Wall clock time and date at job start Tue Mar 31 2020 00:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00042 * 2 1 4 4 C 1.52999 * 109.46906 * 122.27583 * 3 2 1 5 5 C 1.53000 * 109.47045 * 173.96845 * 4 3 2 6 6 C 1.50697 * 109.47372 * 294.14812 * 5 4 3 7 7 C 1.31004 * 119.99876 * 124.99490 * 6 5 4 8 8 C 1.50703 * 109.47287 * 293.96671 * 4 3 2 9 9 O 1.21276 * 120.00452 * 240.00173 * 8 4 3 10 10 N 1.34784 * 119.99752 * 60.00126 * 8 4 3 11 11 C 1.46492 * 119.99906 * 180.02562 * 10 8 4 12 12 H 1.09000 * 110.88580 * 31.11936 * 11 10 8 13 13 C 1.55155 * 111.00328 * 154.99955 * 11 10 8 14 14 C 1.54327 * 102.94217 * 153.57455 * 13 11 10 15 15 N 1.47026 * 107.27267 * 337.80874 * 14 13 11 16 16 C 1.36931 * 125.64707 * 178.96053 * 15 14 13 17 17 H 1.08006 * 119.99581 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00362 * 359.97182 * 16 15 14 19 19 N 1.31620 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46748 * 90.00585 * 20 18 16 22 22 H 1.48504 * 109.47141 * 210.00553 * 20 18 16 23 23 H 1.48502 * 109.46958 * 330.00567 * 20 18 16 24 24 C 1.47423 * 108.70067 * 358.93752 * 15 14 13 25 25 H 1.07996 * 119.99726 * 180.27339 * 1 2 3 26 26 H 1.08005 * 119.99927 * 0.26818 * 1 2 3 27 27 H 1.07997 * 119.99804 * 179.73514 * 2 1 3 28 28 H 1.09001 * 109.47265 * 242.27771 * 3 2 1 29 29 H 1.09003 * 109.46783 * 2.27890 * 3 2 1 30 30 H 1.09000 * 109.47270 * 53.96587 * 4 3 2 31 31 H 1.08999 * 109.47244 * 54.15438 * 5 4 3 32 32 H 1.09001 * 109.46753 * 174.15088 * 5 4 3 33 33 H 1.07994 * 120.00234 * 305.00415 * 6 5 4 34 34 H 1.07994 * 119.99889 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.99804 * 179.97438 * 7 6 5 36 36 H 0.96996 * 119.99639 * 0.02562 * 10 8 4 37 37 H 1.08999 * 110.72018 * 271.93944 * 13 11 10 38 38 H 1.09001 * 110.72371 * 35.03913 * 13 11 10 39 39 H 1.09006 * 109.88064 * 97.22181 * 14 13 11 40 40 H 1.09000 * 109.88385 * 218.38595 * 14 13 11 41 41 H 0.97006 * 119.99985 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.36726 * 265.28948 * 24 15 14 43 43 H 1.09005 * 110.36632 * 142.96418 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9856 1.3616 1.2196 5 6 3.8591 2.6153 1.1410 6 6 4.7924 2.5042 -0.0369 7 6 4.8145 3.4469 -0.9463 8 6 2.1546 1.4064 2.4760 9 8 2.2514 2.3482 3.2339 10 7 1.3037 0.3996 2.7575 11 6 0.4955 0.4434 3.9785 12 1 0.2568 1.4718 4.2498 13 6 -0.7945 -0.4043 3.8222 14 6 -1.1236 -0.8042 5.2759 15 7 0.1229 -0.7038 6.0491 16 6 0.2536 -0.9556 7.3887 17 1 1.2171 -0.8534 7.8659 18 6 -0.8522 -1.3423 8.1334 19 7 -2.0263 -1.4673 7.5517 20 14 -0.6738 -1.6864 9.9608 21 1 -0.9073 -0.4349 10.7252 22 1 -1.6683 -2.7101 10.3711 23 1 0.6961 -2.1879 10.2385 24 6 1.2089 -0.2877 5.1431 25 1 -0.5399 -0.9353 0.0045 26 1 -0.5400 0.9353 -0.0044 27 1 1.8500 -0.9353 0.0043 28 1 2.6592 1.3807 -0.9097 29 1 1.3559 2.1332 0.0409 30 1 3.6213 0.4763 1.2359 31 1 3.2245 3.4932 1.0202 32 1 4.4408 2.7108 2.0578 33 1 5.4430 1.6474 -0.1314 34 1 4.1641 4.3038 -0.8517 35 1 5.4837 3.3674 -1.7903 36 1 1.2266 -0.3538 2.1515 37 1 -1.5995 0.1937 3.3951 38 1 -0.6047 -1.2862 3.2104 39 1 -1.8705 -0.1252 5.6872 40 1 -1.4955 -1.8284 5.3036 41 1 -2.7990 -1.7379 8.0720 42 1 1.7473 -1.1593 4.7708 43 1 1.8914 0.3905 5.6554 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490544421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:50 Heat of formation + Delta-G solvation = 17.595786 kcal Electronic energy + Delta-G solvation = -21964.105807 eV Core-core repulsion = 18817.657660 eV Total energy + Delta-G solvation = -3146.448148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03711 -37.46799 -36.33119 -34.81340 -33.61720 -31.77915 -31.10774 -29.10726 -27.13106 -26.55825 -24.63439 -23.27770 -20.49672 -20.37708 -19.91021 -19.88630 -19.66892 -17.18360 -16.66323 -15.99052 -15.63602 -15.06749 -14.81493 -14.56452 -14.16647 -13.94754 -13.87037 -13.26139 -12.98323 -12.70149 -12.42250 -12.38815 -12.14473 -11.83676 -11.73791 -11.22406 -11.13102 -11.07266 -10.97029 -10.86332 -10.72680 -10.31385 -10.08391 -9.89463 -9.82087 -9.69492 -9.38256 -9.29277 -8.64052 -8.55245 -6.81516 -5.69323 -3.02676 2.01870 2.10277 2.88225 3.42191 3.44745 3.48109 3.50333 4.49973 4.52331 4.64134 4.76481 4.88074 5.03507 5.10649 5.15968 5.29585 5.39506 5.46929 5.50702 5.59315 5.65821 5.72810 5.77377 5.79124 5.83999 5.86987 6.05695 6.24175 6.37152 6.42161 6.43168 6.45725 6.55215 6.57055 6.65554 6.73838 7.04364 7.56095 7.60202 7.79103 7.86485 8.26969 8.51333 9.24085 9.84052 10.49364 11.42587 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030256 B = 0.003725 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.213065 B = 7514.896164 C = 8204.479273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.176 4.176 3 C -0.083 4.083 4 C -0.099 4.099 5 C -0.077 4.077 6 C -0.148 4.148 7 C -0.198 4.198 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.713 5.713 11 C 0.126 3.874 12 H 0.095 0.905 13 C -0.147 4.147 14 C 0.180 3.820 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.129 3.871 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 4.037 -19.565 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.234 4.234 8 C 0.299 3.701 9 O -0.421 6.421 10 N -0.365 5.365 11 C 0.021 3.979 12 H 0.113 0.887 13 C -0.186 4.186 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.002 3.998 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.413 4.635 -18.821 21.130 hybrid contribution -0.019 -0.707 0.673 0.976 sum 8.394 3.928 -18.148 20.378 Atomic orbital electron populations 1.23977 0.95894 1.02344 0.98774 1.22979 0.96281 0.98458 1.01674 1.20753 0.98089 0.95919 0.97266 1.21314 0.96872 1.00790 0.93063 1.20582 0.96388 0.96961 0.97529 1.22980 0.98636 0.99121 0.95867 1.23848 1.01915 0.98998 0.98669 1.20521 0.80163 0.82432 0.86968 1.90701 1.66684 1.34135 1.50536 1.46283 1.42024 1.23379 1.24840 1.22283 0.90924 1.00744 0.83999 0.88735 1.23148 0.96057 0.98439 1.00975 1.21140 0.88931 1.00264 0.84218 1.44392 1.03723 1.80086 1.04875 1.19077 0.95009 1.38920 0.82420 0.90413 1.24800 0.95518 1.01882 0.98313 1.69953 0.99095 1.53775 1.34329 0.86097 0.77070 0.77624 0.84853 1.21570 1.21687 1.20700 1.21821 0.91932 0.95451 0.90604 0.88053 0.88454 0.86913 0.89772 0.91048 0.88442 0.90752 0.89770 0.87367 0.88580 0.88654 0.76581 0.91748 0.92256 0.93295 0.93661 0.93771 0.96433 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 13.58 29.01 0.39 -1.12 16 2 C -0.18 -1.47 6.86 -36.03 -0.25 -1.71 16 3 C -0.08 -0.72 5.03 -27.88 -0.14 -0.86 16 4 C -0.10 -1.03 2.26 -91.77 -0.21 -1.23 16 5 C -0.08 -0.79 4.49 -27.88 -0.13 -0.92 16 6 C -0.15 -1.21 8.45 -36.03 -0.30 -1.51 16 7 C -0.20 -1.49 14.32 29.01 0.42 -1.07 16 8 C 0.51 7.62 7.14 -10.98 -0.08 7.55 16 9 O -0.54 -10.36 15.54 5.56 0.09 -10.27 16 10 N -0.71 -10.45 4.64 -51.73 -0.24 -10.69 16 11 C 0.13 2.34 3.42 -65.78 -0.23 2.12 16 12 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 13 C -0.15 -2.69 6.60 -24.90 -0.16 -2.85 16 14 C 0.18 4.37 5.37 -3.06 -0.02 4.35 16 15 N -0.60 -15.88 3.39 -170.06 -0.58 -16.46 16 16 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 20 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.13 2.85 6.93 -2.53 -0.02 2.84 16 25 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 26 H 0.10 0.89 7.84 -52.48 -0.41 0.48 16 27 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.08 0.63 7.23 -51.93 -0.38 0.25 16 29 H 0.07 0.68 7.78 -51.93 -0.40 0.28 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.82 7.79 -51.93 -0.40 0.41 16 32 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 33 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.10 0.72 7.84 -52.49 -0.41 0.31 16 35 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.40 4.88 5.56 -40.82 -0.23 4.66 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 39 H 0.05 1.32 7.38 -51.93 -0.38 0.93 16 40 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -32.33 348.30 -8.05 -40.38 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.15 Total: 2.54 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.97 Total: -1.43 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.24 Total: -53.95 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.33 -8.05 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490544421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.980 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds