Wall clock time and date at job start Tue Mar 31 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 29.36153 * 3 2 1 5 5 C 1.53000 * 109.46973 * 273.54516 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 6 11 11 C 1.53000 * 110.63929 * 59.30029 * 10 9 7 12 12 C 1.55154 * 110.71874 * 182.43805 * 10 9 7 13 13 C 1.54911 * 101.57799 * 82.86471 * 12 10 9 14 14 N 1.47424 * 104.83477 * 37.00658 * 13 12 10 15 15 C 1.36931 * 125.64874 * 155.91105 * 14 13 12 16 16 H 1.08000 * 120.00031 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00322 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99609 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47417 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46769 * 120.00677 * 19 17 15 22 22 H 1.48509 * 109.47022 * 240.00041 * 19 17 15 23 23 C 1.47490 * 108.75722 * 335.89446 * 14 13 12 24 24 H 1.08992 * 109.47494 * 357.09583 * 1 2 3 25 25 H 1.09001 * 109.46765 * 117.09551 * 1 2 3 26 26 H 1.08996 * 109.46684 * 237.09365 * 1 2 3 27 27 H 1.09002 * 109.47120 * 153.54271 * 4 3 2 28 28 H 1.09001 * 109.46952 * 33.54408 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99745 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99917 * 5 4 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 32 32 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 33 33 H 0.97003 * 119.99640 * 359.97438 * 9 7 6 34 34 H 1.09008 * 109.47373 * 60.70079 * 11 10 9 35 35 H 1.08998 * 109.47115 * 180.69857 * 11 10 9 36 36 H 1.09005 * 109.47461 * 300.70358 * 11 10 9 37 37 H 1.09004 * 111.00510 * 200.93820 * 12 10 9 38 38 H 1.08994 * 111.00555 * 324.78991 * 12 10 9 39 39 H 1.09000 * 110.36449 * 155.84959 * 13 12 10 40 40 H 1.09005 * 110.36793 * 278.16812 * 13 12 10 41 41 H 0.96997 * 120.00077 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.02682 * 241.66217 * 23 14 13 43 43 H 1.09005 * 109.96231 * 120.34753 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0003 5 6 4.6283 -0.0886 1.4393 6 6 6.1583 -0.0878 1.4390 7 6 6.6610 -0.1750 2.8570 8 8 5.8731 -0.2317 3.7773 9 7 7.9862 -0.1901 3.1025 10 6 8.4748 -0.2743 4.4811 11 6 7.9655 -1.5489 5.1569 12 6 10.0248 -0.2148 4.5187 13 6 10.2790 1.3119 4.4513 14 7 9.1964 1.9106 5.2531 15 6 9.2405 3.1340 5.8664 16 1 8.3909 3.4848 6.4335 17 6 10.3773 3.9236 5.7594 18 7 11.4125 3.4964 5.0679 19 14 10.4371 5.5929 6.5955 20 1 9.1553 5.8379 7.3041 21 1 11.5550 5.6172 7.5728 22 1 10.6490 6.6505 5.5747 23 6 8.0571 0.9745 5.2857 24 1 -0.3634 1.0262 0.0521 25 1 -0.3633 -0.4681 -0.9149 26 1 -0.3632 -0.5583 0.8628 27 1 4.4812 0.9207 -0.4583 28 1 4.4813 -0.8559 -0.5683 29 1 4.2651 0.7680 2.0073 30 1 4.2652 -1.0085 1.8972 31 1 6.5220 -0.9441 0.8710 32 1 6.5212 0.8324 0.9812 33 1 8.6163 -0.1451 2.3664 34 1 8.3287 -2.4197 4.6109 35 1 8.3295 -1.5861 6.1836 36 1 6.8755 -1.5493 5.1575 37 1 10.4095 -0.6343 5.4483 38 1 10.4562 -0.7212 3.6553 39 1 11.2499 1.5541 4.8836 40 1 10.2245 1.6604 3.4199 41 1 12.2066 4.0482 4.9928 42 1 7.1821 1.4354 4.8272 43 1 7.8346 0.6948 6.3155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484058839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:11 Heat of formation + Delta-G solvation = -1.682413 kcal Electronic energy + Delta-G solvation = -21472.179594 eV Core-core repulsion = 18324.895481 eV Total energy + Delta-G solvation = -3147.284113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24301 -38.99151 -36.61711 -35.67737 -34.23112 -33.56820 -31.80169 -30.50498 -30.08011 -27.56315 -27.38097 -25.41813 -23.52163 -22.24403 -21.39581 -20.39931 -19.00372 -18.20735 -17.21567 -17.01262 -16.86040 -16.69567 -15.69486 -15.44489 -15.31943 -14.79267 -14.65451 -14.47664 -14.20633 -14.20071 -14.04351 -13.66104 -13.37680 -13.30224 -13.19335 -12.97494 -12.81787 -12.77472 -12.45374 -12.07723 -12.02986 -11.94941 -11.83359 -11.67921 -11.51400 -10.76668 -10.71562 -10.57363 -10.50556 -9.94995 -8.89691 -7.80004 -5.23273 1.44433 1.44881 1.55699 1.71707 1.77595 1.79047 2.33039 2.47432 3.29212 3.39146 3.61494 3.70196 3.87664 4.03425 4.09779 4.14042 4.19532 4.50325 4.63437 4.66215 4.67561 4.71427 4.76111 4.81644 4.83284 4.84998 4.86629 4.90115 4.94787 5.02067 5.10706 5.15222 5.21811 5.33523 5.35475 5.41643 5.62340 5.73934 5.81324 6.30267 6.72459 6.73477 7.10475 7.42012 7.75759 8.39640 9.21487 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.003504 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.592989 B = 7988.473824 C = 8822.450938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.219 4.219 3 C -0.216 4.216 4 C -0.002 4.002 5 C -0.090 4.090 6 C -0.130 4.130 7 C 0.505 3.495 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.624 5.624 15 C -0.242 4.242 16 H 0.068 0.932 17 C -0.061 4.061 18 N -0.944 5.944 19 Si 0.978 3.022 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.289 1.289 23 C 0.135 3.865 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.412 0.588 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.075 0.925 40 H -0.005 1.005 41 H 0.249 0.751 42 H 0.008 0.992 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -11.863 -12.501 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.219 4.219 3 C -0.216 4.216 4 C -0.038 4.038 5 C -0.129 4.129 6 C -0.169 4.169 7 C 0.293 3.707 8 O -0.462 6.462 9 N -0.358 5.358 10 C 0.082 3.918 11 C -0.199 4.199 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.351 5.351 15 C -0.371 4.371 16 H 0.086 0.914 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.807 3.193 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.216 1.216 23 C 0.009 3.991 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.248 0.752 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -11.615 -11.734 -11.814 20.302 hybrid contribution 0.319 1.359 0.429 1.461 sum -11.296 -10.375 -11.385 19.101 Atomic orbital electron populations 1.19053 0.82643 1.04010 1.04151 1.23429 0.95482 1.01921 1.01086 1.23115 0.94959 1.01583 1.01908 1.18785 0.83229 1.04955 0.96859 1.21135 0.93767 1.02128 0.95836 1.21695 0.96294 1.06929 0.92010 1.21374 0.81897 0.74625 0.92802 1.90653 1.56350 1.51126 1.48025 1.45962 1.07275 1.74350 1.08163 1.21104 0.94606 0.93936 0.82118 1.21957 1.01948 0.95538 1.00456 1.23198 0.92401 0.97541 1.03447 1.21756 0.93826 0.88823 0.92512 1.44917 1.13653 1.16892 1.59600 1.19399 0.99734 0.93198 1.24742 0.91440 1.25549 0.96071 1.02322 1.01478 1.70016 1.05444 1.37812 1.46057 0.85014 0.77460 0.79284 0.77581 1.19911 1.21309 1.21570 1.21767 0.90041 0.90645 0.96617 0.89266 0.88583 0.89373 0.88187 0.87110 0.93837 0.92312 0.85017 0.87113 0.75164 0.90257 0.91730 0.92399 0.90178 0.87860 0.90704 0.98670 0.94132 0.97426 0.96427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.58 10.32 70.18 0.72 0.14 16 2 C -0.22 -4.88 14.13 31.13 0.44 -4.44 16 3 C -0.22 -4.99 13.34 31.13 0.42 -4.58 16 4 C 0.00 -0.04 5.70 28.79 0.16 0.13 16 5 C -0.09 -2.00 4.46 30.59 0.14 -1.87 16 6 C -0.13 -2.49 5.70 29.85 0.17 -2.32 16 7 C 0.50 15.05 7.04 87.66 0.62 15.66 16 8 O -0.58 -22.41 12.93 -3.05 -0.04 -22.45 16 9 N -0.71 -20.52 5.15 -417.56 -2.15 -22.67 16 10 C 0.17 5.88 0.80 4.79 0.00 5.89 16 11 C -0.14 -4.25 8.41 71.98 0.61 -3.65 16 12 C -0.13 -4.38 6.08 31.99 0.19 -4.18 16 13 C 0.16 7.41 5.87 86.86 0.51 7.92 16 14 N -0.62 -33.42 3.41 -690.79 -2.35 -35.77 16 15 C -0.24 -14.21 10.28 84.04 0.86 -13.34 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 17 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 18 N -0.94 -55.74 10.09 21.65 0.22 -55.52 16 19 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 C 0.14 6.28 6.19 86.64 0.54 6.82 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 9.51 8.48 -92.71 -0.79 8.73 16 34 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 35 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.06 1.97 6.20 -2.38 -0.01 1.95 16 37 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 38 H 0.10 2.74 8.05 -2.39 -0.02 2.72 16 39 H 0.08 4.08 5.88 -2.39 -0.01 4.07 16 40 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.01 0.39 6.68 -2.39 -0.02 0.38 16 43 H 0.02 0.85 7.80 -2.38 -0.02 0.83 16 Total: -1.00 -76.09 351.14 3.76 -72.33 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.21 Total: 16.30 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.85 Total: -0.89 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.28 Total: -113.96 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.09 3.76 -72.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484058839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.647 kcal (2) G-P(sol) polarization free energy of solvation -76.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds