Wall clock time and date at job start Tue Mar 31 2020 00:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00042 * 2 1 4 4 C 1.52999 * 109.46906 * 122.27583 * 3 2 1 5 5 C 1.53000 * 109.47045 * 173.96845 * 4 3 2 6 6 C 1.50697 * 109.47372 * 294.14812 * 5 4 3 7 7 C 1.31004 * 119.99876 * 124.99490 * 6 5 4 8 8 C 1.50703 * 109.47287 * 293.96671 * 4 3 2 9 9 O 1.21276 * 120.00452 * 240.00173 * 8 4 3 10 10 N 1.34784 * 119.99752 * 60.00126 * 8 4 3 11 11 C 1.46492 * 119.99906 * 180.02562 * 10 8 4 12 12 H 1.09000 * 110.88580 * 31.11936 * 11 10 8 13 13 C 1.55155 * 111.00328 * 154.99955 * 11 10 8 14 14 C 1.54327 * 102.94217 * 153.57455 * 13 11 10 15 15 N 1.47026 * 107.27267 * 337.80874 * 14 13 11 16 16 C 1.36931 * 125.64707 * 178.96053 * 15 14 13 17 17 H 1.08006 * 119.99581 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00362 * 359.97182 * 16 15 14 19 19 N 1.31620 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46748 * 90.00585 * 20 18 16 22 22 H 1.48504 * 109.47141 * 210.00553 * 20 18 16 23 23 H 1.48502 * 109.46958 * 330.00567 * 20 18 16 24 24 C 1.47423 * 108.70067 * 358.93752 * 15 14 13 25 25 H 1.07996 * 119.99726 * 180.27339 * 1 2 3 26 26 H 1.08005 * 119.99927 * 0.26818 * 1 2 3 27 27 H 1.07997 * 119.99804 * 179.73514 * 2 1 3 28 28 H 1.09001 * 109.47265 * 242.27771 * 3 2 1 29 29 H 1.09003 * 109.46783 * 2.27890 * 3 2 1 30 30 H 1.09000 * 109.47270 * 53.96587 * 4 3 2 31 31 H 1.08999 * 109.47244 * 54.15438 * 5 4 3 32 32 H 1.09001 * 109.46753 * 174.15088 * 5 4 3 33 33 H 1.07994 * 120.00234 * 305.00415 * 6 5 4 34 34 H 1.07994 * 119.99889 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.99804 * 179.97438 * 7 6 5 36 36 H 0.96996 * 119.99639 * 0.02562 * 10 8 4 37 37 H 1.08999 * 110.72018 * 271.93944 * 13 11 10 38 38 H 1.09001 * 110.72371 * 35.03913 * 13 11 10 39 39 H 1.09006 * 109.88064 * 97.22181 * 14 13 11 40 40 H 1.09000 * 109.88385 * 218.38595 * 14 13 11 41 41 H 0.97006 * 119.99985 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.36726 * 265.28948 * 24 15 14 43 43 H 1.09005 * 110.36632 * 142.96418 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9856 1.3616 1.2196 5 6 3.8591 2.6153 1.1410 6 6 4.7924 2.5042 -0.0369 7 6 4.8145 3.4469 -0.9463 8 6 2.1546 1.4064 2.4760 9 8 2.2514 2.3482 3.2339 10 7 1.3037 0.3996 2.7575 11 6 0.4955 0.4434 3.9785 12 1 0.2568 1.4718 4.2498 13 6 -0.7945 -0.4043 3.8222 14 6 -1.1236 -0.8042 5.2759 15 7 0.1229 -0.7038 6.0491 16 6 0.2536 -0.9556 7.3887 17 1 1.2171 -0.8534 7.8659 18 6 -0.8522 -1.3423 8.1334 19 7 -2.0263 -1.4673 7.5517 20 14 -0.6738 -1.6864 9.9608 21 1 -0.9073 -0.4349 10.7252 22 1 -1.6683 -2.7101 10.3711 23 1 0.6961 -2.1879 10.2385 24 6 1.2089 -0.2877 5.1431 25 1 -0.5399 -0.9353 0.0045 26 1 -0.5400 0.9353 -0.0044 27 1 1.8500 -0.9353 0.0043 28 1 2.6592 1.3807 -0.9097 29 1 1.3559 2.1332 0.0409 30 1 3.6213 0.4763 1.2359 31 1 3.2245 3.4932 1.0202 32 1 4.4408 2.7108 2.0578 33 1 5.4430 1.6474 -0.1314 34 1 4.1641 4.3038 -0.8517 35 1 5.4837 3.3674 -1.7903 36 1 1.2266 -0.3538 2.1515 37 1 -1.5995 0.1937 3.3951 38 1 -0.6047 -1.2862 3.2104 39 1 -1.8705 -0.1252 5.6872 40 1 -1.4955 -1.8284 5.3036 41 1 -2.7990 -1.7379 8.0720 42 1 1.7473 -1.1593 4.7708 43 1 1.8914 0.3905 5.6554 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490544421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:49 Heat of formation + Delta-G solvation = -2.091031 kcal Electronic energy + Delta-G solvation = -21964.959492 eV Core-core repulsion = 18817.657660 eV Total energy + Delta-G solvation = -3147.301832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25334 -39.09158 -37.32707 -35.89807 -34.92815 -33.55812 -31.93901 -30.94932 -28.86262 -27.29057 -26.54217 -24.42715 -22.14534 -21.83814 -21.07939 -20.74603 -20.49733 -19.00949 -17.96605 -17.40565 -16.69577 -16.47843 -16.09524 -15.84981 -15.63413 -15.16646 -14.80904 -14.55238 -14.19980 -14.06562 -13.85700 -13.72170 -13.59107 -13.22927 -12.95924 -12.77548 -12.53489 -12.40467 -12.13913 -12.04482 -11.90184 -11.86594 -11.82303 -11.72553 -11.58438 -10.83417 -10.73528 -10.30925 -10.05503 -9.92637 -8.93549 -7.87736 -5.24087 1.36792 1.44524 1.47081 1.47433 1.55636 1.70323 2.21852 2.50013 3.30739 3.61411 3.68935 3.76098 3.87931 4.01284 4.07202 4.18661 4.21082 4.35553 4.41507 4.50626 4.54160 4.59961 4.72310 4.79246 4.85300 4.91364 4.96406 5.08616 5.09816 5.12434 5.15723 5.29649 5.40630 5.56285 5.63370 5.71848 5.79533 5.80926 5.92089 5.96502 6.16916 6.63128 7.07677 7.32373 7.73016 8.36733 9.22343 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030256 B = 0.003725 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.213065 B = 7514.896164 C = 8204.479273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.177 4.177 3 C -0.077 4.077 4 C -0.087 4.087 5 C -0.075 4.075 6 C -0.153 4.153 7 C -0.192 4.192 8 C 0.510 3.490 9 O -0.590 6.590 10 N -0.699 5.699 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.125 4.125 14 C 0.185 3.815 15 N -0.626 5.626 16 C -0.248 4.248 17 H 0.077 0.923 18 C -0.063 4.063 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.270 1.270 24 C 0.129 3.871 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.413 0.587 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.012 0.988 40 H 0.018 0.982 41 H 0.249 0.751 42 H 0.032 0.968 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 3.228 -21.601 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.195 4.195 3 C -0.114 4.114 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.171 4.171 7 C -0.228 4.228 8 C 0.298 3.702 9 O -0.470 6.470 10 N -0.353 5.353 11 C 0.037 3.963 12 H 0.089 0.911 13 C -0.164 4.164 14 C 0.060 3.940 15 N -0.353 5.353 16 C -0.377 4.377 17 H 0.095 0.905 18 C -0.256 4.256 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.195 1.195 24 C 0.002 3.998 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.151 0.849 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.253 0.747 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.709 3.814 -20.909 23.366 hybrid contribution -0.380 -0.393 1.285 1.396 sum 9.329 3.421 -19.624 21.996 Atomic orbital electron populations 1.24087 0.96271 1.02496 0.99119 1.23138 0.96217 0.98899 1.01197 1.20726 0.97763 0.95941 0.96991 1.21330 0.96622 1.01853 0.91047 1.20517 0.96436 0.96466 0.97859 1.22914 0.98832 1.00306 0.95065 1.24015 1.01582 0.98364 0.98852 1.21412 0.79692 0.81297 0.87816 1.90689 1.67987 1.35904 1.52413 1.46107 1.41447 1.24167 1.23531 1.21771 0.91108 0.98894 0.84546 0.91149 1.22953 0.96377 0.99777 0.97266 1.20934 0.87713 0.97814 0.87560 1.44681 1.05455 1.80180 1.04967 1.19428 0.95219 1.39028 0.84037 0.90490 1.25656 0.95249 1.01988 1.02701 1.70163 0.99545 1.54334 1.35659 0.85056 0.77428 0.77248 0.79443 1.21379 1.21547 1.19451 1.21932 0.91087 0.95710 0.91085 0.87110 0.89303 0.84938 0.87755 0.92238 0.85949 0.92150 0.91790 0.85627 0.89008 0.86867 0.74691 0.89528 0.89234 0.96938 0.96405 0.94191 0.95055 0.95848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 13.58 67.78 0.92 -1.79 16 2 C -0.18 -2.35 6.86 25.65 0.18 -2.17 16 3 C -0.08 -1.12 5.03 29.85 0.15 -0.97 16 4 C -0.09 -1.62 2.26 -11.54 -0.03 -1.65 16 5 C -0.08 -1.46 4.49 29.85 0.13 -1.33 16 6 C -0.15 -2.12 8.45 25.64 0.22 -1.90 16 7 C -0.19 -2.40 14.32 67.78 0.97 -1.43 16 8 C 0.51 14.63 7.14 87.66 0.63 15.25 16 9 O -0.59 -22.81 15.54 -3.02 -0.05 -22.86 16 10 N -0.70 -19.27 4.64 -435.96 -2.02 -21.29 16 11 C 0.14 5.27 3.42 46.39 0.16 5.43 16 12 H 0.07 2.97 7.54 -2.39 -0.02 2.96 16 13 C -0.13 -4.41 6.60 31.78 0.21 -4.20 16 14 C 0.18 9.19 5.37 86.73 0.47 9.65 16 15 N -0.63 -33.62 3.39 -691.96 -2.35 -35.97 16 16 C -0.25 -14.54 10.28 84.03 0.86 -13.68 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 18 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 19 N -0.95 -57.63 10.31 21.65 0.22 -57.41 16 20 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.13 5.70 6.93 86.86 0.60 6.30 16 25 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 26 H 0.09 1.46 7.84 -2.91 -0.02 1.44 16 27 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.10 1.17 7.23 -2.39 -0.02 1.15 16 29 H 0.06 1.03 7.78 -2.39 -0.02 1.01 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.32 7.79 -2.39 -0.02 1.30 16 32 H 0.06 1.50 7.93 -2.39 -0.02 1.48 16 33 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.09 1.22 7.84 -2.91 -0.02 1.20 16 35 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.41 8.86 5.56 -92.71 -0.52 8.35 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.09 2.65 8.00 -2.39 -0.02 2.63 16 39 H 0.01 0.69 7.38 -2.38 -0.02 0.68 16 40 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 41 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -72.77 348.30 4.21 -68.55 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.45 Total: 15.80 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.93 Total: 4.33 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -4.15 Total: -114.67 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -72.77 4.21 -68.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490544421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.462 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds