Wall clock time and date at job start Tue Mar 31 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 C 1.47203 * 109.46919 * 119.99553 * 2 1 3 5 5 C 2.64605 * 109.46904 * 119.99786 * 2 1 3 6 6 C 4.07800 * 109.46992 * 119.99796 * 2 1 3 7 7 O 1.21619 * 119.99818 * 137.50450 * 6 5 4 8 8 N 1.34774 * 120.00394 * 317.51001 * 6 5 4 9 9 C 1.46927 * 120.62778 * 0.02562 * 8 6 5 10 10 C 1.53194 * 108.77374 * 233.59044 * 9 8 6 11 11 C 1.53041 * 109.31312 * 305.36739 * 10 9 8 12 12 C 1.53040 * 109.53986 * 61.36388 * 11 10 9 13 13 H 1.08998 * 109.49616 * 58.61987 * 12 11 10 14 14 N 1.46501 * 109.49654 * 178.68410 * 12 11 10 15 15 C 1.46506 * 120.00038 * 60.00686 * 14 12 11 16 16 C 1.36936 * 120.00014 * 239.99820 * 14 12 11 17 17 H 1.07997 * 119.99787 * 20.40681 * 16 14 12 18 18 C 1.38813 * 119.99913 * 200.40296 * 16 14 12 19 19 N 1.31618 * 120.00306 * 14.98182 * 18 16 14 20 20 Si 1.86804 * 119.99755 * 194.98101 * 18 16 14 21 21 H 1.48499 * 109.47286 * 85.00185 * 20 18 16 22 22 H 1.48500 * 109.46868 * 205.00317 * 20 18 16 23 23 H 1.48504 * 109.47267 * 324.99855 * 20 18 16 24 24 C 1.46932 * 120.63138 * 180.02562 * 8 6 5 25 25 H 1.09005 * 109.46612 * 60.00122 * 1 2 3 26 26 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47432 * 300.00279 * 1 2 3 28 28 H 1.09000 * 109.47865 * 239.99890 * 2 1 3 29 29 H 1.09004 * 109.47213 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47110 * 299.99924 * 3 2 1 31 31 H 1.08999 * 109.47034 * 60.00074 * 3 2 1 32 32 H 1.08994 * 109.58852 * 353.37391 * 9 8 6 33 33 H 1.08997 * 109.58626 * 113.66772 * 9 8 6 34 34 H 1.08996 * 109.49843 * 185.41509 * 10 9 8 35 35 H 1.08998 * 109.49750 * 65.31600 * 10 9 8 36 36 H 1.09007 * 109.45763 * 301.34435 * 11 10 9 37 37 H 1.08996 * 109.46500 * 181.38832 * 11 10 9 38 38 H 1.08993 * 109.47303 * 95.10530 * 15 14 12 39 39 H 1.08999 * 109.46919 * 215.10976 * 15 14 12 40 40 H 1.09001 * 109.46605 * 335.10481 * 15 14 12 41 41 H 0.96998 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.58364 * 6.62186 * 24 8 6 43 43 H 1.09000 * 109.58033 * 246.19637 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4119 -1.2473 2.1606 6 6 2.8892 -1.9223 3.3298 7 8 4.0614 -2.2349 3.4155 8 7 2.0395 -2.2113 4.3352 9 6 0.6206 -1.8407 4.2459 10 6 0.2435 -1.0302 5.4900 11 6 0.6069 -1.8289 6.7438 12 6 2.1162 -2.0809 6.7707 13 1 2.6444 -1.1275 6.7580 14 7 2.4673 -2.8183 7.9869 15 6 1.8840 -4.1388 8.2370 16 6 3.3407 -2.2734 8.8899 17 1 3.5159 -1.2077 8.8961 18 6 4.0007 -3.0907 9.7972 19 7 4.0256 -4.3936 9.6123 20 14 4.8537 -2.3414 11.2806 21 1 3.8697 -2.1590 12.3777 22 1 5.9405 -3.2453 11.7355 23 1 5.4291 -1.0241 10.9077 24 6 2.5146 -2.9030 5.5414 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.4559 -1.2376 3.3532 33 1 0.0099 -2.7422 4.1958 34 1 -0.8281 -0.8310 5.4834 35 1 0.7894 -0.0868 5.4888 36 1 0.0796 -2.7829 6.7321 37 1 0.3171 -1.2650 7.6304 38 1 2.5685 -4.9107 7.8856 39 1 1.7132 -4.2639 9.3063 40 1 0.9364 -4.2239 7.7053 41 1 4.4865 -4.9647 10.2465 42 1 3.5994 -3.0006 5.5031 43 1 2.0584 -3.8912 5.5993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491924538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:17 Heat of formation + Delta-G solvation = 30.784313 kcal Electronic energy + Delta-G solvation = -21811.427066 eV Core-core repulsion = 18665.550816 eV Total energy + Delta-G solvation = -3145.876250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.89462 -37.43693 -36.60608 -35.08778 -32.58743 -31.80671 -31.24525 -28.79895 -27.55419 -26.01825 -25.75696 -23.87665 -23.06680 -21.75583 -20.90289 -18.92853 -17.81080 -16.74905 -16.32147 -15.91342 -15.23045 -14.92144 -14.73864 -14.14035 -14.01995 -13.87324 -13.59576 -13.45786 -12.75881 -12.62694 -12.58092 -12.35514 -12.30599 -11.89739 -11.76665 -11.73489 -11.21199 -11.03051 -10.79685 -10.65329 -10.49078 -10.40598 -10.34562 -10.31128 -10.16173 -9.94587 -9.78728 -9.71491 -8.58660 -8.34940 -6.78199 -5.71294 -3.15494 1.65815 2.28898 3.12096 3.41270 3.47127 3.48556 3.64487 3.97390 4.50758 4.61869 4.76205 4.78733 4.95523 5.12747 5.14750 5.24590 5.32826 5.43331 5.44452 5.49043 5.52953 5.59312 5.63942 5.76646 5.83642 5.86099 5.90796 5.99079 6.12635 6.22322 6.37010 6.49169 6.64551 6.76603 6.91430 6.96688 7.21075 7.38688 7.57872 7.72219 7.83056 8.29185 8.39985 9.23996 9.86939 10.34511 11.33545 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.003702 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.982462 B = 7561.809094 C = 7814.457755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.012 3.988 3 C -0.146 4.146 4 C -0.098 4.098 5 C -0.202 4.202 6 C 0.623 3.377 7 O -0.526 6.526 8 N -0.594 5.594 9 C 0.109 3.891 10 C -0.130 4.130 11 C -0.134 4.134 12 C 0.168 3.832 13 H 0.066 0.934 14 N -0.591 5.591 15 C 0.160 3.840 16 C -0.257 4.257 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.906 3.094 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.098 3.902 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.000 1.000 41 H 0.253 0.747 42 H 0.094 0.906 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 8.317 -17.365 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 C -0.204 4.204 4 C -0.100 4.100 5 C -0.205 4.205 6 C 0.410 3.590 7 O -0.403 6.403 8 N -0.326 5.326 9 C -0.014 4.014 10 C -0.169 4.169 11 C -0.173 4.173 12 C 0.059 3.941 13 H 0.084 0.916 14 N -0.313 5.313 15 C 0.016 3.984 16 C -0.386 4.386 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.550 5.550 20 Si 0.736 3.264 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.025 4.025 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.617 7.976 -17.131 21.675 hybrid contribution 0.489 0.197 0.833 0.986 sum -10.128 8.173 -16.298 20.857 Atomic orbital electron populations 1.21850 0.92947 1.02750 1.02787 1.18445 0.96100 0.95177 0.90929 1.21841 1.01887 0.93896 1.02731 1.22534 0.98216 0.94454 0.94809 1.20897 1.00767 1.02164 0.96705 1.14868 0.85147 0.78676 0.80287 1.90865 1.16221 1.53480 1.79766 1.48166 1.08987 1.57537 1.17946 1.21742 0.81309 0.99396 0.98969 1.21901 1.00898 0.99165 0.94932 1.22100 0.99078 0.99714 0.96424 1.20628 0.92670 0.95173 0.85642 0.91602 1.43971 1.50859 1.18374 1.18050 1.20810 0.92252 0.86376 0.98972 1.19243 1.18205 0.91614 1.09556 0.91230 1.24979 0.98548 0.95550 1.00504 1.70084 1.45911 1.02748 1.36275 0.86249 0.78834 0.78276 0.83050 1.21482 1.21744 1.20534 1.22665 1.01961 0.95644 0.82203 0.91329 0.91994 0.91899 0.88367 0.91923 0.91298 0.91933 0.90439 0.91275 0.91127 0.91701 0.92152 0.91539 0.95182 0.93760 0.98124 0.93694 0.88724 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.15 37.16 0.34 -0.53 16 2 C 0.01 0.09 3.30 -93.41 -0.31 -0.22 16 3 C -0.15 -0.99 9.15 37.16 0.34 -0.65 16 4 C -0.10 -1.16 12.50 -37.12 -0.46 -1.63 16 5 C -0.20 -3.05 11.57 -38.84 -0.45 -3.50 16 6 C 0.62 11.42 7.55 -14.34 -0.11 11.31 16 7 O -0.53 -11.76 16.50 5.26 0.09 -11.68 16 8 N -0.59 -10.04 2.97 -175.66 -0.52 -10.56 16 9 C 0.11 1.40 6.33 -3.71 -0.02 1.38 16 10 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 11 C -0.13 -2.20 5.13 -26.69 -0.14 -2.34 16 12 C 0.17 3.46 2.74 -67.83 -0.19 3.28 16 13 H 0.07 1.44 7.85 -51.93 -0.41 1.03 16 14 N -0.59 -14.73 2.82 -173.37 -0.49 -15.21 16 15 C 0.16 3.89 7.91 59.85 0.47 4.36 16 16 C -0.26 -7.12 9.61 -15.06 -0.14 -7.26 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 19 N -0.91 -26.59 10.67 55.49 0.59 -26.00 16 20 Si 0.91 22.16 29.58 -169.99 -5.03 17.14 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.10 1.95 5.79 -3.72 -0.02 1.93 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.87 6.32 -51.93 -0.33 0.54 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.98 6.72 -51.93 -0.35 0.64 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 39 H 0.04 1.16 7.22 -51.93 -0.37 0.78 16 40 H 0.00 0.01 6.46 -51.93 -0.34 -0.33 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.09 2.20 7.00 -51.93 -0.36 1.83 16 43 H 0.07 1.29 7.51 -51.93 -0.39 0.90 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -32.31 347.88 -8.18 -40.50 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -7.13 Total: -3.71 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.94 Total: 4.28 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.42 Total: -51.77 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.31 -8.18 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491924538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.282 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds