Wall clock time and date at job start Tue Mar 31 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00065 * 2 1 4 4 C 1.52998 * 109.46984 * 124.99573 * 3 2 1 5 5 C 1.50702 * 109.46984 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00095 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00081 * 179.97438 * 5 4 3 8 8 C 1.47852 * 122.22559 * 0.02808 * 7 5 4 9 9 C 1.52717 * 111.05965 * 127.48874 * 8 7 5 10 10 C 1.53864 * 111.52099 * 48.53461 * 9 8 7 11 11 C 1.51343 * 107.27228 * 302.85162 * 10 9 8 12 12 H 1.08995 * 108.79754 * 308.77596 * 11 10 9 13 13 C 1.45727 * 122.22660 * 179.97438 * 7 5 4 14 14 H 1.09003 * 111.06577 * 118.62345 * 13 7 5 15 15 C 1.53435 * 116.36696 * 350.12154 * 13 7 5 16 16 C 1.55468 * 101.66951 * 207.27671 * 15 13 7 17 17 N 1.45025 * 119.02327 * 183.59782 * 11 10 9 18 18 C 1.36934 * 126.56132 * 29.31692 * 17 11 10 19 19 H 1.08004 * 120.00183 * 339.46788 * 18 17 11 20 20 C 1.38816 * 120.00085 * 159.46078 * 18 17 11 21 21 N 1.31622 * 120.00156 * 174.12905 * 20 18 17 22 22 Si 1.86797 * 119.99912 * 354.12057 * 20 18 17 23 23 H 1.48499 * 109.47206 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47450 * 300.00312 * 22 20 18 25 25 H 1.48507 * 109.46807 * 60.00390 * 22 20 18 26 26 H 1.08004 * 119.99710 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99847 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00234 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47055 * 4.99874 * 3 2 1 30 30 H 1.08994 * 109.47080 * 244.99883 * 3 2 1 31 31 H 1.09002 * 109.46978 * 60.00255 * 4 3 2 32 32 H 1.08994 * 109.47466 * 300.00074 * 4 3 2 33 33 H 1.08998 * 109.15682 * 247.89578 * 8 7 5 34 34 H 1.09002 * 109.16146 * 7.13823 * 8 7 5 35 35 H 1.09003 * 109.06661 * 169.06337 * 9 8 7 36 36 H 1.09000 * 109.07282 * 288.07327 * 9 8 7 37 37 H 1.09004 * 109.88178 * 62.53358 * 10 9 8 38 38 H 1.09004 * 109.87978 * 183.60922 * 10 9 8 39 39 H 1.09001 * 110.98392 * 89.18279 * 15 13 7 40 40 H 1.09001 * 110.98810 * 325.37511 * 15 13 7 41 41 H 1.08999 * 109.96063 * 263.21854 * 16 15 13 42 42 H 1.09005 * 109.98956 * 141.99525 * 16 15 13 43 43 H 0.97007 * 119.99717 * 5.05068 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7881 2.6385 1.1820 6 8 3.5690 3.4652 0.3221 7 7 4.7043 2.8876 2.1386 8 6 5.0099 1.9156 3.2100 9 6 6.5101 1.6415 3.2906 10 6 7.3228 2.9479 3.3033 11 6 6.9560 3.7175 2.0528 12 1 7.0594 3.0577 1.1914 13 6 5.4605 4.1325 2.1850 14 1 5.2623 4.6771 3.1082 15 6 5.3361 5.0513 0.9625 16 6 6.6936 5.8082 0.9986 17 7 7.6397 4.9643 1.7680 18 6 8.9170 5.2962 2.1336 19 1 9.3993 4.7732 2.9462 20 6 9.5919 6.3048 1.4597 21 7 10.7729 6.7031 1.8830 22 14 8.8243 7.0966 -0.0479 23 1 9.7388 8.1389 -0.5795 24 1 8.5946 6.0618 -1.0878 25 1 7.5288 7.7193 0.3255 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2356 2.1130 33 1 4.6675 2.3158 4.1643 34 1 4.4868 0.9815 3.0054 35 1 6.7213 1.0817 4.2017 36 1 6.8100 1.0450 2.4289 37 1 7.0725 3.5315 4.1893 38 1 8.3890 2.7213 3.2967 39 1 4.5007 5.7422 1.0768 40 1 5.2374 4.4701 0.0457 41 1 6.5693 6.7719 1.4924 42 1 7.0653 5.9552 -0.0155 43 1 11.2042 6.2434 2.6203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484455600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:04 Heat of formation + Delta-G solvation = 19.853713 kcal Electronic energy + Delta-G solvation = -22707.370663 eV Core-core repulsion = 19561.020426 eV Total energy + Delta-G solvation = -3146.350236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50938 -38.15793 -35.70348 -35.52924 -32.78926 -32.38154 -30.96408 -29.17352 -28.70801 -25.44517 -24.31392 -23.40273 -21.73291 -21.28147 -19.98983 -19.65053 -18.76720 -17.30566 -16.40748 -16.09623 -15.84292 -15.17169 -14.94943 -14.48842 -14.26994 -14.19316 -13.81172 -13.54301 -12.96508 -12.85433 -12.61869 -12.37897 -12.25158 -12.11944 -11.90432 -11.43911 -11.25872 -11.21732 -11.04113 -10.78961 -10.64662 -10.55637 -10.24798 -10.05980 -9.62851 -9.29404 -9.05726 -8.97383 -8.64854 -8.33327 -7.02009 -6.23682 -3.26757 2.01427 2.73759 3.06846 3.48426 3.54745 3.75241 4.37418 4.63528 4.65088 4.71428 4.89713 4.98560 5.00112 5.08355 5.12362 5.24662 5.27233 5.32721 5.44922 5.56273 5.59426 5.59911 5.65831 5.77021 5.80810 5.87387 5.96313 5.98784 6.09724 6.21662 6.29117 6.37870 6.51486 6.53543 6.53806 6.58461 6.68080 6.91879 7.02852 7.59753 7.77989 8.32021 8.35546 9.05029 9.60295 10.29248 11.22518 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.004760 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.498127 B = 5881.390906 C = 6648.130116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.080 4.080 4 C -0.134 4.134 5 C 0.514 3.486 6 O -0.536 6.536 7 N -0.602 5.602 8 C 0.111 3.889 9 C -0.130 4.130 10 C -0.114 4.114 11 C 0.159 3.841 12 H 0.023 0.977 13 C 0.115 3.885 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.104 3.896 17 N -0.603 5.603 18 C -0.317 4.317 19 H 0.076 0.924 20 C -0.021 4.021 21 N -0.932 5.932 22 Si 1.076 2.924 23 H -0.302 1.302 24 H -0.297 1.297 25 H -0.283 1.283 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.033 0.967 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.710 -14.391 1.703 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.118 4.118 4 C -0.174 4.174 5 C 0.303 3.697 6 O -0.413 6.413 7 N -0.335 5.335 8 C -0.012 4.012 9 C -0.169 4.169 10 C -0.152 4.152 11 C 0.050 3.950 12 H 0.041 0.959 13 C 0.011 3.989 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.021 4.021 17 N -0.329 5.329 18 C -0.445 4.445 19 H 0.094 0.906 20 C -0.220 4.220 21 N -0.573 5.573 22 Si 0.910 3.090 23 H -0.230 1.230 24 H -0.225 1.225 25 H -0.211 1.211 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.517 -12.720 0.146 21.649 hybrid contribution -0.095 -1.423 1.310 1.937 sum -17.612 -14.143 1.456 22.634 Atomic orbital electron populations 1.23869 0.95989 1.01811 1.01603 1.23004 0.96081 0.98445 0.99514 1.20514 0.97815 0.95223 0.98199 1.21650 0.98852 0.96106 1.00841 1.20588 0.79430 0.88909 0.80788 1.90688 1.65519 1.48070 1.37014 1.48030 1.39154 1.18138 1.28197 1.21720 0.96690 0.92315 0.90427 1.21913 0.94019 0.98629 1.02346 1.21428 1.00155 0.94880 0.98764 1.20850 0.89546 0.89422 0.95176 0.95941 1.22424 0.92328 0.84781 0.99388 0.90004 1.22686 0.96523 0.97787 0.98274 1.22621 0.88984 0.95064 0.95421 1.44354 1.11740 1.11772 1.65065 1.20100 0.87745 1.21907 1.14740 0.90606 1.25943 0.96179 0.97637 1.02270 1.70933 1.15673 1.41224 1.29508 0.83772 0.73859 0.75623 0.75781 1.23044 1.22543 1.21051 0.88537 0.88608 0.87389 0.90718 0.90117 0.89010 0.89118 0.91478 0.90136 0.90754 0.91734 0.91844 0.91266 0.91303 0.89111 0.93264 0.94993 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 14.32 29.01 0.42 -1.08 16 2 C -0.15 -1.24 9.52 -36.03 -0.34 -1.58 16 3 C -0.08 -0.80 4.95 -27.88 -0.14 -0.93 16 4 C -0.13 -1.30 4.10 -27.88 -0.11 -1.42 16 5 C 0.51 7.33 7.69 -10.98 -0.08 7.24 16 6 O -0.54 -9.47 12.81 5.55 0.07 -9.40 16 7 N -0.60 -8.64 2.91 -163.81 -0.48 -9.11 16 8 C 0.11 1.19 6.32 -3.45 -0.02 1.17 16 9 C -0.13 -1.56 5.92 -26.43 -0.16 -1.72 16 10 C -0.11 -1.93 5.37 -27.12 -0.15 -2.07 16 11 C 0.16 3.24 2.60 -68.08 -0.18 3.06 16 12 H 0.02 0.50 8.05 -51.93 -0.42 0.09 16 13 C 0.12 2.06 3.33 -66.64 -0.22 1.84 16 14 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 15 C -0.11 -2.25 5.01 -25.19 -0.13 -2.38 16 16 C 0.10 2.39 4.66 -1.74 -0.01 2.38 16 17 N -0.60 -15.03 3.21 -163.02 -0.52 -15.55 16 18 C -0.32 -9.09 10.27 -15.06 -0.15 -9.25 16 19 H 0.08 2.26 7.61 -52.48 -0.40 1.86 16 20 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 21 N -0.93 -29.62 13.70 55.49 0.76 -28.86 16 22 Si 1.08 27.86 24.62 -169.99 -4.19 23.68 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.30 -7.55 6.89 56.52 0.39 -7.16 16 25 H -0.28 -6.76 5.34 56.52 0.30 -6.45 16 26 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 27 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.11 0.75 8.06 -52.48 -0.42 0.32 16 29 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 30 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 32 H 0.09 0.72 8.02 -51.93 -0.42 0.30 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.62 6.18 -51.93 -0.32 0.30 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 38 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.87 6.21 -51.93 -0.32 1.55 16 41 H 0.05 1.16 6.85 -51.93 -0.36 0.81 16 42 H 0.03 0.78 4.06 -51.93 -0.21 0.57 16 43 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -33.40 326.10 -7.95 -41.34 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.13 Total: -1.55 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.37 Total: -5.46 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.24 Total: -53.53 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 27.86 SS G_CDS: -4.19 Total: 23.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.40 -7.95 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484455600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.195 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds