Wall clock time and date at job start Tue Mar 31 2020 01:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00065 * 2 1 4 4 C 1.52998 * 109.46984 * 124.99573 * 3 2 1 5 5 C 1.50702 * 109.46984 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00095 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00081 * 179.97438 * 5 4 3 8 8 C 1.47852 * 122.22559 * 0.02808 * 7 5 4 9 9 C 1.52717 * 111.05965 * 127.48874 * 8 7 5 10 10 C 1.53864 * 111.52099 * 48.53461 * 9 8 7 11 11 C 1.51343 * 107.27228 * 302.85162 * 10 9 8 12 12 H 1.08995 * 108.79754 * 308.77596 * 11 10 9 13 13 C 1.45727 * 122.22660 * 179.97438 * 7 5 4 14 14 H 1.09003 * 111.06577 * 118.62345 * 13 7 5 15 15 C 1.53435 * 116.36696 * 350.12154 * 13 7 5 16 16 C 1.55468 * 101.66951 * 207.27671 * 15 13 7 17 17 N 1.45025 * 119.02327 * 183.59782 * 11 10 9 18 18 C 1.36934 * 126.56132 * 29.31692 * 17 11 10 19 19 H 1.08004 * 120.00183 * 339.46788 * 18 17 11 20 20 C 1.38816 * 120.00085 * 159.46078 * 18 17 11 21 21 N 1.31622 * 120.00156 * 174.12905 * 20 18 17 22 22 Si 1.86797 * 119.99912 * 354.12057 * 20 18 17 23 23 H 1.48499 * 109.47206 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47450 * 300.00312 * 22 20 18 25 25 H 1.48507 * 109.46807 * 60.00390 * 22 20 18 26 26 H 1.08004 * 119.99710 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99847 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00234 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47055 * 4.99874 * 3 2 1 30 30 H 1.08994 * 109.47080 * 244.99883 * 3 2 1 31 31 H 1.09002 * 109.46978 * 60.00255 * 4 3 2 32 32 H 1.08994 * 109.47466 * 300.00074 * 4 3 2 33 33 H 1.08998 * 109.15682 * 247.89578 * 8 7 5 34 34 H 1.09002 * 109.16146 * 7.13823 * 8 7 5 35 35 H 1.09003 * 109.06661 * 169.06337 * 9 8 7 36 36 H 1.09000 * 109.07282 * 288.07327 * 9 8 7 37 37 H 1.09004 * 109.88178 * 62.53358 * 10 9 8 38 38 H 1.09004 * 109.87978 * 183.60922 * 10 9 8 39 39 H 1.09001 * 110.98392 * 89.18279 * 15 13 7 40 40 H 1.09001 * 110.98810 * 325.37511 * 15 13 7 41 41 H 1.08999 * 109.96063 * 263.21854 * 16 15 13 42 42 H 1.09005 * 109.98956 * 141.99525 * 16 15 13 43 43 H 0.97007 * 119.99717 * 5.05068 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7881 2.6385 1.1820 6 8 3.5690 3.4652 0.3221 7 7 4.7043 2.8876 2.1386 8 6 5.0099 1.9156 3.2100 9 6 6.5101 1.6415 3.2906 10 6 7.3228 2.9479 3.3033 11 6 6.9560 3.7175 2.0528 12 1 7.0594 3.0577 1.1914 13 6 5.4605 4.1325 2.1850 14 1 5.2623 4.6771 3.1082 15 6 5.3361 5.0513 0.9625 16 6 6.6936 5.8082 0.9986 17 7 7.6397 4.9643 1.7680 18 6 8.9170 5.2962 2.1336 19 1 9.3993 4.7732 2.9462 20 6 9.5919 6.3048 1.4597 21 7 10.7729 6.7031 1.8830 22 14 8.8243 7.0966 -0.0479 23 1 9.7388 8.1389 -0.5795 24 1 8.5946 6.0618 -1.0878 25 1 7.5288 7.7193 0.3255 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2356 2.1130 33 1 4.6675 2.3158 4.1643 34 1 4.4868 0.9815 3.0054 35 1 6.7213 1.0817 4.2017 36 1 6.8100 1.0450 2.4289 37 1 7.0725 3.5315 4.1893 38 1 8.3890 2.7213 3.2967 39 1 4.5007 5.7422 1.0768 40 1 5.2374 4.4701 0.0457 41 1 6.5693 6.7719 1.4924 42 1 7.0653 5.9552 -0.0155 43 1 11.2042 6.2434 2.6203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484455600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:03 Heat of formation + Delta-G solvation = -2.115163 kcal Electronic energy + Delta-G solvation = -22708.323305 eV Core-core repulsion = 19561.020426 eV Total energy + Delta-G solvation = -3147.302878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77656 -39.52812 -37.11279 -36.27059 -34.61435 -33.90020 -32.07034 -30.72905 -30.09357 -26.56093 -26.00242 -24.75050 -23.15034 -22.61024 -21.40226 -20.60824 -19.90926 -19.32012 -17.47983 -17.43802 -16.97316 -16.61613 -16.21608 -15.95957 -15.73214 -15.40788 -14.94181 -14.84154 -14.55406 -14.18763 -13.87770 -13.67505 -13.51795 -13.34708 -13.13382 -12.99108 -12.67586 -12.42445 -12.14091 -11.96681 -11.92077 -11.82888 -11.75362 -11.56490 -11.28569 -11.19290 -10.73459 -10.41543 -10.14633 -9.57904 -9.15696 -8.57948 -5.56359 1.38176 1.42695 1.44954 1.66118 1.68035 1.99548 2.48797 3.05959 3.18604 3.44365 3.74417 3.86932 3.89359 4.00978 4.03583 4.12487 4.19172 4.21879 4.35502 4.38480 4.40234 4.49950 4.59633 4.62682 4.69575 4.74195 4.83616 4.94066 4.96843 5.01140 5.06940 5.12044 5.20701 5.21428 5.26566 5.39857 5.51779 5.68553 5.79725 5.95217 6.09233 6.53063 6.77393 7.23728 7.42866 8.11342 8.87400 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.004760 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.498127 B = 5881.390906 C = 6648.130116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.078 4.078 4 C -0.123 4.123 5 C 0.507 3.493 6 O -0.577 6.577 7 N -0.604 5.604 8 C 0.107 3.893 9 C -0.120 4.120 10 C -0.112 4.112 11 C 0.148 3.852 12 H 0.007 0.993 13 C 0.130 3.870 14 H 0.086 0.914 15 C -0.102 4.102 16 C 0.096 3.904 17 N -0.623 5.623 18 C -0.298 4.298 19 H 0.054 0.946 20 C -0.077 4.077 21 N -0.967 5.967 22 Si 1.109 2.891 23 H -0.309 1.309 24 H -0.293 1.293 25 H -0.253 1.253 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.023 0.977 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.776 -16.939 2.436 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.175 4.175 3 C -0.116 4.116 4 C -0.162 4.162 5 C 0.298 3.702 6 O -0.457 6.457 7 N -0.337 5.337 8 C -0.014 4.014 9 C -0.159 4.159 10 C -0.151 4.151 11 C 0.040 3.960 12 H 0.024 0.976 13 C 0.024 3.976 14 H 0.103 0.897 15 C -0.140 4.140 16 C -0.028 4.028 17 N -0.349 5.349 18 C -0.427 4.427 19 H 0.071 0.929 20 C -0.270 4.270 21 N -0.611 5.611 22 Si 0.938 3.062 23 H -0.238 1.238 24 H -0.222 1.222 25 H -0.178 1.178 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.634 -15.324 0.911 25.718 hybrid contribution 0.834 -0.713 1.114 1.564 sum -19.800 -16.037 2.024 25.560 Atomic orbital electron populations 1.24036 0.96040 1.02429 1.00649 1.22984 0.96164 0.98007 1.00297 1.20448 0.97601 0.95915 0.97648 1.21677 0.98858 0.93733 1.01936 1.21472 0.79061 0.90040 0.79676 1.90669 1.66757 1.49764 1.38534 1.48163 1.38732 1.17410 1.29348 1.22052 0.95836 0.93371 0.90104 1.21891 0.94264 0.95632 1.04106 1.21431 0.99576 0.97220 0.96855 1.21100 0.91184 0.87644 0.96023 0.97590 1.22049 0.90836 0.86194 0.98471 0.89657 1.22543 0.94589 0.97951 0.98880 1.22697 0.90491 0.95297 0.94324 1.44478 1.11155 1.14130 1.65186 1.20017 0.89279 1.20364 1.13047 0.92857 1.27041 0.96300 0.99129 1.04557 1.71018 1.17161 1.42596 1.30369 0.83364 0.74467 0.75134 0.73245 1.23780 1.22173 1.17803 0.89014 0.87007 0.85643 0.92279 0.92035 0.86488 0.86231 0.89583 0.85828 0.87364 0.91831 0.92001 0.94033 0.90025 0.90072 0.93789 0.95975 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.16 -2.03 9.52 25.64 0.24 -1.79 16 3 C -0.08 -1.37 4.95 29.85 0.15 -1.23 16 4 C -0.12 -1.86 4.10 29.85 0.12 -1.74 16 5 C 0.51 13.01 7.69 87.66 0.67 13.68 16 6 O -0.58 -19.68 12.81 -3.04 -0.04 -19.72 16 7 N -0.60 -15.41 2.91 -790.57 -2.30 -17.71 16 8 C 0.11 1.76 6.32 86.03 0.54 2.30 16 9 C -0.12 -2.45 5.92 30.79 0.18 -2.27 16 10 C -0.11 -3.71 5.37 30.34 0.16 -3.54 16 11 C 0.15 5.98 2.60 45.68 0.12 6.10 16 12 H 0.01 0.29 8.05 -2.39 -0.02 0.27 16 13 C 0.13 4.44 3.33 46.24 0.15 4.59 16 14 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 15 C -0.10 -3.90 5.01 31.59 0.16 -3.74 16 16 C 0.10 4.42 4.66 86.88 0.40 4.83 16 17 N -0.62 -31.42 3.21 -669.68 -2.15 -33.57 16 18 C -0.30 -17.61 10.27 84.03 0.86 -16.75 16 19 H 0.05 3.33 7.61 -2.91 -0.02 3.31 16 20 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 21 N -0.97 -63.66 13.70 21.65 0.30 -63.36 16 22 Si 1.11 57.36 24.62 68.60 1.69 59.05 16 23 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 24 H -0.29 -14.83 6.89 99.48 0.69 -14.14 16 25 H -0.25 -11.72 5.34 99.48 0.53 -11.19 16 26 H 0.09 1.20 7.84 -2.91 -0.02 1.18 16 27 H 0.11 1.02 8.06 -2.91 -0.02 1.00 16 28 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.06 1.20 7.75 -2.39 -0.02 1.18 16 30 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.12 1.26 7.76 -2.39 -0.02 1.24 16 32 H 0.12 1.20 8.02 -2.39 -0.02 1.18 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 1.06 6.18 -2.39 -0.01 1.04 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 38 H 0.04 1.57 7.87 -2.38 -0.02 1.55 16 39 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.08 3.31 6.21 -2.39 -0.01 3.30 16 41 H 0.04 2.05 6.85 -2.39 -0.02 2.04 16 42 H 0.02 1.09 4.06 -2.38 -0.01 1.08 16 43 H 0.25 16.28 8.73 -92.70 -0.81 15.47 16 Total: -1.00 -76.80 326.10 3.45 -73.35 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.74 Total: 7.22 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.21 Total: -5.27 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -4.15 Total: -114.65 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.04 Total: -19.72 kcal Atomic # 14 Polarization: 57.36 SS G_CDS: 1.69 Total: 59.05 kcal Total: -76.80 3.45 -73.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484455600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.238 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds