Wall clock time and date at job start Tue Mar 31 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47482 * 2 1 4 4 C 1.47207 * 109.46783 * 119.99783 * 2 1 3 5 5 C 2.64607 * 109.46889 * 119.99863 * 2 1 3 6 6 C 4.07806 * 109.46833 * 119.99755 * 2 1 3 7 7 O 1.21612 * 119.99534 * 172.65009 * 6 5 4 8 8 N 1.34776 * 119.99901 * 352.64634 * 6 5 4 9 9 C 1.46508 * 119.99573 * 174.90459 * 8 6 5 10 10 C 1.53005 * 110.01420 * 65.18236 * 9 8 6 11 11 N 1.46500 * 109.46936 * 55.19281 * 10 9 8 12 12 C 1.36935 * 119.99491 * 174.90116 * 11 10 9 13 13 H 1.08004 * 120.00548 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99643 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00215 * 359.72936 * 14 12 11 16 16 Si 1.86809 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46965 * 60.00052 * 16 14 12 18 18 H 1.48496 * 109.47077 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46989 * 300.00164 * 16 14 12 20 20 C 1.54266 * 110.07300 * 186.59994 * 9 8 6 21 21 C 1.54893 * 104.19538 * 95.69676 * 20 9 8 22 22 C 1.54885 * 102.74622 * 37.94395 * 21 20 9 23 23 C 1.53873 * 110.03335 * 303.79171 * 9 8 6 24 24 H 1.08997 * 109.47374 * 300.00713 * 1 2 3 25 25 H 1.09005 * 109.47083 * 60.00370 * 1 2 3 26 26 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47374 * 239.99287 * 2 1 3 28 28 H 1.08997 * 109.47398 * 59.99302 * 3 2 1 29 29 H 1.08999 * 109.47189 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46659 * 299.99890 * 3 2 1 31 31 H 0.96993 * 120.00337 * 354.90996 * 8 6 5 32 32 H 1.09000 * 109.46889 * 295.19062 * 10 9 8 33 33 H 1.09002 * 109.46716 * 175.19463 * 10 9 8 34 34 H 0.96991 * 120.00121 * 354.90771 * 11 10 9 35 35 H 0.97004 * 119.99748 * 180.02562 * 15 14 12 36 36 H 1.08998 * 110.48484 * 214.37615 * 20 9 8 37 37 H 1.09002 * 110.48368 * 337.02001 * 20 9 8 38 38 H 1.08996 * 110.75414 * 279.62819 * 21 20 9 39 39 H 1.08993 * 110.75453 * 156.25906 * 21 20 9 40 40 H 1.09001 * 110.48547 * 203.37828 * 22 21 20 41 41 H 1.08995 * 110.48796 * 80.73505 * 22 21 20 42 42 H 1.09007 * 110.03098 * 359.95284 * 23 9 8 43 43 H 1.09002 * 110.03263 * 121.38122 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2020 5 6 2.4119 -1.2473 2.1606 6 6 2.8892 -1.9223 3.3299 7 8 4.0082 -1.6957 3.7485 8 7 2.0981 -2.8086 3.9664 9 6 2.6237 -3.5812 5.0948 10 6 2.9575 -2.6464 6.2592 11 7 1.7734 -1.8568 6.6064 12 6 1.8013 -1.0220 7.6915 13 1 2.6963 -0.9453 8.2911 14 6 0.6795 -0.2735 8.0203 15 7 -0.4092 -0.3621 7.2860 16 14 0.7177 0.8659 9.5002 17 1 1.7852 1.8816 9.3154 18 1 -0.5950 1.5470 9.6345 19 1 0.9936 0.0753 10.7266 20 6 1.5896 -4.6347 5.5426 21 6 2.0217 -5.9276 4.8072 22 6 3.5677 -5.8526 4.8638 23 6 3.8814 -4.3555 4.6632 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.1809 -2.9351 3.6773 32 1 3.7674 -1.9777 5.9675 33 1 3.2666 -3.2367 7.1218 34 1 0.9697 -1.9255 6.0678 35 1 -1.1930 0.1612 7.5156 36 1 1.6334 -4.7772 6.6224 37 1 0.5863 -4.3387 5.2362 38 1 1.6721 -5.9200 3.7749 39 1 1.6584 -6.8107 5.3327 40 1 4.0080 -6.4454 4.0621 41 1 3.9309 -6.1917 5.8339 42 1 4.1003 -4.1572 3.6139 43 1 4.7297 -4.0654 5.2833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495157673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:27 Heat of formation + Delta-G solvation = 7.918566 kcal Electronic energy + Delta-G solvation = -21911.103806 eV Core-core repulsion = 18764.236023 eV Total energy + Delta-G solvation = -3146.867783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03809 -37.52804 -36.37064 -34.26811 -33.19373 -31.80391 -30.82483 -28.61768 -28.02501 -27.34428 -24.61091 -23.88653 -22.16736 -21.62391 -20.61266 -19.04809 -18.25920 -17.04370 -16.09311 -15.98939 -15.08697 -14.85311 -14.47894 -14.41424 -14.29593 -13.75648 -13.61618 -13.16403 -12.97824 -12.66760 -12.38679 -12.11968 -11.90716 -11.68031 -11.55354 -11.46540 -11.17419 -10.94042 -10.87269 -10.77493 -10.69219 -10.47523 -10.39681 -10.22887 -10.08179 -10.03000 -9.72045 -9.60542 -8.77279 -8.57208 -6.80863 -5.69826 -2.96092 1.88578 2.49552 3.39044 3.48828 3.52488 3.54197 3.89469 4.34223 4.62550 4.74964 4.83353 4.86990 4.95259 5.03282 5.10058 5.44690 5.45619 5.56188 5.61802 5.65928 5.67420 5.69133 5.71118 5.81548 5.87478 5.92132 5.99555 6.05438 6.06060 6.08678 6.22849 6.31747 6.41107 6.52247 6.55929 6.61924 6.94384 7.13356 7.42711 7.77019 7.86912 8.49722 8.56131 9.61010 10.19524 10.55511 11.53424 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.006263 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.915145 B = 4469.975667 C = 6521.124746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.013 3.987 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.208 4.208 6 C 0.636 3.364 7 O -0.518 6.518 8 N -0.697 5.697 9 C 0.170 3.830 10 C 0.144 3.856 11 N -0.727 5.727 12 C -0.231 4.231 13 H 0.068 0.932 14 C -0.016 4.016 15 N -0.937 5.937 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.382 0.618 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -7.306 -14.906 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.005 4.005 3 C -0.205 4.205 4 C -0.097 4.097 5 C -0.211 4.211 6 C 0.422 3.578 7 O -0.395 6.395 8 N -0.348 5.348 9 C 0.084 3.916 10 C 0.015 3.985 11 N -0.371 5.371 12 C -0.363 4.363 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.586 5.586 16 Si 0.737 3.263 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.213 1.213 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.234 0.766 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.192 -7.075 -14.428 16.383 hybrid contribution -0.782 0.739 0.561 1.213 sum 2.410 -6.336 -13.867 15.435 Atomic orbital electron populations 1.21852 0.92881 1.02763 1.02914 1.18427 0.96176 0.95144 0.90764 1.21852 1.01733 0.94074 1.02813 1.22528 0.97313 0.95380 0.94493 1.20997 1.01539 1.02108 0.96436 1.14586 0.84731 0.78435 0.80069 1.90818 1.19871 1.63249 1.65604 1.45893 1.15164 1.40767 1.32949 1.21323 0.93469 0.90937 0.85862 1.21186 0.91985 0.92864 0.92417 1.42203 1.11513 1.49889 1.33449 1.19205 0.97652 1.16163 1.03241 0.91365 1.24684 0.96220 1.00776 0.99462 1.69643 1.03156 1.45227 1.40596 0.86278 0.76479 0.80850 0.82680 1.21403 1.21785 1.21335 1.22589 0.98140 0.93103 1.01633 1.22539 0.95700 0.97824 1.00244 1.22383 0.96010 0.96298 1.01466 1.22433 0.97503 0.93817 1.01981 0.91635 0.91440 0.92024 0.88516 0.91729 0.92023 0.91435 0.76574 0.94389 0.95369 0.78481 0.93690 0.89409 0.90912 0.91826 0.91575 0.92022 0.91484 0.91485 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.15 37.16 0.34 -0.99 16 2 C 0.01 0.13 3.30 -93.41 -0.31 -0.18 16 3 C -0.15 -1.41 9.15 37.16 0.34 -1.07 16 4 C -0.09 -1.38 12.56 -37.12 -0.47 -1.84 16 5 C -0.21 -3.60 13.62 -38.84 -0.53 -4.13 16 6 C 0.64 12.25 6.69 -14.33 -0.10 12.15 16 7 O -0.52 -11.55 14.35 5.27 0.08 -11.47 16 8 N -0.70 -11.96 4.49 -48.97 -0.22 -12.18 16 9 C 0.17 2.91 0.57 -130.69 -0.07 2.83 16 10 C 0.14 3.15 4.64 -4.04 -0.02 3.13 16 11 N -0.73 -18.93 5.27 -59.90 -0.32 -19.25 16 12 C -0.23 -6.72 9.99 -15.06 -0.15 -6.87 16 13 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 15 N -0.94 -28.66 13.06 55.49 0.72 -27.94 16 16 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C -0.12 -1.75 5.74 -25.07 -0.14 -1.89 16 21 C -0.13 -1.48 6.91 -24.74 -0.17 -1.66 16 22 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 23 C -0.12 -1.80 5.22 -25.61 -0.13 -1.93 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.40 6.08 8.20 -40.82 -0.33 5.74 16 32 H 0.04 0.93 6.55 -51.93 -0.34 0.59 16 33 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.38 10.20 7.19 -40.82 -0.29 9.91 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.09 1.42 7.79 -51.93 -0.40 1.02 16 37 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 43 H 0.07 1.19 7.67 -51.93 -0.40 0.79 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -33.75 353.74 -8.25 -42.01 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.15 Total: 10.06 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.68 Total: -4.67 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.19 Total: -59.37 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.75 -8.25 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495157673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.924 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds