Wall clock time and date at job start Tue Mar 31 2020 01:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47204 * 2 1 4 4 C 1.50699 * 120.00148 * 275.00009 * 3 2 1 5 5 C 1.32992 * 119.99813 * 95.00166 * 3 2 1 6 6 C 1.47104 * 120.00100 * 172.72554 * 5 3 2 7 7 O 1.21618 * 119.99746 * 353.24618 * 6 5 3 8 8 N 1.34774 * 120.00096 * 173.24811 * 6 5 3 9 9 C 1.47164 * 120.70564 * 184.90254 * 8 6 5 10 10 C 1.53894 * 108.03226 * 132.73457 * 9 8 6 11 11 H 1.08995 * 112.09565 * 181.90216 * 10 9 8 12 12 C 1.54545 * 108.36777 * 306.25162 * 10 9 8 13 13 C 1.54833 * 104.74660 * 89.16780 * 12 10 9 14 14 C 1.54551 * 104.74142 * 0.02562 * 13 12 10 15 15 H 1.09001 * 112.68089 * 146.80834 * 14 13 12 16 16 C 1.47156 * 120.71007 * 4.87716 * 8 6 5 17 17 N 1.48309 * 104.35837 * 24.82413 * 14 13 12 18 18 C 1.36929 * 128.07812 * 139.08552 * 17 14 13 19 19 H 1.07999 * 119.99888 * 344.97948 * 18 17 14 20 20 C 1.38814 * 120.00255 * 164.97710 * 18 17 14 21 21 N 1.31620 * 119.99697 * 351.04215 * 20 18 17 22 22 Si 1.86803 * 120.00097 * 171.03807 * 20 18 17 23 23 H 1.48497 * 109.46923 * 270.00287 * 22 20 18 24 24 H 1.48504 * 109.46809 * 30.00381 * 22 20 18 25 25 H 1.48500 * 109.47138 * 150.00250 * 22 20 18 26 26 H 1.09004 * 109.46738 * 300.00135 * 1 2 3 27 27 H 1.08997 * 109.46779 * 59.99547 * 1 2 3 28 28 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46738 * 239.99865 * 2 1 3 30 30 H 1.09007 * 109.46691 * 120.00464 * 2 1 3 31 31 H 1.09004 * 109.46651 * 264.34010 * 4 3 2 32 32 H 1.08999 * 109.47143 * 24.33159 * 4 3 2 33 33 H 1.08997 * 109.47299 * 144.33496 * 4 3 2 34 34 H 1.07999 * 120.00065 * 352.72467 * 5 3 2 35 35 H 1.08995 * 109.75442 * 13.10321 * 9 8 6 36 36 H 1.09000 * 109.78987 * 252.39021 * 9 8 6 37 37 H 1.08998 * 110.36176 * 208.14216 * 12 10 9 38 38 H 1.09007 * 110.36148 * 330.45068 * 12 10 9 39 39 H 1.08995 * 110.30615 * 241.24706 * 13 12 10 40 40 H 1.08998 * 110.60850 * 118.91020 * 13 12 10 41 41 H 1.09003 * 109.75185 * 346.89956 * 16 8 6 42 42 H 1.09001 * 109.75103 * 107.58842 * 16 8 6 43 43 H 0.97003 * 119.99390 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1764 2.1691 -1.3001 5 6 2.3487 2.0142 1.1474 6 6 2.9881 3.3390 1.1385 7 8 3.3391 3.8377 0.0863 8 7 3.1849 4.0001 2.2964 9 6 3.7241 5.3694 2.2976 10 6 2.8524 6.2237 3.2350 11 1 3.1752 7.2644 3.2598 12 6 1.3781 6.0803 2.7943 13 6 0.8476 4.8588 3.5843 14 6 2.0524 4.3821 4.4269 15 1 1.7540 3.9669 5.3895 16 6 2.8648 3.3682 3.5863 17 7 2.8984 5.5910 4.5760 18 6 3.5701 6.0196 5.6895 19 1 3.3331 5.6023 6.6571 20 6 4.5557 6.9904 5.5749 21 7 4.9685 7.3717 4.3847 22 14 5.2959 7.7557 7.1098 23 1 4.5083 8.9545 7.4943 24 1 5.2673 6.7681 8.2184 25 1 6.7005 8.1529 6.8368 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2050 2.0912 -1.6521 32 1 1.5046 1.7392 -2.0431 33 1 1.9237 3.2181 -1.1455 34 1 2.1362 1.5235 2.0857 35 1 3.6906 5.7794 1.2883 36 1 4.7529 5.3606 2.6576 37 1 0.8156 6.9770 3.0542 38 1 1.3193 5.8920 1.7222 39 1 0.5297 4.0738 2.8983 40 1 0.0227 5.1510 4.2340 41 1 2.2698 2.4704 3.4190 42 1 3.7860 3.1078 4.1075 43 1 5.6570 8.0503 4.3046 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493914074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:10 Heat of formation + Delta-G solvation = -2.934850 kcal Electronic energy + Delta-G solvation = -23005.341682 eV Core-core repulsion = 19858.003259 eV Total energy + Delta-G solvation = -3147.338423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52362 -39.59737 -36.98519 -35.40522 -34.14362 -32.44833 -31.56598 -31.02916 -29.04094 -27.48528 -25.66341 -25.48841 -24.51402 -21.80169 -21.25318 -20.53348 -19.08141 -18.53082 -17.83607 -16.90516 -16.63065 -16.32454 -15.78170 -15.29887 -15.22937 -15.04460 -14.64610 -14.48648 -14.17706 -13.99734 -13.54764 -13.45771 -13.29083 -13.15936 -12.94967 -12.91340 -12.73998 -12.64980 -12.33189 -12.18508 -11.96761 -11.78490 -11.68564 -11.47071 -11.42444 -11.13934 -10.76167 -10.39787 -10.08986 -9.56113 -8.67702 -7.84110 -5.20226 0.48289 1.48968 1.49828 1.57903 2.24268 2.39578 2.51925 3.35246 3.49723 3.67303 3.91894 4.07876 4.12639 4.16665 4.25386 4.33013 4.37433 4.46648 4.50239 4.66104 4.69885 4.72144 4.82460 4.87497 4.88412 4.99106 5.06281 5.08781 5.10127 5.14189 5.15940 5.21415 5.34657 5.40461 5.43919 5.54362 5.58476 5.63322 5.70799 5.88679 6.23669 6.72836 7.06212 7.35002 7.73758 8.52841 9.27242 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031811 B = 0.004707 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.993560 B = 5947.142801 C = 6172.861464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.022 4.022 4 C -0.120 4.120 5 C -0.241 4.241 6 C 0.530 3.470 7 O -0.593 6.593 8 N -0.594 5.594 9 C 0.131 3.869 10 C 0.165 3.835 11 H 0.078 0.922 12 C -0.127 4.127 13 C -0.108 4.108 14 C 0.127 3.873 15 H 0.096 0.904 16 C 0.099 3.901 17 N -0.605 5.605 18 C -0.231 4.231 19 H 0.084 0.916 20 C -0.059 4.059 21 N -0.941 5.941 22 Si 0.972 3.028 23 H -0.290 1.290 24 H -0.268 1.268 25 H -0.302 1.302 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.150 0.850 35 H 0.053 0.947 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 -14.894 -5.825 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.024 4.024 4 C -0.176 4.176 5 C -0.262 4.262 6 C 0.323 3.677 7 O -0.478 6.478 8 N -0.324 5.324 9 C 0.006 3.994 10 C 0.058 3.942 11 H 0.095 0.905 12 C -0.166 4.166 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.114 0.886 16 C -0.025 4.025 17 N -0.327 5.327 18 C -0.360 4.360 19 H 0.101 0.899 20 C -0.253 4.253 21 N -0.588 5.588 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.193 1.193 25 H -0.229 1.229 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.064 0.936 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.270 -14.472 -6.201 18.798 hybrid contribution 1.225 1.179 0.720 1.847 sum -9.045 -13.293 -5.481 16.987 Atomic orbital electron populations 1.21725 0.93299 1.02966 1.02267 1.20818 0.97287 0.90262 1.04476 1.22825 0.89272 0.96017 0.94335 1.21031 1.01858 1.00061 0.94666 1.22500 1.08078 0.95167 1.00417 1.19237 0.79229 0.86650 0.82571 1.90683 1.54549 1.70902 1.31617 1.48103 1.62478 1.15214 1.06611 1.21864 0.97062 0.81964 0.98519 1.21714 0.91606 0.96783 0.84142 0.90458 1.22578 0.96898 0.98587 0.98525 1.22455 0.97140 0.96989 0.98077 1.22435 0.90766 0.87690 0.97130 0.88636 1.22756 0.99636 0.96760 0.83383 1.45389 1.55531 1.23718 1.08063 1.19356 1.11922 1.18190 0.86486 0.89855 1.25567 0.98606 1.02023 0.99059 1.70053 1.32313 1.34021 1.22457 0.85166 0.76636 0.78494 0.79505 1.21723 1.19303 1.22863 0.92635 0.92618 0.90463 0.89156 0.89531 0.91782 0.90341 0.92198 0.83227 0.92887 0.94756 0.92688 0.92966 0.90585 0.91073 0.86910 0.93640 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.90 71.98 0.71 -1.06 16 2 C -0.09 -1.31 6.08 29.85 0.18 -1.13 16 3 C -0.02 -0.51 5.36 -17.62 -0.09 -0.60 16 4 C -0.12 -3.03 8.47 71.24 0.60 -2.43 16 5 C -0.24 -6.44 8.89 23.43 0.21 -6.23 16 6 C 0.53 19.67 7.48 86.57 0.65 20.32 16 7 O -0.59 -25.71 12.80 -4.09 -0.05 -25.76 16 8 N -0.59 -23.35 2.28 -817.56 -1.87 -25.21 16 9 C 0.13 6.21 5.81 86.55 0.50 6.72 16 10 C 0.17 7.88 3.09 45.46 0.14 8.02 16 11 H 0.08 4.31 6.32 -2.39 -0.02 4.29 16 12 C -0.13 -4.94 6.23 31.75 0.20 -4.74 16 13 C -0.11 -3.50 6.24 31.75 0.20 -3.30 16 14 C 0.13 4.63 4.32 45.77 0.20 4.83 16 15 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 16 C 0.10 3.35 5.88 86.85 0.51 3.86 16 17 N -0.61 -28.96 2.80 -635.03 -1.78 -30.74 16 18 C -0.23 -12.18 10.37 84.04 0.87 -11.31 16 19 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 20 C -0.06 -3.21 5.42 84.86 0.46 -2.75 16 21 N -0.94 -54.87 10.36 21.65 0.22 -54.65 16 22 Si 0.97 44.77 29.56 68.60 2.03 46.80 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.08 8.04 -2.38 -0.02 1.06 16 31 H 0.06 1.78 8.02 -2.38 -0.02 1.76 16 32 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 33 H 0.06 1.90 6.18 -2.39 -0.01 1.89 16 34 H 0.15 3.15 5.96 -2.91 -0.02 3.13 16 35 H 0.05 2.60 7.15 -2.39 -0.02 2.58 16 36 H 0.03 1.90 7.80 -2.39 -0.02 1.88 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.01 7.86 -2.38 -0.02 1.99 16 39 H 0.08 2.15 7.87 -2.39 -0.02 2.13 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.11 2.79 5.44 -2.39 -0.01 2.77 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -66.69 332.70 4.88 -61.81 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.98 Total: 17.56 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.34 Total: 10.19 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.42 Total: -110.60 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.69 4.88 -61.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493914074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.877 kcal (2) G-P(sol) polarization free energy of solvation -66.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds