Wall clock time and date at job start Tue Mar 31 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47204 * 2 1 4 4 C 1.50699 * 120.00148 * 275.00009 * 3 2 1 5 5 C 1.32992 * 119.99813 * 95.00166 * 3 2 1 6 6 C 1.47104 * 120.00100 * 172.72554 * 5 3 2 7 7 O 1.21618 * 119.99746 * 353.24618 * 6 5 3 8 8 N 1.34774 * 120.00096 * 173.24811 * 6 5 3 9 9 C 1.47164 * 120.70564 * 184.90254 * 8 6 5 10 10 C 1.53894 * 108.03226 * 132.73457 * 9 8 6 11 11 H 1.08995 * 112.09565 * 181.90216 * 10 9 8 12 12 C 1.54545 * 108.36777 * 306.25162 * 10 9 8 13 13 C 1.54833 * 104.74660 * 89.16780 * 12 10 9 14 14 C 1.54551 * 104.74142 * 0.02562 * 13 12 10 15 15 H 1.09001 * 112.68089 * 146.80834 * 14 13 12 16 16 C 1.47156 * 120.71007 * 4.87716 * 8 6 5 17 17 N 1.48309 * 104.35837 * 24.82413 * 14 13 12 18 18 C 1.36929 * 128.07812 * 139.08552 * 17 14 13 19 19 H 1.07999 * 119.99888 * 344.97948 * 18 17 14 20 20 C 1.38814 * 120.00255 * 164.97710 * 18 17 14 21 21 N 1.31620 * 119.99697 * 351.04215 * 20 18 17 22 22 Si 1.86803 * 120.00097 * 171.03807 * 20 18 17 23 23 H 1.48497 * 109.46923 * 270.00287 * 22 20 18 24 24 H 1.48504 * 109.46809 * 30.00381 * 22 20 18 25 25 H 1.48500 * 109.47138 * 150.00250 * 22 20 18 26 26 H 1.09004 * 109.46738 * 300.00135 * 1 2 3 27 27 H 1.08997 * 109.46779 * 59.99547 * 1 2 3 28 28 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46738 * 239.99865 * 2 1 3 30 30 H 1.09007 * 109.46691 * 120.00464 * 2 1 3 31 31 H 1.09004 * 109.46651 * 264.34010 * 4 3 2 32 32 H 1.08999 * 109.47143 * 24.33159 * 4 3 2 33 33 H 1.08997 * 109.47299 * 144.33496 * 4 3 2 34 34 H 1.07999 * 120.00065 * 352.72467 * 5 3 2 35 35 H 1.08995 * 109.75442 * 13.10321 * 9 8 6 36 36 H 1.09000 * 109.78987 * 252.39021 * 9 8 6 37 37 H 1.08998 * 110.36176 * 208.14216 * 12 10 9 38 38 H 1.09007 * 110.36148 * 330.45068 * 12 10 9 39 39 H 1.08995 * 110.30615 * 241.24706 * 13 12 10 40 40 H 1.08998 * 110.60850 * 118.91020 * 13 12 10 41 41 H 1.09003 * 109.75185 * 346.89956 * 16 8 6 42 42 H 1.09001 * 109.75103 * 107.58842 * 16 8 6 43 43 H 0.97003 * 119.99390 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1764 2.1691 -1.3001 5 6 2.3487 2.0142 1.1474 6 6 2.9881 3.3390 1.1385 7 8 3.3391 3.8377 0.0863 8 7 3.1849 4.0001 2.2964 9 6 3.7241 5.3694 2.2976 10 6 2.8524 6.2237 3.2350 11 1 3.1752 7.2644 3.2598 12 6 1.3781 6.0803 2.7943 13 6 0.8476 4.8588 3.5843 14 6 2.0524 4.3821 4.4269 15 1 1.7540 3.9669 5.3895 16 6 2.8648 3.3682 3.5863 17 7 2.8984 5.5910 4.5760 18 6 3.5701 6.0196 5.6895 19 1 3.3331 5.6023 6.6571 20 6 4.5557 6.9904 5.5749 21 7 4.9685 7.3717 4.3847 22 14 5.2959 7.7557 7.1098 23 1 4.5083 8.9545 7.4943 24 1 5.2673 6.7681 8.2184 25 1 6.7005 8.1529 6.8368 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2050 2.0912 -1.6521 32 1 1.5046 1.7392 -2.0431 33 1 1.9237 3.2181 -1.1455 34 1 2.1362 1.5235 2.0857 35 1 3.6906 5.7794 1.2883 36 1 4.7529 5.3606 2.6576 37 1 0.8156 6.9770 3.0542 38 1 1.3193 5.8920 1.7222 39 1 0.5297 4.0738 2.8983 40 1 0.0227 5.1510 4.2340 41 1 2.2698 2.4704 3.4190 42 1 3.7860 3.1078 4.1075 43 1 5.6570 8.0503 4.3046 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493914074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:11 Heat of formation + Delta-G solvation = 12.302544 kcal Electronic energy + Delta-G solvation = -23004.680939 eV Core-core repulsion = 19858.003259 eV Total energy + Delta-G solvation = -3146.677680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.97411 -38.09203 -35.91441 -33.70006 -32.33148 -31.11965 -30.34502 -29.25050 -27.77198 -25.91494 -24.30836 -23.80944 -23.28060 -20.39626 -19.67497 -18.86275 -17.70579 -17.10631 -16.15494 -15.35795 -15.12062 -14.71018 -14.34187 -14.14912 -13.96463 -13.64790 -13.04416 -12.94974 -12.78284 -12.66878 -12.50471 -12.13564 -11.86787 -11.66505 -11.53599 -11.45889 -11.31823 -10.99373 -10.94315 -10.84262 -10.73967 -10.30141 -10.01180 -9.82004 -9.62762 -9.53444 -9.01217 -8.96103 -8.70863 -7.91372 -6.81157 -5.82806 -3.18534 1.63865 3.35989 3.41608 3.43565 3.74269 3.80094 4.42043 4.70909 4.82747 5.09057 5.17285 5.22287 5.33173 5.35128 5.49741 5.63312 5.67284 5.70012 5.77651 5.78637 5.82176 5.89577 5.96403 5.98387 6.06618 6.23751 6.25062 6.37440 6.43930 6.55061 6.66453 6.67332 6.70191 6.79459 6.84408 6.92417 7.08872 7.34552 7.52663 7.72485 8.15189 8.22003 8.84047 9.06519 9.68662 10.45590 11.29769 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031811 B = 0.004707 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.993560 B = 5947.142801 C = 6172.861464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.047 4.047 4 C -0.118 4.118 5 C -0.221 4.221 6 C 0.535 3.465 7 O -0.560 6.560 8 N -0.588 5.588 9 C 0.113 3.887 10 C 0.167 3.833 11 H 0.118 0.882 12 C -0.135 4.135 13 C -0.121 4.121 14 C 0.133 3.867 15 H 0.077 0.923 16 C 0.094 3.906 17 N -0.585 5.585 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.913 5.913 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.291 1.291 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 -11.789 -6.173 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.049 4.049 4 C -0.174 4.174 5 C -0.241 4.241 6 C 0.326 3.674 7 O -0.442 6.442 8 N -0.319 5.319 9 C -0.010 4.010 10 C 0.059 3.941 11 H 0.136 0.864 12 C -0.174 4.174 13 C -0.160 4.160 14 C 0.024 3.976 15 H 0.095 0.905 16 C -0.032 4.032 17 N -0.306 5.306 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.559 5.559 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.217 1.217 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.904 -11.320 -6.562 15.286 hybrid contribution 0.518 0.271 0.956 1.121 sum -7.386 -11.049 -5.605 14.424 Atomic orbital electron populations 1.21724 0.94516 1.01698 1.02462 1.20720 0.96465 0.92993 1.02944 1.22434 0.92256 0.94635 0.95543 1.21058 1.01833 1.01317 0.93160 1.22607 1.05910 0.97126 0.98487 1.18472 0.79844 0.85455 0.83617 1.90692 1.53207 1.69764 1.30548 1.48105 1.62139 1.16370 1.05266 1.22395 0.99181 0.79584 0.99799 1.21913 0.89511 0.98862 0.83781 0.86409 1.22706 0.99401 0.97092 0.98220 1.22526 0.97672 0.97700 0.98105 1.22136 0.90880 0.88956 0.95602 0.90501 1.22734 0.99994 0.95721 0.84727 1.45197 1.55160 1.21612 1.08621 1.19004 1.12433 1.18742 0.85339 0.90570 1.24839 0.97494 1.00901 0.96785 1.69840 1.31783 1.33519 1.20742 0.86124 0.78242 0.79310 0.82058 1.21593 1.20686 1.21736 0.92324 0.92450 0.92410 0.90697 0.90940 0.90721 0.93343 0.89311 0.85801 0.91482 0.90435 0.92851 0.92975 0.92936 0.92707 0.91510 0.91813 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 37.16 0.37 -0.86 16 2 C -0.09 -0.89 6.08 -27.88 -0.17 -1.06 16 3 C -0.05 -0.60 5.36 -101.17 -0.54 -1.14 16 4 C -0.12 -1.59 8.47 36.01 0.30 -1.28 16 5 C -0.22 -3.26 8.89 -37.81 -0.34 -3.59 16 6 C 0.54 10.09 7.48 -12.66 -0.09 10.00 16 7 O -0.56 -11.88 12.80 5.26 0.07 -11.81 16 8 N -0.59 -11.59 2.28 -172.39 -0.39 -11.98 16 9 C 0.11 2.56 5.81 -3.21 -0.02 2.54 16 10 C 0.17 3.83 3.09 -65.64 -0.20 3.63 16 11 H 0.12 3.08 6.32 -51.93 -0.33 2.75 16 12 C -0.13 -2.65 6.23 -24.95 -0.16 -2.81 16 13 C -0.12 -2.13 6.24 -24.95 -0.16 -2.29 16 14 C 0.13 2.56 4.32 -65.20 -0.28 2.28 16 15 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.09 1.67 5.88 -2.77 -0.02 1.66 16 17 N -0.58 -13.91 2.80 -152.07 -0.43 -14.33 16 18 C -0.23 -5.94 10.37 -15.06 -0.16 -6.10 16 19 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 20 C 0.00 -0.08 5.42 -17.43 -0.09 -0.17 16 21 N -0.91 -25.28 10.36 55.49 0.57 -24.71 16 22 Si 0.91 21.29 29.56 -169.99 -5.03 16.26 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 31 H 0.07 1.06 8.02 -51.93 -0.42 0.65 16 32 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.09 1.43 6.18 -51.93 -0.32 1.11 16 34 H 0.12 1.59 5.96 -52.49 -0.31 1.28 16 35 H 0.07 1.53 7.15 -51.93 -0.37 1.16 16 36 H 0.08 2.00 7.80 -51.93 -0.41 1.59 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.01 7.86 -51.92 -0.41 0.60 16 39 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.97 5.44 -51.93 -0.28 0.68 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -29.01 332.70 -8.76 -37.77 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.02 Total: 2.99 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.55 Total: 0.80 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.24 Total: -51.02 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.01 -8.76 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493914074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.072 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds