Wall clock time and date at job start Tue Mar 31 2020 00:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47096 * 120.00519 * 2 1 4 4 O 1.21605 * 120.00443 * 180.02562 * 3 2 1 5 5 N 1.34784 * 119.99778 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00225 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47319 * 179.97438 * 6 5 3 8 8 C 1.31000 * 119.99581 * 125.00025 * 7 6 5 9 9 C 1.50701 * 119.99581 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.47256 * 124.99984 * 9 8 7 11 11 C 1.36929 * 120.00285 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.38818 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31617 * 119.99559 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99970 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47204 * 90.00031 * 15 13 11 17 17 H 1.48501 * 109.46884 * 209.99717 * 15 13 11 18 18 H 1.48499 * 109.47250 * 329.99610 * 15 13 11 19 19 C 1.33000 * 119.99818 * 179.97438 * 2 1 3 20 20 C 1.51445 * 126.34246 * 179.68333 * 19 2 1 21 21 C 1.54277 * 106.84986 * 180.62383 * 20 19 2 22 22 C 1.54975 * 103.75066 * 23.12954 * 21 20 19 23 23 C 1.51846 * 126.34114 * 0.02562 * 19 2 1 24 24 H 1.09001 * 109.46608 * 270.00038 * 1 2 3 25 25 H 1.08990 * 109.46754 * 29.99989 * 1 2 3 26 26 H 1.08994 * 109.46942 * 150.00231 * 1 2 3 27 27 H 0.97001 * 119.99818 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.47155 * 300.00339 * 6 5 3 29 29 H 1.09008 * 109.47309 * 59.99592 * 6 5 3 30 30 H 1.07996 * 119.99790 * 304.99812 * 7 6 5 31 31 H 1.07996 * 120.00629 * 359.97438 * 8 7 6 32 32 H 1.09002 * 109.47184 * 244.99769 * 9 8 7 33 33 H 1.09004 * 109.47434 * 5.00222 * 9 8 7 34 34 H 0.97005 * 119.99377 * 359.97438 * 10 9 8 35 35 H 0.97000 * 119.99939 * 179.97438 * 14 13 11 36 36 H 1.08995 * 109.98545 * 299.97784 * 20 19 2 37 37 H 1.09011 * 109.97778 * 61.27606 * 20 19 2 38 38 H 1.08999 * 110.57233 * 264.55645 * 21 20 19 39 39 H 1.09008 * 110.56542 * 141.69541 * 21 20 19 40 40 H 1.09009 * 110.83306 * 204.70511 * 22 21 20 41 41 H 1.08993 * 110.83946 * 81.12387 * 22 21 20 42 42 H 1.09006 * 110.43812 * 274.67962 * 23 19 2 43 43 H 1.09000 * 110.43863 * 37.08013 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2738 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5688 2.4411 -0.0005 6 6 2.3012 3.7098 -0.0011 7 6 1.3220 4.8553 -0.0022 8 6 1.3907 5.7765 0.9265 9 6 0.4111 6.9217 0.9257 10 7 -0.2655 6.9866 2.2236 11 6 -1.2060 7.9538 2.4579 12 1 -1.4488 8.6692 1.6860 13 6 -1.8466 8.0156 3.6878 14 7 -1.5503 7.1441 4.6286 15 14 -3.1292 9.3355 4.0076 16 1 -4.4689 8.8296 3.6146 17 1 -3.1347 9.6807 5.4519 18 1 -2.8036 10.5455 3.2107 19 6 2.1720 -1.1518 0.0005 20 6 3.6772 -1.3192 -0.0062 21 6 3.9584 -2.8361 -0.0187 22 6 2.6623 -3.4461 -0.6100 23 6 1.5626 -2.5427 0.0006 24 1 -0.3632 0.0000 1.0277 25 1 -0.3632 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.5988 2.4411 -0.0005 28 1 2.9279 3.7679 0.8888 29 1 2.9280 3.7671 -0.8911 30 1 0.5637 4.9166 -0.7687 31 1 2.1488 5.7150 1.6932 32 1 0.9440 7.8556 0.7467 33 1 -0.3271 6.7679 0.1385 34 1 -0.0476 6.3438 2.9167 35 1 -1.9977 7.1875 5.4882 36 1 4.0997 -0.8545 -0.8970 37 1 4.1060 -0.8681 0.8888 38 1 4.1270 -3.2027 0.9938 39 1 4.8134 -3.0617 -0.6561 40 1 2.5381 -4.4799 -0.2874 41 1 2.6617 -3.3757 -1.6977 42 1 1.3331 -2.8576 1.0186 43 1 0.6637 -2.5644 -0.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497558974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:49 Heat of formation + Delta-G solvation = -14.842349 kcal Electronic energy + Delta-G solvation = -20512.083249 eV Core-core repulsion = 17364.228478 eV Total energy + Delta-G solvation = -3147.854771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04801 -38.11608 -36.21450 -34.70291 -33.78696 -32.62758 -30.54724 -29.18839 -27.97949 -27.07752 -24.81677 -23.75948 -21.98066 -20.96192 -20.84731 -19.67544 -18.35242 -17.10367 -16.62292 -16.17153 -15.96761 -15.24111 -14.85765 -14.59597 -13.97049 -13.94374 -13.66624 -13.36394 -13.25816 -13.20388 -12.80872 -12.68769 -12.50758 -12.12510 -11.98025 -11.82666 -11.46845 -11.33059 -11.22353 -11.03658 -10.89683 -10.83708 -10.61445 -10.08871 -9.82766 -9.77067 -9.24545 -9.05426 -8.86687 -8.66848 -6.95939 -5.78982 -3.08564 1.25799 2.30228 3.25147 3.41192 3.42352 3.47305 3.49251 4.18397 4.38504 4.58441 4.70211 4.73230 4.86788 4.94546 5.02913 5.15474 5.27964 5.28775 5.39749 5.45454 5.49557 5.53366 5.54242 5.61130 5.64969 5.74843 5.78760 5.82749 5.95790 6.00670 6.04756 6.13303 6.27893 6.39454 6.43624 6.48980 6.57457 6.91358 7.15206 7.57453 7.67138 8.25810 8.39327 9.50576 10.07003 10.42374 11.43771 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002511 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.412810 B =11146.123395 C =11662.441002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.188 4.188 3 C 0.553 3.447 4 O -0.546 6.546 5 N -0.721 5.721 6 C 0.156 3.844 7 C -0.201 4.201 8 C -0.107 4.107 9 C 0.172 3.828 10 N -0.730 5.730 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.909 3.091 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.040 4.040 20 C -0.090 4.090 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.100 4.100 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.403 0.597 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -20.714 -11.955 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.191 4.191 3 C 0.342 3.658 4 O -0.426 6.426 5 N -0.373 5.373 6 C 0.033 3.967 7 C -0.221 4.221 8 C -0.126 4.126 9 C 0.045 3.955 10 N -0.374 5.374 11 C -0.373 4.373 12 H 0.089 0.911 13 C -0.210 4.210 14 N -0.581 5.581 15 Si 0.740 3.260 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.041 4.041 20 C -0.127 4.127 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.136 4.136 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.238 0.762 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.149 -20.527 -11.973 25.122 hybrid contribution -1.178 0.643 0.515 1.438 sum 6.971 -19.884 -11.458 23.984 Atomic orbital electron populations 1.20739 0.90666 1.02824 1.02713 1.20775 0.96109 0.91876 1.10306 1.18285 0.87185 0.83962 0.76380 1.90755 1.13558 1.87760 1.50525 1.45994 1.10740 1.05441 1.75096 1.20294 0.93433 0.80827 1.02118 1.22700 1.01459 0.96450 1.01461 1.23330 0.97626 0.95774 0.95916 1.19828 0.91810 0.93547 0.90266 1.42303 1.46548 1.37432 1.11128 1.19246 1.13332 1.06920 0.97811 0.91067 1.24773 1.00562 0.99294 0.96379 1.69668 1.45591 1.37732 1.05110 0.86156 0.81505 0.81183 0.77142 1.21664 1.21713 1.20706 1.22693 0.96479 0.93525 0.91440 1.21259 0.92170 0.95394 1.03868 1.22476 0.97695 0.95417 1.01133 1.22518 0.94587 0.98660 1.00398 1.21583 0.98547 0.91563 1.01936 0.90851 0.91626 0.91199 0.76153 0.91272 0.91190 0.86801 0.87276 0.95138 0.95680 0.78135 0.93444 0.89726 0.89749 0.91427 0.91316 0.91083 0.91195 0.89521 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.35 36.01 0.34 -0.61 16 2 C -0.19 -2.07 6.00 -102.85 -0.62 -2.69 16 3 C 0.55 7.58 7.75 -12.66 -0.10 7.49 16 4 O -0.55 -8.98 14.11 5.27 0.07 -8.91 16 5 N -0.72 -9.11 5.49 -62.68 -0.34 -9.45 16 6 C 0.16 2.08 6.11 -5.20 -0.03 2.05 16 7 C -0.20 -2.82 9.24 -36.03 -0.33 -3.15 16 8 C -0.11 -1.77 9.24 -36.03 -0.33 -2.10 16 9 C 0.17 3.48 6.70 -5.19 -0.03 3.45 16 10 N -0.73 -18.74 5.59 -61.08 -0.34 -19.08 16 11 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 12 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 13 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 14 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 15 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.04 -0.40 6.12 -100.23 -0.61 -1.01 16 20 C -0.09 -0.94 4.82 -26.85 -0.13 -1.07 16 21 C -0.13 -0.99 6.87 -25.02 -0.17 -1.16 16 22 C -0.12 -0.81 6.95 -24.70 -0.17 -0.98 16 23 C -0.10 -0.73 6.07 -26.33 -0.16 -0.89 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.51 6.70 -51.93 -0.35 0.17 16 26 H 0.07 0.48 6.58 -51.93 -0.34 0.14 16 27 H 0.40 4.43 6.56 -40.82 -0.27 4.16 16 28 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.11 1.50 7.84 -52.49 -0.41 1.09 16 31 H 0.11 1.78 7.84 -52.49 -0.41 1.37 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 34 H 0.39 10.41 7.66 -40.82 -0.31 10.10 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 37 H 0.08 1.01 7.69 -51.92 -0.40 0.61 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.49 6.86 -51.93 -0.36 0.13 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -32.35 352.09 -9.19 -41.54 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.98 Total: 9.03 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.60 Total: -8.16 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.04 Total: -56.19 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.35 -9.19 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497558974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.698 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds