 1.21833 1.21689 0.91695 0.89132 0.96484 0.90332 0.90448 0.90269 0.89520 0.89669 0.90698 0.90897 0.89044 0.88741 0.76901 0.93275 0.91909 0.90833 0.90637 0.91941 0.87491 0.97212 0.93888 0.94891 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.28 10.32 34.37 0.35 0.07 16 2 C -0.20 -2.31 14.13 -37.12 -0.52 -2.83 16 3 C -0.18 -2.14 13.34 -37.12 -0.50 -2.64 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 5 C -0.10 -1.11 4.46 -26.73 -0.12 -1.23 16 6 C -0.14 -1.53 5.70 -27.88 -0.16 -1.69 16 7 C 0.51 7.93 7.04 -10.99 -0.08 7.85 16 8 O -0.54 -10.27 12.93 5.55 0.07 -10.20 16 9 N -0.71 -10.98 5.15 -45.91 -0.24 -11.22 16 10 C 0.16 2.86 0.80 -129.99 -0.10 2.75 16 11 C -0.15 -2.41 8.41 37.16 0.31 -2.10 16 12 C -0.15 -2.67 6.08 -24.58 -0.15 -2.82 16 13 C 0.15 3.64 5.87 -2.53 -0.01 3.63 16 14 N -0.61 -15.83 3.41 -169.70 -0.58 -16.41 16 15 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 18 N -0.93 -26.96 10.09 55.49 0.56 -26.40 16 19 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C 0.14 3.09 6.19 -2.81 -0.02 3.08 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 5.18 8.48 -40.82 -0.35 4.83 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.07 1.28 6.20 -51.93 -0.32 0.96 16 37 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 38 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 39 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.81 6.68 -51.93 -0.35 0.46 16 43 H 0.03 0.69 7.80 -51.93 -0.41 0.28 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -33.58 351.14 -8.50 -42.08 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.17 Total: 2.43 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.41 Total: -3.00 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.25 Total: -54.03 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.58 -8.50 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484058839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.435 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds