Wall clock time and date at job start Tue Mar 31 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 C 1.47203 * 109.46919 * 119.99553 * 2 1 3 5 5 C 2.64605 * 109.46904 * 119.99786 * 2 1 3 6 6 C 4.07800 * 109.46992 * 119.99796 * 2 1 3 7 7 O 1.21619 * 119.99818 * 137.50450 * 6 5 4 8 8 N 1.34774 * 120.00394 * 317.51001 * 6 5 4 9 9 C 1.46927 * 120.62778 * 0.02562 * 8 6 5 10 10 C 1.53194 * 108.77374 * 233.59044 * 9 8 6 11 11 C 1.53041 * 109.31312 * 305.36739 * 10 9 8 12 12 C 1.53040 * 109.53986 * 61.36388 * 11 10 9 13 13 H 1.08998 * 109.49616 * 58.61987 * 12 11 10 14 14 N 1.46501 * 109.49654 * 178.68410 * 12 11 10 15 15 C 1.46506 * 120.00038 * 60.00686 * 14 12 11 16 16 C 1.36936 * 120.00014 * 239.99820 * 14 12 11 17 17 H 1.07997 * 119.99787 * 20.40681 * 16 14 12 18 18 C 1.38813 * 119.99913 * 200.40296 * 16 14 12 19 19 N 1.31618 * 120.00306 * 14.98182 * 18 16 14 20 20 Si 1.86804 * 119.99755 * 194.98101 * 18 16 14 21 21 H 1.48499 * 109.47286 * 85.00185 * 20 18 16 22 22 H 1.48500 * 109.46868 * 205.00317 * 20 18 16 23 23 H 1.48504 * 109.47267 * 324.99855 * 20 18 16 24 24 C 1.46932 * 120.63138 * 180.02562 * 8 6 5 25 25 H 1.09005 * 109.46612 * 60.00122 * 1 2 3 26 26 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47432 * 300.00279 * 1 2 3 28 28 H 1.09000 * 109.47865 * 239.99890 * 2 1 3 29 29 H 1.09004 * 109.47213 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47110 * 299.99924 * 3 2 1 31 31 H 1.08999 * 109.47034 * 60.00074 * 3 2 1 32 32 H 1.08994 * 109.58852 * 353.37391 * 9 8 6 33 33 H 1.08997 * 109.58626 * 113.66772 * 9 8 6 34 34 H 1.08996 * 109.49843 * 185.41509 * 10 9 8 35 35 H 1.08998 * 109.49750 * 65.31600 * 10 9 8 36 36 H 1.09007 * 109.45763 * 301.34435 * 11 10 9 37 37 H 1.08996 * 109.46500 * 181.38832 * 11 10 9 38 38 H 1.08993 * 109.47303 * 95.10530 * 15 14 12 39 39 H 1.08999 * 109.46919 * 215.10976 * 15 14 12 40 40 H 1.09001 * 109.46605 * 335.10481 * 15 14 12 41 41 H 0.96998 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.58364 * 6.62186 * 24 8 6 43 43 H 1.09000 * 109.58033 * 246.19637 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4119 -1.2473 2.1606 6 6 2.8892 -1.9223 3.3298 7 8 4.0614 -2.2349 3.4155 8 7 2.0395 -2.2113 4.3352 9 6 0.6206 -1.8407 4.2459 10 6 0.2435 -1.0302 5.4900 11 6 0.6069 -1.8289 6.7438 12 6 2.1162 -2.0809 6.7707 13 1 2.6444 -1.1275 6.7580 14 7 2.4673 -2.8183 7.9869 15 6 1.8840 -4.1388 8.2370 16 6 3.3407 -2.2734 8.8899 17 1 3.5159 -1.2077 8.8961 18 6 4.0007 -3.0907 9.7972 19 7 4.0256 -4.3936 9.6123 20 14 4.8537 -2.3414 11.2806 21 1 3.8697 -2.1590 12.3777 22 1 5.9405 -3.2453 11.7355 23 1 5.4291 -1.0241 10.9077 24 6 2.5146 -2.9030 5.5414 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.4559 -1.2376 3.3532 33 1 0.0099 -2.7422 4.1958 34 1 -0.8281 -0.8310 5.4834 35 1 0.7894 -0.0868 5.4888 36 1 0.0796 -2.7829 6.7321 37 1 0.3171 -1.2650 7.6304 38 1 2.5685 -4.9107 7.8856 39 1 1.7132 -4.2639 9.3063 40 1 0.9364 -4.2239 7.7053 41 1 4.4865 -4.9647 10.2465 42 1 3.5994 -3.0006 5.5031 43 1 2.0584 -3.8912 5.5993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491924538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:17 Heat of formation + Delta-G solvation = 11.559951 kcal Electronic energy + Delta-G solvation = -21812.260697 eV Core-core repulsion = 18665.550816 eV Total energy + Delta-G solvation = -3146.709881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32092 -38.99960 -37.33819 -36.82877 -34.15477 -32.90315 -32.89656 -30.49244 -28.07193 -28.01438 -27.08899 -25.47110 -24.20869 -23.12888 -22.11945 -20.45821 -19.17910 -18.69831 -17.61809 -17.01622 -16.86566 -16.38670 -15.81481 -15.51607 -15.33445 -15.31129 -15.02408 -14.43366 -14.39309 -14.09381 -13.92314 -13.60562 -13.07319 -12.98762 -12.91276 -12.83957 -12.50903 -12.40407 -12.31583 -12.24575 -12.16495 -12.11440 -11.83864 -11.72216 -11.55610 -11.43858 -11.30186 -11.05856 -10.65836 -9.84282 -8.82414 -7.85646 -5.32436 0.45645 1.20743 1.44672 1.45832 1.54341 1.85897 2.41168 2.49175 2.95718 3.26979 3.56803 3.85995 3.97296 4.05997 4.06906 4.09802 4.20547 4.23865 4.31521 4.48061 4.54017 4.63594 4.74046 4.82641 4.83885 4.89948 4.95963 5.00106 5.00973 5.09970 5.15557 5.25409 5.35719 5.37316 5.38111 5.41134 5.52263 5.60439 5.70822 6.17230 6.23020 6.29093 6.89972 7.12038 7.83582 8.25362 9.17067 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.003702 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.982462 B = 7561.809094 C = 7814.457755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.005 3.995 3 C -0.146 4.146 4 C -0.039 4.039 5 C -0.265 4.265 6 C 0.620 3.380 7 O -0.585 6.585 8 N -0.591 5.591 9 C 0.105 3.895 10 C -0.120 4.120 11 C -0.122 4.122 12 C 0.167 3.833 13 H 0.045 0.955 14 N -0.607 5.607 15 C 0.178 3.822 16 C -0.268 4.268 17 H 0.068 0.932 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.273 1.273 24 C 0.113 3.887 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.061 0.939 38 H -0.001 1.001 39 H 0.019 0.981 40 H 0.039 0.961 41 H 0.249 0.751 42 H 0.048 0.952 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 10.295 -19.498 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 C -0.203 4.203 4 C -0.041 4.041 5 C -0.268 4.268 6 C 0.410 3.590 7 O -0.467 6.467 8 N -0.322 5.322 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.161 4.161 12 C 0.059 3.941 13 H 0.063 0.937 14 N -0.330 5.330 15 C 0.033 3.967 16 C -0.398 4.398 17 H 0.086 0.914 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.798 3.202 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.198 1.198 24 C -0.012 4.012 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.018 0.982 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.554 9.994 -19.293 25.609 hybrid contribution 1.332 -0.339 1.330 1.913 sum -12.222 9.655 -17.963 23.775 Atomic orbital electron populations 1.21868 0.90965 1.03187 1.04049 1.18901 0.97625 0.95408 0.89316 1.21871 1.01251 0.93221 1.03971 1.23479 0.95230 0.91537 0.93893 1.20296 1.04036 1.04934 0.97546 1.15261 0.84455 0.78016 0.81266 1.90818 1.18723 1.56043 1.81133 1.48176 1.10783 1.56743 1.16489 1.22084 0.78605 1.00814 1.00089 1.21875 1.03405 0.98002 0.92543 1.21934 0.95011 1.00774 0.98423 1.20780 0.95608 0.93522 0.84223 0.93712 1.44186 1.50697 1.18741 1.19346 1.20530 0.93107 0.85431 0.97640 1.19556 1.18278 0.91752 1.10257 0.91438 1.25756 0.99768 0.96017 1.03180 1.70251 1.47108 1.03861 1.37036 0.85241 0.77659 0.77492 0.79793 1.20641 1.22184 1.19793 1.22164 0.99286 0.96032 0.83684 0.88861 0.91993 0.91968 0.86260 0.93038 0.88473 0.92371 0.88072 0.89179 0.86872 0.92174 0.91344 0.91982 0.98232 0.96265 0.94287 0.94198 0.93288 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.15 71.98 0.66 -0.41 16 2 C 0.01 0.06 3.30 -12.60 -0.04 0.02 16 3 C -0.15 -1.46 9.15 71.98 0.66 -0.80 16 4 C -0.04 -0.84 12.50 31.13 0.39 -0.45 16 5 C -0.27 -7.82 11.57 30.01 0.35 -7.48 16 6 C 0.62 23.52 7.55 85.49 0.65 24.17 16 7 O -0.58 -28.05 16.50 -4.09 -0.07 -28.12 16 8 N -0.59 -20.10 2.97 -827.93 -2.46 -22.56 16 9 C 0.11 2.42 6.33 86.36 0.55 2.96 16 10 C -0.12 -2.69 6.08 30.67 0.19 -2.50 16 11 C -0.12 -3.81 5.13 30.62 0.16 -3.65 16 12 C 0.17 7.00 2.74 45.06 0.12 7.12 16 13 H 0.04 2.03 7.85 -2.39 -0.02 2.02 16 14 N -0.61 -31.15 2.82 -702.40 -1.98 -33.13 16 15 C 0.18 8.83 7.91 127.77 1.01 9.84 16 16 C -0.27 -15.33 9.61 84.03 0.81 -14.52 16 17 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 18 C -0.05 -3.01 5.06 84.86 0.43 -2.58 16 19 N -0.94 -57.04 10.67 21.65 0.23 -56.81 16 20 Si 0.97 46.64 29.58 68.60 2.03 48.67 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.11 4.67 5.79 86.35 0.50 5.17 16 25 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.92 6.32 -2.39 -0.02 1.90 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 2.04 6.72 -2.38 -0.02 2.02 16 37 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.00 -0.04 7.40 -2.39 -0.02 -0.05 16 39 H 0.02 1.01 7.22 -2.39 -0.02 1.00 16 40 H 0.04 1.60 6.46 -2.39 -0.02 1.58 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 43 H 0.07 2.76 7.51 -2.39 -0.02 2.74 16 Total: -1.00 -75.90 347.88 5.15 -70.75 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.98 Total: 4.31 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.42 Total: 16.90 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.21 Total: -112.51 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.07 Total: -28.12 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.90 5.15 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491924538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.312 kcal (2) G-P(sol) polarization free energy of solvation -75.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds