Wall clock time and date at job start Tue Mar 31 2020 00:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47207 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 134.19598 * 3 2 1 5 5 C 1.53005 * 109.46894 * 116.94405 * 4 3 2 6 6 C 1.52997 * 109.47340 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47315 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99771 * 359.97438 * 7 6 5 9 9 N 1.34768 * 119.99897 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00137 * 179.97438 * 9 7 6 11 11 C 1.52997 * 110.88668 * 297.57715 * 10 9 7 12 12 C 1.55157 * 111.00716 * 173.64774 * 10 9 7 13 13 C 1.54334 * 103.02095 * 277.23316 * 12 10 9 14 14 N 1.47014 * 107.26782 * 338.14225 * 13 12 10 15 15 C 1.36945 * 125.64902 * 178.84833 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68982 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68887 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47428 * 108.70537 * 358.58102 * 14 13 12 24 24 H 1.09001 * 109.47002 * 288.85947 * 1 2 3 25 25 H 1.08993 * 109.46870 * 48.86035 * 1 2 3 26 26 H 1.09003 * 109.46741 * 168.85882 * 1 2 3 27 27 H 1.08993 * 109.47074 * 356.94474 * 4 3 2 28 28 H 1.09000 * 109.47145 * 236.93934 * 4 3 2 29 29 H 1.09001 * 109.47063 * 59.99509 * 5 4 3 30 30 H 1.08996 * 109.46882 * 300.00237 * 5 4 3 31 31 H 1.08992 * 109.47212 * 59.99647 * 6 5 4 32 32 H 1.09003 * 109.46740 * 300.00173 * 6 5 4 33 33 H 0.97003 * 120.00743 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.46863 * 182.42381 * 11 10 9 35 35 H 1.09006 * 109.46671 * 302.41970 * 11 10 9 36 36 H 1.08993 * 109.47559 * 62.42536 * 11 10 9 37 37 H 1.08998 * 110.71770 * 35.79484 * 12 10 9 38 38 H 1.08998 * 110.71728 * 159.06837 * 12 10 9 39 39 H 1.08998 * 109.99457 * 218.65928 * 13 12 10 40 40 H 1.09007 * 109.77698 * 97.49747 * 13 12 10 41 41 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 42 42 H 1.09003 * 110.36579 * 143.19056 * 23 14 13 43 43 H 1.08993 * 110.36917 * 265.41008 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0016 -0.0005 5 6 4.6271 0.6557 -1.2866 6 6 6.1571 0.6575 -1.2869 7 6 6.6585 1.3022 -2.5534 8 8 5.8697 1.7188 -3.3751 9 7 7.9833 1.4149 -2.7733 10 6 8.4707 2.0412 -4.0047 11 6 8.0290 1.2443 -5.2338 12 6 10.0132 2.2055 -3.9723 13 6 10.2072 3.5098 -3.1702 14 7 8.9503 4.2673 -3.2584 15 6 8.7026 5.4747 -2.6616 16 1 7.7440 5.9548 -2.7918 17 6 9.6836 6.0814 -1.8894 18 7 10.8521 5.4965 -1.7312 19 14 9.3459 7.7288 -1.0759 20 1 10.5448 8.1588 -0.3125 21 1 9.0325 8.7400 -2.1172 22 1 8.1918 7.5967 -0.1509 23 6 8.0029 3.5149 -4.1010 24 1 -0.3633 0.3322 0.9725 25 1 -0.3633 0.6761 -0.7739 26 1 -0.3633 -1.0083 -0.1986 27 1 4.4822 -1.0242 0.0542 28 1 4.4813 0.5625 0.8607 29 1 4.2629 1.6816 -1.3413 30 1 4.2639 0.0949 -2.1477 31 1 6.5216 -0.3682 -1.2320 32 1 6.5199 1.2186 -0.4257 33 1 8.6142 1.0814 -2.1163 34 1 8.4392 1.7053 -6.1324 35 1 8.3926 0.2199 -5.1525 36 1 6.9406 1.2401 -5.2922 37 1 10.4801 1.3631 -3.4619 38 1 10.4107 2.3150 -4.9813 39 1 11.0224 4.0929 -3.5985 40 1 10.4252 3.2733 -2.1287 41 1 11.5377 5.9208 -1.1919 42 1 6.9886 3.6169 -3.7152 43 1 8.0527 3.8639 -5.1324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484058843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:14 Heat of formation + Delta-G solvation = -3.460683 kcal Electronic energy + Delta-G solvation = -21644.880854 eV Core-core repulsion = 18497.519630 eV Total energy + Delta-G solvation = -3147.361225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19025 -38.97265 -36.60774 -35.62386 -34.22311 -33.57064 -31.80821 -30.52281 -30.05398 -27.53063 -27.37500 -25.42358 -23.54933 -22.18913 -21.34566 -20.39355 -18.99556 -18.14083 -17.13569 -17.02484 -16.85281 -16.63961 -15.76881 -15.49939 -15.30255 -14.87177 -14.69491 -14.39584 -14.21675 -14.16368 -13.88672 -13.56415 -13.49155 -13.30064 -13.16741 -12.95132 -12.78945 -12.74323 -12.45873 -12.11955 -12.05093 -11.96988 -11.82519 -11.68768 -11.51297 -10.71520 -10.71128 -10.57442 -10.48946 -9.89808 -8.86643 -7.86345 -5.20071 1.43007 1.45588 1.52227 1.71711 1.77984 1.82248 2.38205 2.47803 3.31389 3.39095 3.58542 3.71652 3.89955 4.05883 4.10855 4.14406 4.21263 4.50784 4.65395 4.65699 4.69466 4.72223 4.75901 4.82166 4.84562 4.85502 4.87756 4.92791 4.94610 5.04408 5.10119 5.15023 5.21950 5.33741 5.37278 5.41743 5.66230 5.73534 5.81849 6.19846 6.73008 6.75804 7.11463 7.45324 7.77279 8.41712 9.23187 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004152 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.415660 B = 6742.613075 C = 8020.570149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.218 4.218 3 C -0.216 4.216 4 C -0.002 4.002 5 C -0.089 4.089 6 C -0.131 4.131 7 C 0.506 3.494 8 O -0.582 6.582 9 N -0.701 5.701 10 C 0.167 3.833 11 C -0.138 4.138 12 C -0.128 4.128 13 C 0.185 3.815 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.066 0.934 17 C -0.058 4.058 18 N -0.945 5.945 19 Si 0.974 3.026 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.127 3.873 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.006 0.994 40 H 0.020 0.980 41 H 0.248 0.752 42 H 0.030 0.970 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -16.409 2.213 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.218 4.218 3 C -0.216 4.216 4 C -0.038 4.038 5 C -0.127 4.127 6 C -0.170 4.170 7 C 0.295 3.705 8 O -0.462 6.462 9 N -0.352 5.352 10 C 0.079 3.921 11 C -0.196 4.196 12 C -0.167 4.167 13 C 0.061 3.939 14 N -0.347 5.347 15 C -0.373 4.373 16 H 0.084 0.916 17 C -0.251 4.251 18 N -0.594 5.594 19 Si 0.802 3.198 20 H -0.213 1.213 21 H -0.208 1.208 22 H -0.207 1.207 23 C 0.001 3.999 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.246 0.754 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.024 0.976 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -10.394 -15.964 1.758 19.130 hybrid contribution 0.294 1.416 0.631 1.578 sum -10.100 -14.548 2.389 17.871 Atomic orbital electron populations 1.19058 0.82568 1.04158 1.04036 1.23432 0.95476 1.01733 1.01197 1.23095 0.94930 1.01675 1.01890 1.18777 0.83322 1.03424 0.98323 1.21122 0.93706 1.00509 0.97389 1.21680 0.96379 1.04105 0.94854 1.21272 0.81980 0.78381 0.88913 1.90634 1.56260 1.50622 1.48731 1.45829 1.07148 1.60287 1.21976 1.21292 0.94095 0.91068 0.85631 1.21893 1.01885 1.00192 0.95674 1.23098 0.93251 0.98370 1.01948 1.20947 0.87189 0.89253 0.96557 1.44682 1.12128 1.20606 1.57240 1.19277 0.98592 0.95710 1.23763 0.91600 1.25514 0.96030 1.02249 1.01338 1.70139 1.05066 1.39852 1.44320 0.85229 0.76702 0.79678 0.78180 1.21348 1.20759 1.20651 1.21993 0.93259 0.91414 0.93266 0.88888 0.89543 0.88714 0.87073 0.88409 0.93977 0.92151 0.85091 0.87619 0.75413 0.91037 0.90320 0.92801 0.88186 0.89410 0.97581 0.96196 0.94253 0.95151 0.96385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.61 10.32 70.18 0.72 0.12 16 2 C -0.22 -5.06 14.13 31.13 0.44 -4.62 16 3 C -0.22 -5.26 13.34 31.13 0.42 -4.84 16 4 C 0.00 -0.04 5.70 28.79 0.16 0.12 16 5 C -0.09 -2.13 4.46 30.59 0.14 -1.99 16 6 C -0.13 -2.79 5.70 29.85 0.17 -2.62 16 7 C 0.51 15.92 7.22 87.66 0.63 16.55 16 8 O -0.58 -23.06 12.79 -3.03 -0.04 -23.10 16 9 N -0.70 -21.31 5.18 -416.65 -2.16 -23.47 16 10 C 0.17 5.70 0.83 5.00 0.00 5.71 16 11 C -0.14 -3.96 8.59 71.98 0.62 -3.34 16 12 C -0.13 -4.31 5.99 31.79 0.19 -4.12 16 13 C 0.19 8.87 5.37 86.73 0.47 9.34 16 14 N -0.62 -32.89 3.39 -691.96 -2.35 -35.24 16 15 C -0.24 -14.36 10.28 84.03 0.86 -13.49 16 16 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 17 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 18 N -0.94 -56.36 10.31 21.65 0.22 -56.14 16 19 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 C 0.13 5.78 6.10 86.86 0.53 6.31 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.41 10.32 8.49 -92.71 -0.79 9.53 16 34 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 35 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.05 1.76 6.53 -2.39 -0.02 1.74 16 37 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 38 H 0.09 2.70 8.02 -2.39 -0.02 2.68 16 39 H 0.01 0.33 7.52 -2.39 -0.02 0.31 16 40 H 0.02 1.04 7.37 -2.38 -0.02 1.02 16 41 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.03 1.53 6.32 -2.39 -0.02 1.51 16 43 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 Total: -1.00 -76.26 351.97 3.73 -72.53 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.20 Total: 16.32 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.82 Total: 0.23 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.28 Total: -114.85 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -76.26 3.73 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484058843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.066 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds