Wall clock time and date at job start Tue Mar 31 2020 00:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47571 * 353.43226 * 3 2 1 5 5 C 1.53002 * 109.47480 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47216 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.62804 * 359.97438 * 8 6 5 10 10 C 1.53198 * 108.77270 * 233.60679 * 9 8 6 11 11 C 1.53038 * 109.31596 * 305.36732 * 10 9 8 12 12 C 1.53046 * 109.53657 * 61.36438 * 11 10 9 13 13 H 1.08995 * 109.49630 * 58.61780 * 12 11 10 14 14 C 1.52996 * 109.49762 * 178.68909 * 12 11 10 15 15 N 1.46504 * 109.46681 * 294.99560 * 14 12 11 16 16 C 1.36943 * 119.99781 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48496 * 109.47031 * 59.99836 * 20 18 16 22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47169 * 300.00118 * 20 18 16 24 24 C 1.46924 * 120.63010 * 179.97438 * 8 6 5 25 25 H 4.44647 * 5.63294 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.47272 * 233.42874 * 3 2 1 27 27 H 1.09000 * 109.47485 * 113.43289 * 3 2 1 28 28 H 1.08996 * 109.47210 * 59.99823 * 4 3 2 29 29 H 1.09009 * 109.46914 * 299.99912 * 4 3 2 30 30 H 1.08996 * 109.47261 * 59.99587 * 5 4 3 31 31 H 1.09000 * 109.46886 * 299.99576 * 5 4 3 32 32 H 1.08994 * 109.58578 * 113.82585 * 9 8 6 33 33 H 1.09001 * 109.59115 * 353.39186 * 9 8 6 34 34 H 1.08997 * 109.49796 * 185.41278 * 10 9 8 35 35 H 1.09003 * 109.49580 * 65.31962 * 10 9 8 36 36 H 1.09000 * 109.46201 * 301.34849 * 11 10 9 37 37 H 1.08993 * 109.45197 * 181.37654 * 11 10 9 38 38 H 1.09006 * 109.47179 * 175.00177 * 14 12 11 39 39 H 1.08997 * 109.47540 * 54.99640 * 14 12 11 40 40 H 0.97000 * 120.00410 * 0.02562 * 15 14 12 41 41 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 42 42 H 1.09011 * 109.58284 * 6.60012 * 24 8 6 43 43 H 1.09002 * 109.58335 * 246.18289 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4321 0.1650 5 6 4.6868 -1.4313 0.1656 6 6 5.1898 -2.8425 0.3288 7 8 4.4021 -3.7586 0.4346 8 7 6.5150 -3.0865 0.3570 9 6 7.4814 -1.9871 0.2294 10 6 8.4539 -2.3151 -0.9079 11 6 9.0890 -3.6838 -0.6521 12 6 7.9982 -4.7570 -0.6246 13 1 7.4622 -4.7554 -1.5737 14 6 8.6374 -6.1291 -0.4014 15 7 9.4834 -6.4661 -1.5489 16 6 10.1618 -7.6555 -1.5736 17 1 10.0734 -8.3447 -0.7468 18 6 10.9680 -7.9722 -2.6583 19 7 11.0762 -7.1320 -3.6655 20 14 11.8994 -9.5912 -2.6883 21 1 10.9353 -10.7183 -2.6166 22 1 12.6817 -9.6889 -3.9468 23 1 12.8213 -9.6535 -1.5258 24 6 7.0207 -4.4567 0.5160 25 1 -1.0497 -0.0005 -0.0001 26 1 3.0091 0.6131 0.8254 27 1 3.0092 0.4095 -0.9429 28 1 2.7937 -2.0445 -0.6603 29 1 2.7936 -1.8409 1.1080 30 1 5.0494 -0.8189 0.9911 31 1 5.0502 -1.0223 -0.7771 32 1 8.0342 -1.8765 1.1623 33 1 6.9534 -1.0608 0.0030 34 1 9.2335 -1.5546 -0.9507 35 1 7.9132 -2.3361 -1.8542 36 1 9.6086 -3.6697 0.3059 37 1 9.7995 -3.9086 -1.4474 38 1 7.8555 -6.8809 -0.2932 39 1 9.2450 -6.1041 0.5031 40 1 9.5631 -5.8469 -2.2913 41 1 11.6392 -7.3535 -4.4236 42 1 6.1885 -5.1599 0.4788 43 1 7.5358 -4.5474 1.4723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491146833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:09 Heat of formation + Delta-G solvation = 6.590041 kcal Electronic energy + Delta-G solvation = -21186.389446 eV Core-core repulsion = 18039.464054 eV Total energy + Delta-G solvation = -3146.925392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26523 -37.79427 -35.81147 -34.96247 -32.93609 -32.38220 -31.67388 -30.03108 -28.25524 -25.55587 -25.22212 -23.05132 -22.32913 -21.69946 -19.90853 -18.99750 -18.31160 -17.24495 -16.89255 -16.17934 -15.90652 -14.88133 -14.76828 -14.41374 -14.28755 -14.17127 -13.80003 -13.49758 -13.24445 -13.03843 -12.88799 -12.50151 -12.43311 -12.11243 -11.96189 -11.60497 -11.25331 -11.02831 -10.89696 -10.80187 -10.61010 -10.48418 -10.35865 -10.34532 -10.18629 -10.02463 -9.76488 -9.62741 -8.85619 -8.57422 -6.90120 -5.75122 -3.03372 2.52895 2.58407 2.61443 2.99279 3.45479 3.49652 3.50787 4.07283 4.37268 4.60811 4.69812 4.72846 4.81611 4.98953 5.01608 5.13111 5.17781 5.22516 5.27271 5.31849 5.37550 5.51638 5.58689 5.62464 5.76843 5.84515 5.85558 5.88513 5.99542 6.04262 6.10382 6.18941 6.23208 6.47264 6.56114 6.67504 6.81465 6.91330 7.36471 7.40882 7.71373 8.16818 8.44086 9.55111 10.13112 10.47970 11.47847 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034860 B = 0.002779 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.009982 B =10074.454098 C =10322.334677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.543 6.543 8 N -0.610 5.610 9 C 0.107 3.893 10 C -0.136 4.136 11 C -0.112 4.112 12 C -0.106 4.106 13 H 0.073 0.927 14 C 0.159 3.841 15 N -0.730 5.730 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.118 3.882 25 H 0.216 0.784 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.091 0.909 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 18.402 8.858 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.185 4.185 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.300 3.700 7 O -0.421 6.421 8 N -0.343 5.343 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.149 4.149 12 C -0.126 4.126 13 H 0.091 0.909 14 C 0.031 3.969 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.004 4.004 25 H 0.233 0.767 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.135 17.749 8.962 23.830 hybrid contribution 0.539 -0.664 -0.382 0.937 sum -12.595 17.085 8.580 22.894 Atomic orbital electron populations 1.24911 0.96018 1.00757 1.01319 1.23113 0.94597 1.00461 1.00287 1.18773 0.84871 0.98091 1.03295 1.21292 0.93045 0.95143 1.04319 1.21703 0.97219 0.94732 1.04311 1.20633 0.81825 0.91358 0.76163 1.90704 1.54813 1.46579 1.49960 1.48164 1.05393 1.08627 1.72129 1.21797 0.91190 0.89232 0.99403 1.21955 0.98515 0.98675 0.98280 1.21531 0.97857 0.92669 1.02874 1.21665 0.95882 0.96466 0.98568 0.90859 1.20590 0.92957 0.91646 0.91676 1.42340 1.54308 1.21237 1.19612 1.19198 1.19965 0.95177 1.02620 0.91241 1.24734 1.00864 0.98562 0.96914 1.69643 1.43445 1.36311 1.08968 0.86254 0.79649 0.83508 0.76701 1.21279 1.21717 1.21295 1.21641 0.98091 0.82403 0.98299 0.76727 0.89508 0.89430 0.90649 0.90753 0.88778 0.88623 0.91289 0.90010 0.90821 0.91530 0.92083 0.90247 0.96195 0.96193 0.78233 0.93503 0.89043 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.83 19.25 29.55 0.57 -1.26 16 2 C -0.18 -1.73 13.34 -37.12 -0.50 -2.22 16 3 C -0.01 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.10 -0.90 4.46 -26.73 -0.12 -1.02 16 5 C -0.14 -1.13 4.05 -27.88 -0.11 -1.24 16 6 C 0.51 6.53 7.70 -10.98 -0.08 6.45 16 7 O -0.54 -9.20 15.39 5.56 0.09 -9.11 16 8 N -0.61 -7.45 2.97 -172.76 -0.51 -7.97 16 9 C 0.11 0.97 6.34 -3.71 -0.02 0.95 16 10 C -0.14 -1.48 6.08 -26.61 -0.16 -1.64 16 11 C -0.11 -1.63 5.05 -26.69 -0.13 -1.76 16 12 C -0.11 -1.73 2.38 -90.50 -0.22 -1.95 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.16 3.23 5.65 -4.04 -0.02 3.21 16 15 N -0.73 -18.58 5.32 -59.91 -0.32 -18.90 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.12 1.69 5.72 -3.71 -0.02 1.67 16 25 H 0.22 1.14 7.80 -54.10 -0.42 0.71 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 30 H 0.09 0.54 7.94 -51.93 -0.41 0.13 16 31 H 0.10 0.61 7.69 -51.93 -0.40 0.21 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.38 7.15 -51.93 -0.37 1.01 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 10.18 6.85 -40.82 -0.28 9.90 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 1.47 7.01 -51.92 -0.36 1.11 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -33.87 352.96 -8.13 -42.00 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.17 Total: 5.21 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.24 Total: -6.50 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.11 Total: -54.51 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.87 -8.13 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491146833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.594 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds