Wall clock time and date at job start Tue Mar 31 2020 00:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47207 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 134.19598 * 3 2 1 5 5 C 1.53005 * 109.46894 * 116.94405 * 4 3 2 6 6 C 1.52997 * 109.47340 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47315 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99771 * 359.97438 * 7 6 5 9 9 N 1.34768 * 119.99897 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00137 * 179.97438 * 9 7 6 11 11 C 1.52997 * 110.88668 * 297.57715 * 10 9 7 12 12 C 1.55157 * 111.00716 * 173.64774 * 10 9 7 13 13 C 1.54334 * 103.02095 * 277.23316 * 12 10 9 14 14 N 1.47014 * 107.26782 * 338.14225 * 13 12 10 15 15 C 1.36945 * 125.64902 * 178.84833 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68982 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68887 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47428 * 108.70537 * 358.58102 * 14 13 12 24 24 H 1.09001 * 109.47002 * 288.85947 * 1 2 3 25 25 H 1.08993 * 109.46870 * 48.86035 * 1 2 3 26 26 H 1.09003 * 109.46741 * 168.85882 * 1 2 3 27 27 H 1.08993 * 109.47074 * 356.94474 * 4 3 2 28 28 H 1.09000 * 109.47145 * 236.93934 * 4 3 2 29 29 H 1.09001 * 109.47063 * 59.99509 * 5 4 3 30 30 H 1.08996 * 109.46882 * 300.00237 * 5 4 3 31 31 H 1.08992 * 109.47212 * 59.99647 * 6 5 4 32 32 H 1.09003 * 109.46740 * 300.00173 * 6 5 4 33 33 H 0.97003 * 120.00743 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.46863 * 182.42381 * 11 10 9 35 35 H 1.09006 * 109.46671 * 302.41970 * 11 10 9 36 36 H 1.08993 * 109.47559 * 62.42536 * 11 10 9 37 37 H 1.08998 * 110.71770 * 35.79484 * 12 10 9 38 38 H 1.08998 * 110.71728 * 159.06837 * 12 10 9 39 39 H 1.08998 * 109.99457 * 218.65928 * 13 12 10 40 40 H 1.09007 * 109.77698 * 97.49747 * 13 12 10 41 41 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 42 42 H 1.09003 * 110.36579 * 143.19056 * 23 14 13 43 43 H 1.08993 * 110.36917 * 265.41008 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0016 -0.0005 5 6 4.6271 0.6557 -1.2866 6 6 6.1571 0.6575 -1.2869 7 6 6.6585 1.3022 -2.5534 8 8 5.8697 1.7188 -3.3751 9 7 7.9833 1.4149 -2.7733 10 6 8.4707 2.0412 -4.0047 11 6 8.0290 1.2443 -5.2338 12 6 10.0132 2.2055 -3.9723 13 6 10.2072 3.5098 -3.1702 14 7 8.9503 4.2673 -3.2584 15 6 8.7026 5.4747 -2.6616 16 1 7.7440 5.9548 -2.7918 17 6 9.6836 6.0814 -1.8894 18 7 10.8521 5.4965 -1.7312 19 14 9.3459 7.7288 -1.0759 20 1 10.5448 8.1588 -0.3125 21 1 9.0325 8.7400 -2.1172 22 1 8.1918 7.5967 -0.1509 23 6 8.0029 3.5149 -4.1010 24 1 -0.3633 0.3322 0.9725 25 1 -0.3633 0.6761 -0.7739 26 1 -0.3633 -1.0083 -0.1986 27 1 4.4822 -1.0242 0.0542 28 1 4.4813 0.5625 0.8607 29 1 4.2629 1.6816 -1.3413 30 1 4.2639 0.0949 -2.1477 31 1 6.5216 -0.3682 -1.2320 32 1 6.5199 1.2186 -0.4257 33 1 8.6142 1.0814 -2.1163 34 1 8.4392 1.7053 -6.1324 35 1 8.3926 0.2199 -5.1525 36 1 6.9406 1.2401 -5.2922 37 1 10.4801 1.3631 -3.4619 38 1 10.4107 2.3150 -4.9813 39 1 11.0224 4.0929 -3.5985 40 1 10.4252 3.2733 -2.1287 41 1 11.5377 5.9208 -1.1919 42 1 6.9886 3.6169 -3.7152 43 1 8.0527 3.8639 -5.1324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484058843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:15 Heat of formation + Delta-G solvation = 17.630738 kcal Electronic energy + Delta-G solvation = -21643.966261 eV Core-core repulsion = 18497.519630 eV Total energy + Delta-G solvation = -3146.446632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.80610 -37.42807 -35.64431 -33.88148 -33.31092 -31.86745 -30.22515 -29.32763 -28.60882 -26.53739 -25.61851 -23.69187 -22.42495 -20.50119 -19.94726 -18.95088 -17.34129 -16.71524 -16.06283 -15.83256 -15.47459 -14.60983 -14.44827 -14.12977 -13.92072 -13.81812 -13.59276 -13.39996 -13.25611 -12.86262 -12.46300 -12.31329 -11.94832 -11.86228 -11.68475 -11.62557 -11.48678 -10.90414 -10.85610 -10.82534 -10.34708 -10.32170 -10.08075 -9.94854 -9.83681 -9.76586 -9.62096 -9.15243 -8.59648 -8.46618 -6.76508 -5.67881 -2.99525 2.61793 2.65337 3.07538 3.43079 3.47066 3.48581 3.59520 4.16592 4.53705 4.88423 4.99764 5.04669 5.14893 5.31340 5.35287 5.41442 5.46019 5.47869 5.51783 5.52638 5.61450 5.65582 5.67081 5.76234 5.87911 6.05104 6.14436 6.18103 6.19178 6.31416 6.38955 6.43681 6.58554 6.72802 6.88114 7.21263 7.57618 7.59127 7.59681 7.82853 7.99979 8.29644 8.69594 9.26942 9.87054 10.53458 11.44139 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004152 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.415660 B = 6742.613075 C = 8020.570149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.008 4.008 5 C -0.097 4.097 6 C -0.142 4.142 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.703 5.703 10 C 0.156 3.844 11 C -0.148 4.148 12 C -0.147 4.147 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.075 0.925 17 C -0.010 4.010 18 N -0.926 5.926 19 Si 0.911 3.089 20 H -0.291 1.291 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.131 3.869 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.397 0.603 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.251 0.749 42 H 0.056 0.944 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -14.566 1.607 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.182 4.182 7 C 0.302 3.698 8 O -0.420 6.420 9 N -0.354 5.354 10 C 0.070 3.930 11 C -0.207 4.207 12 C -0.186 4.186 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.093 0.907 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.212 1.212 22 H -0.213 1.213 23 C 0.004 3.996 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.333 -14.092 1.149 17.512 hybrid contribution 0.339 0.796 0.848 1.211 sum -9.994 -13.297 1.997 16.753 Atomic orbital electron populations 1.18818 0.84842 1.02805 1.02896 1.22392 0.93970 1.02179 1.01874 1.22388 0.93702 1.00854 1.00964 1.18741 0.84350 1.02009 0.99369 1.21248 0.93221 1.02468 0.96529 1.21668 0.97119 1.02122 0.97265 1.20445 0.82370 0.79025 0.87981 1.90646 1.55351 1.48997 1.47040 1.45827 1.06670 1.60732 1.22125 1.21449 0.94426 0.93604 0.83565 1.21980 1.02951 0.98972 0.96757 1.23227 0.93025 1.00642 1.01669 1.21141 0.89060 0.87200 0.97267 1.44435 1.10574 1.20784 1.57119 1.19023 0.98691 0.94153 1.23069 0.90687 1.24756 0.96167 0.98964 1.00696 1.69942 1.04607 1.38779 1.44062 0.86211 0.76803 0.83678 0.79180 1.21651 1.21224 1.21276 1.21887 0.95025 0.88218 0.94466 0.90422 0.90242 0.90460 0.89700 0.89487 0.90682 0.90971 0.89176 0.88668 0.76906 0.92002 0.93233 0.91103 0.91815 0.91043 0.93971 0.93661 0.93859 0.92599 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.06 16 2 C -0.20 -2.43 14.13 -37.12 -0.52 -2.95 16 3 C -0.18 -2.23 13.34 -37.12 -0.50 -2.72 16 4 C -0.01 -0.08 5.70 -29.51 -0.17 -0.25 16 5 C -0.10 -1.18 4.46 -26.73 -0.12 -1.30 16 6 C -0.14 -1.65 5.70 -27.89 -0.16 -1.81 16 7 C 0.52 8.34 7.22 -10.99 -0.08 8.26 16 8 O -0.54 -10.60 12.79 5.56 0.07 -10.53 16 9 N -0.70 -11.28 5.18 -45.62 -0.24 -11.52 16 10 C 0.16 2.79 0.83 -129.67 -0.11 2.68 16 11 C -0.15 -2.29 8.59 37.16 0.32 -1.97 16 12 C -0.15 -2.62 5.99 -24.89 -0.15 -2.77 16 13 C 0.18 4.23 5.37 -3.06 -0.02 4.21 16 14 N -0.60 -15.63 3.39 -170.06 -0.58 -16.21 16 15 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.93 -27.13 10.31 55.49 0.57 -26.56 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.13 2.93 6.10 -2.52 -0.02 2.91 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 5.52 8.49 -40.82 -0.35 5.17 16 34 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.20 6.53 -51.93 -0.34 0.86 16 37 H 0.06 0.97 8.05 -51.93 -0.42 0.56 16 38 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 39 H 0.04 1.12 7.52 -51.93 -0.39 0.73 16 40 H 0.05 1.17 7.37 -51.93 -0.38 0.79 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.06 1.35 6.32 -51.93 -0.33 1.03 16 43 H 0.02 0.51 8.04 -51.93 -0.42 0.10 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -33.62 351.97 -8.53 -42.14 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.23 Total: 2.39 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.41 Total: -2.52 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.24 Total: -54.29 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.62 -8.53 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484058843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.774 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds