Wall clock time and date at job start Tue Mar 31 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47482 * 2 1 4 4 C 1.47207 * 109.46783 * 119.99783 * 2 1 3 5 5 C 2.64607 * 109.46889 * 119.99863 * 2 1 3 6 6 C 4.07806 * 109.46833 * 119.99755 * 2 1 3 7 7 O 1.21612 * 119.99534 * 172.65009 * 6 5 4 8 8 N 1.34776 * 119.99901 * 352.64634 * 6 5 4 9 9 C 1.46508 * 119.99573 * 174.90459 * 8 6 5 10 10 C 1.53005 * 110.01420 * 65.18236 * 9 8 6 11 11 N 1.46500 * 109.46936 * 55.19281 * 10 9 8 12 12 C 1.36935 * 119.99491 * 174.90116 * 11 10 9 13 13 H 1.08004 * 120.00548 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99643 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00215 * 359.72936 * 14 12 11 16 16 Si 1.86809 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46965 * 60.00052 * 16 14 12 18 18 H 1.48496 * 109.47077 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46989 * 300.00164 * 16 14 12 20 20 C 1.54266 * 110.07300 * 186.59994 * 9 8 6 21 21 C 1.54893 * 104.19538 * 95.69676 * 20 9 8 22 22 C 1.54885 * 102.74622 * 37.94395 * 21 20 9 23 23 C 1.53873 * 110.03335 * 303.79171 * 9 8 6 24 24 H 1.08997 * 109.47374 * 300.00713 * 1 2 3 25 25 H 1.09005 * 109.47083 * 60.00370 * 1 2 3 26 26 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47374 * 239.99287 * 2 1 3 28 28 H 1.08997 * 109.47398 * 59.99302 * 3 2 1 29 29 H 1.08999 * 109.47189 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46659 * 299.99890 * 3 2 1 31 31 H 0.96993 * 120.00337 * 354.90996 * 8 6 5 32 32 H 1.09000 * 109.46889 * 295.19062 * 10 9 8 33 33 H 1.09002 * 109.46716 * 175.19463 * 10 9 8 34 34 H 0.96991 * 120.00121 * 354.90771 * 11 10 9 35 35 H 0.97004 * 119.99748 * 180.02562 * 15 14 12 36 36 H 1.08998 * 110.48484 * 214.37615 * 20 9 8 37 37 H 1.09002 * 110.48368 * 337.02001 * 20 9 8 38 38 H 1.08996 * 110.75414 * 279.62819 * 21 20 9 39 39 H 1.08993 * 110.75453 * 156.25906 * 21 20 9 40 40 H 1.09001 * 110.48547 * 203.37828 * 22 21 20 41 41 H 1.08995 * 110.48796 * 80.73505 * 22 21 20 42 42 H 1.09007 * 110.03098 * 359.95284 * 23 9 8 43 43 H 1.09002 * 110.03263 * 121.38122 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2020 5 6 2.4119 -1.2473 2.1606 6 6 2.8892 -1.9223 3.3299 7 8 4.0082 -1.6957 3.7485 8 7 2.0981 -2.8086 3.9664 9 6 2.6237 -3.5812 5.0948 10 6 2.9575 -2.6464 6.2592 11 7 1.7734 -1.8568 6.6064 12 6 1.8013 -1.0220 7.6915 13 1 2.6963 -0.9453 8.2911 14 6 0.6795 -0.2735 8.0203 15 7 -0.4092 -0.3621 7.2860 16 14 0.7177 0.8659 9.5002 17 1 1.7852 1.8816 9.3154 18 1 -0.5950 1.5470 9.6345 19 1 0.9936 0.0753 10.7266 20 6 1.5896 -4.6347 5.5426 21 6 2.0217 -5.9276 4.8072 22 6 3.5677 -5.8526 4.8638 23 6 3.8814 -4.3555 4.6632 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.1809 -2.9351 3.6773 32 1 3.7674 -1.9777 5.9675 33 1 3.2666 -3.2367 7.1218 34 1 0.9697 -1.9255 6.0678 35 1 -1.1930 0.1612 7.5156 36 1 1.6334 -4.7772 6.6224 37 1 0.5863 -4.3387 5.2362 38 1 1.6721 -5.9200 3.7749 39 1 1.6584 -6.8107 5.3327 40 1 4.0080 -6.4454 4.0621 41 1 3.9309 -6.1917 5.8339 42 1 4.1003 -4.1572 3.6139 43 1 4.7297 -4.0654 5.2833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495157673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:27 Heat of formation + Delta-G solvation = -13.871951 kcal Electronic energy + Delta-G solvation = -21912.048714 eV Core-core repulsion = 18764.236023 eV Total energy + Delta-G solvation = -3147.812691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47831 -38.91775 -37.31154 -36.19925 -34.67452 -33.27027 -32.60019 -29.85934 -29.56657 -28.07762 -26.45690 -25.17070 -24.01072 -22.70649 -21.71747 -20.51498 -19.59079 -19.17413 -17.46294 -17.09176 -16.62675 -16.31234 -15.93030 -15.77103 -15.55431 -15.28101 -15.03520 -14.60009 -14.44853 -14.10841 -13.63021 -13.25886 -13.13361 -12.96780 -12.81011 -12.74806 -12.44673 -12.38004 -12.28542 -12.23566 -12.01172 -11.92979 -11.82986 -11.76222 -11.43011 -11.40980 -11.22416 -11.19742 -10.88053 -10.07780 -8.98958 -7.97183 -5.24412 0.54088 1.24592 1.42898 1.46574 1.52445 2.06835 2.51713 2.53992 3.16793 3.35868 3.49551 3.68553 3.88776 4.04136 4.13293 4.15524 4.16249 4.37274 4.44868 4.50501 4.57520 4.66224 4.76692 4.78053 4.83444 4.90247 4.91396 4.94068 5.06878 5.08299 5.08640 5.17899 5.24210 5.31125 5.32714 5.34626 5.44328 5.48834 5.61669 6.19970 6.24897 6.45388 7.11728 7.32036 8.05860 8.34304 9.25807 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.006263 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.915145 B = 4469.975667 C = 6521.124746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.052 4.052 5 C -0.275 4.275 6 C 0.631 3.369 7 O -0.562 6.562 8 N -0.688 5.688 9 C 0.170 3.830 10 C 0.145 3.855 11 N -0.731 5.731 12 C -0.249 4.249 13 H 0.066 0.934 14 C -0.070 4.070 15 N -0.965 5.965 16 Si 0.972 3.028 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.275 1.275 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.114 4.114 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.408 0.592 32 H 0.007 0.993 33 H 0.032 0.968 34 H 0.376 0.624 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -8.080 -16.406 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.054 4.054 5 C -0.278 4.278 6 C 0.419 3.581 7 O -0.442 6.442 8 N -0.338 5.338 9 C 0.085 3.915 10 C 0.018 3.982 11 N -0.374 5.374 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.263 4.263 15 N -0.615 5.615 16 Si 0.800 3.200 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.245 0.755 32 H 0.025 0.975 33 H 0.049 0.951 34 H 0.209 0.791 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.471 -7.882 -15.930 17.944 hybrid contribution -0.549 1.049 0.950 1.518 sum 1.922 -6.833 -14.980 16.577 Atomic orbital electron populations 1.21868 0.91650 1.03195 1.03467 1.18883 0.97072 0.95332 0.89704 1.21882 1.01479 0.93568 1.03513 1.23593 0.94759 0.92983 0.94095 1.20918 1.04483 1.04742 0.97627 1.14906 0.84340 0.78346 0.80537 1.90775 1.21616 1.64774 1.67064 1.45865 1.15400 1.40196 1.32380 1.21339 0.95501 0.90440 0.84252 1.21236 0.89750 0.92748 0.94506 1.42284 1.12376 1.50039 1.32730 1.19551 0.97699 1.16759 1.04029 0.91616 1.25484 0.95928 1.02435 1.02414 1.69787 1.03563 1.46059 1.42100 0.85246 0.76317 0.78766 0.79628 1.21237 1.21554 1.20084 1.22548 0.97280 0.94153 1.01221 1.22505 0.95231 0.96520 1.00742 1.22376 0.96394 0.93691 1.02844 1.22374 0.95858 0.96054 1.01032 0.93651 0.88337 0.91714 0.85107 0.93693 0.92519 0.88103 0.75534 0.97462 0.95058 0.79126 0.93943 0.90736 0.91128 0.90541 0.89310 0.89742 0.90658 0.92213 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.15 71.98 0.66 -1.60 16 2 C 0.01 0.14 3.30 -12.60 -0.04 0.10 16 3 C -0.15 -2.51 9.15 71.98 0.66 -1.85 16 4 C -0.05 -1.48 12.56 31.13 0.39 -1.09 16 5 C -0.27 -9.83 13.62 30.01 0.41 -9.42 16 6 C 0.63 25.61 6.69 85.49 0.57 26.18 16 7 O -0.56 -26.65 14.35 -4.07 -0.06 -26.71 16 8 N -0.69 -24.51 4.49 -427.10 -1.92 -26.43 16 9 C 0.17 5.99 0.57 4.33 0.00 5.99 16 10 C 0.15 6.66 4.64 86.38 0.40 7.06 16 11 N -0.73 -39.50 5.27 -343.44 -1.81 -41.31 16 12 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 13 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 14 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 15 N -0.96 -59.86 13.06 21.65 0.28 -59.57 16 16 Si 0.97 48.01 29.55 68.60 2.03 50.04 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 20 C -0.11 -3.36 5.74 31.67 0.18 -3.18 16 21 C -0.11 -2.38 6.91 31.89 0.22 -2.16 16 22 C -0.12 -2.54 6.83 31.67 0.22 -2.33 16 23 C -0.11 -3.49 5.22 31.32 0.16 -3.33 16 24 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.41 12.79 8.20 -92.71 -0.76 12.03 16 32 H 0.01 0.39 6.55 -2.39 -0.02 0.37 16 33 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 34 H 0.38 20.82 7.19 -92.72 -0.67 20.15 16 35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.07 2.40 7.79 -2.39 -0.02 2.38 16 37 H 0.07 2.10 7.70 -2.39 -0.02 2.08 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.91 6.99 -2.38 -0.02 1.90 16 43 H 0.06 2.00 7.67 -2.39 -0.02 1.98 16 Total: -1.00 -75.68 353.74 3.24 -72.44 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.42 Total: 34.85 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.14 Total: -3.31 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -3.45 Total: -127.31 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -75.68 3.24 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495157673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.567 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds