Wall clock time and date at job start Tue Mar 31 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47571 * 353.43226 * 3 2 1 5 5 C 1.53002 * 109.47480 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47216 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.62804 * 359.97438 * 8 6 5 10 10 C 1.53198 * 108.77270 * 233.60679 * 9 8 6 11 11 C 1.53038 * 109.31596 * 305.36732 * 10 9 8 12 12 C 1.53046 * 109.53657 * 61.36438 * 11 10 9 13 13 H 1.08995 * 109.49630 * 58.61780 * 12 11 10 14 14 C 1.52996 * 109.49762 * 178.68909 * 12 11 10 15 15 N 1.46504 * 109.46681 * 294.99560 * 14 12 11 16 16 C 1.36943 * 119.99781 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48496 * 109.47031 * 59.99836 * 20 18 16 22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47169 * 300.00118 * 20 18 16 24 24 C 1.46924 * 120.63010 * 179.97438 * 8 6 5 25 25 H 4.44647 * 5.63294 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.47272 * 233.42874 * 3 2 1 27 27 H 1.09000 * 109.47485 * 113.43289 * 3 2 1 28 28 H 1.08996 * 109.47210 * 59.99823 * 4 3 2 29 29 H 1.09009 * 109.46914 * 299.99912 * 4 3 2 30 30 H 1.08996 * 109.47261 * 59.99587 * 5 4 3 31 31 H 1.09000 * 109.46886 * 299.99576 * 5 4 3 32 32 H 1.08994 * 109.58578 * 113.82585 * 9 8 6 33 33 H 1.09001 * 109.59115 * 353.39186 * 9 8 6 34 34 H 1.08997 * 109.49796 * 185.41278 * 10 9 8 35 35 H 1.09003 * 109.49580 * 65.31962 * 10 9 8 36 36 H 1.09000 * 109.46201 * 301.34849 * 11 10 9 37 37 H 1.08993 * 109.45197 * 181.37654 * 11 10 9 38 38 H 1.09006 * 109.47179 * 175.00177 * 14 12 11 39 39 H 1.08997 * 109.47540 * 54.99640 * 14 12 11 40 40 H 0.97000 * 120.00410 * 0.02562 * 15 14 12 41 41 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 42 42 H 1.09011 * 109.58284 * 6.60012 * 24 8 6 43 43 H 1.09002 * 109.58335 * 246.18289 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4321 0.1650 5 6 4.6868 -1.4313 0.1656 6 6 5.1898 -2.8425 0.3288 7 8 4.4021 -3.7586 0.4346 8 7 6.5150 -3.0865 0.3570 9 6 7.4814 -1.9871 0.2294 10 6 8.4539 -2.3151 -0.9079 11 6 9.0890 -3.6838 -0.6521 12 6 7.9982 -4.7570 -0.6246 13 1 7.4622 -4.7554 -1.5737 14 6 8.6374 -6.1291 -0.4014 15 7 9.4834 -6.4661 -1.5489 16 6 10.1618 -7.6555 -1.5736 17 1 10.0734 -8.3447 -0.7468 18 6 10.9680 -7.9722 -2.6583 19 7 11.0762 -7.1320 -3.6655 20 14 11.8994 -9.5912 -2.6883 21 1 10.9353 -10.7183 -2.6166 22 1 12.6817 -9.6889 -3.9468 23 1 12.8213 -9.6535 -1.5258 24 6 7.0207 -4.4567 0.5160 25 1 -1.0497 -0.0005 -0.0001 26 1 3.0091 0.6131 0.8254 27 1 3.0092 0.4095 -0.9429 28 1 2.7937 -2.0445 -0.6603 29 1 2.7936 -1.8409 1.1080 30 1 5.0494 -0.8189 0.9911 31 1 5.0502 -1.0223 -0.7771 32 1 8.0342 -1.8765 1.1623 33 1 6.9534 -1.0608 0.0030 34 1 9.2335 -1.5546 -0.9507 35 1 7.9132 -2.3361 -1.8542 36 1 9.6086 -3.6697 0.3059 37 1 9.7995 -3.9086 -1.4474 38 1 7.8555 -6.8809 -0.2932 39 1 9.2450 -6.1041 0.5031 40 1 9.5631 -5.8469 -2.2913 41 1 11.6392 -7.3535 -4.4236 42 1 6.1885 -5.1599 0.4788 43 1 7.5358 -4.5474 1.4723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491146833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:08 Heat of formation + Delta-G solvation = -14.495752 kcal Electronic energy + Delta-G solvation = -21187.303795 eV Core-core repulsion = 18039.464054 eV Total energy + Delta-G solvation = -3147.839741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27414 -38.96076 -36.62532 -36.46995 -34.44736 -33.19581 -32.91967 -31.68566 -29.06347 -27.14295 -26.28229 -24.68683 -23.22893 -22.90774 -21.19411 -19.88586 -19.22787 -18.95901 -17.93945 -17.01200 -16.93957 -16.52768 -15.85433 -15.69951 -15.39325 -15.31176 -15.13364 -14.76255 -14.50132 -14.14323 -13.78163 -13.60679 -13.51263 -13.29017 -13.25243 -12.78977 -12.75897 -12.39967 -12.20552 -12.05650 -11.93064 -11.91267 -11.71420 -11.54091 -11.36148 -11.13688 -10.94574 -10.93148 -10.73566 -9.61408 -9.01698 -7.96741 -5.25762 1.45852 1.49342 1.55400 1.65997 1.84440 1.94577 2.09073 2.55161 3.36175 3.49787 3.59393 3.79350 3.81428 3.95695 4.08060 4.11308 4.16091 4.31510 4.39962 4.42352 4.55804 4.60464 4.68077 4.70302 4.73497 4.79747 4.82098 4.89409 4.91908 4.97890 5.20274 5.22083 5.23335 5.25879 5.35057 5.41310 5.46498 5.51314 5.56546 6.25326 6.48465 6.74197 7.21117 7.31686 8.06725 8.31314 9.26597 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034860 B = 0.002779 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.009982 B =10074.454098 C =10322.334677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.215 4.215 3 C -0.009 4.009 4 C -0.095 4.095 5 C -0.129 4.129 6 C 0.503 3.497 7 O -0.596 6.596 8 N -0.610 5.610 9 C 0.106 3.894 10 C -0.130 4.130 11 C -0.108 4.108 12 C -0.093 4.093 13 H 0.049 0.951 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.249 4.249 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.126 3.874 25 H 0.238 0.762 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.010 0.990 39 H 0.028 0.972 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.066 0.934 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 20.665 10.039 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.133 4.133 5 C -0.168 4.168 6 C 0.293 3.707 7 O -0.478 6.478 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.168 4.168 11 C -0.146 4.146 12 C -0.112 4.112 13 H 0.068 0.932 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.381 4.381 17 H 0.092 0.908 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.202 1.202 24 C 0.002 3.998 25 H 0.254 0.746 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.046 0.954 40 H 0.207 0.793 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.820 20.040 10.177 25.876 hybrid contribution 0.386 -1.389 -0.720 1.612 sum -12.434 18.651 9.457 24.329 Atomic orbital electron populations 1.25701 0.97141 1.00198 1.01054 1.23884 0.95928 1.01017 1.00720 1.18856 0.83615 0.96841 1.05230 1.21184 0.93982 0.96056 1.02114 1.21761 0.96134 0.91734 1.07163 1.21574 0.81404 0.92891 0.74803 1.90685 1.56128 1.48643 1.52301 1.48285 1.06074 1.08279 1.71590 1.22096 0.90599 0.89386 0.99486 1.21923 0.99435 0.96661 0.98748 1.21466 0.96678 0.94445 1.02000 1.21469 0.96510 0.94972 0.98275 0.93247 1.20734 0.92158 0.93843 0.90221 1.42522 1.54782 1.20452 1.20720 1.19608 1.19767 0.96078 1.02638 0.90826 1.25587 1.02271 1.02144 0.96763 1.69804 1.44415 1.38176 1.09529 0.85183 0.78316 0.79389 0.76691 1.20643 1.21944 1.20151 1.21356 0.96663 0.83926 0.97830 0.74559 0.87106 0.87583 0.93430 0.92783 0.85018 0.85866 0.89314 0.85919 0.88200 0.92428 0.91217 0.93738 0.97170 0.95396 0.79292 0.93920 0.91517 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.66 19.25 74.32 1.43 -2.23 16 2 C -0.22 -3.78 13.34 31.12 0.42 -3.36 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.58 4.46 30.59 0.14 -1.44 16 5 C -0.13 -1.64 4.05 29.85 0.12 -1.52 16 6 C 0.50 12.13 7.70 87.66 0.67 12.80 16 7 O -0.60 -20.67 15.39 -3.03 -0.05 -20.71 16 8 N -0.61 -13.70 2.97 -818.89 -2.43 -16.13 16 9 C 0.11 1.48 6.34 86.37 0.55 2.03 16 10 C -0.13 -2.46 6.08 30.67 0.19 -2.28 16 11 C -0.11 -3.08 5.05 30.62 0.15 -2.93 16 12 C -0.09 -3.07 2.38 -10.71 -0.03 -3.10 16 13 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 14 C 0.16 6.56 5.65 86.38 0.49 7.05 16 15 N -0.74 -38.86 5.32 -343.44 -1.83 -40.68 16 16 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 17 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 20 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.13 3.58 5.72 86.36 0.49 4.07 16 25 H 0.24 2.23 7.80 -4.43 -0.03 2.20 16 26 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 29 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 30 H 0.13 0.77 7.94 -2.39 -0.02 0.75 16 31 H 0.12 0.97 7.69 -2.39 -0.02 0.95 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.12 0.79 5.93 -2.39 -0.01 0.78 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.58 7.15 -2.39 -0.02 1.56 16 38 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.37 20.70 6.85 -92.71 -0.63 20.07 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.07 2.24 7.01 -2.38 -0.02 2.22 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -77.30 352.96 4.44 -72.87 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.34 Total: 23.76 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 6.09 Total: -8.27 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.98 Total: -116.50 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -77.30 4.44 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491146833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.372 kcal (2) G-P(sol) polarization free energy of solvation -77.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds