Wall clock time and date at job start Tue Mar 31 2020 00:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47096 * 120.00519 * 2 1 4 4 O 1.21605 * 120.00443 * 180.02562 * 3 2 1 5 5 N 1.34784 * 119.99778 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00225 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47319 * 179.97438 * 6 5 3 8 8 C 1.31000 * 119.99581 * 125.00025 * 7 6 5 9 9 C 1.50701 * 119.99581 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.47256 * 124.99984 * 9 8 7 11 11 C 1.36929 * 120.00285 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.38818 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31617 * 119.99559 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99970 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47204 * 90.00031 * 15 13 11 17 17 H 1.48501 * 109.46884 * 209.99717 * 15 13 11 18 18 H 1.48499 * 109.47250 * 329.99610 * 15 13 11 19 19 C 1.33000 * 119.99818 * 179.97438 * 2 1 3 20 20 C 1.51445 * 126.34246 * 179.68333 * 19 2 1 21 21 C 1.54277 * 106.84986 * 180.62383 * 20 19 2 22 22 C 1.54975 * 103.75066 * 23.12954 * 21 20 19 23 23 C 1.51846 * 126.34114 * 0.02562 * 19 2 1 24 24 H 1.09001 * 109.46608 * 270.00038 * 1 2 3 25 25 H 1.08990 * 109.46754 * 29.99989 * 1 2 3 26 26 H 1.08994 * 109.46942 * 150.00231 * 1 2 3 27 27 H 0.97001 * 119.99818 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.47155 * 300.00339 * 6 5 3 29 29 H 1.09008 * 109.47309 * 59.99592 * 6 5 3 30 30 H 1.07996 * 119.99790 * 304.99812 * 7 6 5 31 31 H 1.07996 * 120.00629 * 359.97438 * 8 7 6 32 32 H 1.09002 * 109.47184 * 244.99769 * 9 8 7 33 33 H 1.09004 * 109.47434 * 5.00222 * 9 8 7 34 34 H 0.97005 * 119.99377 * 359.97438 * 10 9 8 35 35 H 0.97000 * 119.99939 * 179.97438 * 14 13 11 36 36 H 1.08995 * 109.98545 * 299.97784 * 20 19 2 37 37 H 1.09011 * 109.97778 * 61.27606 * 20 19 2 38 38 H 1.08999 * 110.57233 * 264.55645 * 21 20 19 39 39 H 1.09008 * 110.56542 * 141.69541 * 21 20 19 40 40 H 1.09009 * 110.83306 * 204.70511 * 22 21 20 41 41 H 1.08993 * 110.83946 * 81.12387 * 22 21 20 42 42 H 1.09006 * 110.43812 * 274.67962 * 23 19 2 43 43 H 1.09000 * 110.43863 * 37.08013 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2738 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5688 2.4411 -0.0005 6 6 2.3012 3.7098 -0.0011 7 6 1.3220 4.8553 -0.0022 8 6 1.3907 5.7765 0.9265 9 6 0.4111 6.9217 0.9257 10 7 -0.2655 6.9866 2.2236 11 6 -1.2060 7.9538 2.4579 12 1 -1.4488 8.6692 1.6860 13 6 -1.8466 8.0156 3.6878 14 7 -1.5503 7.1441 4.6286 15 14 -3.1292 9.3355 4.0076 16 1 -4.4689 8.8296 3.6146 17 1 -3.1347 9.6807 5.4519 18 1 -2.8036 10.5455 3.2107 19 6 2.1720 -1.1518 0.0005 20 6 3.6772 -1.3192 -0.0062 21 6 3.9584 -2.8361 -0.0187 22 6 2.6623 -3.4461 -0.6100 23 6 1.5626 -2.5427 0.0006 24 1 -0.3632 0.0000 1.0277 25 1 -0.3632 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.5988 2.4411 -0.0005 28 1 2.9279 3.7679 0.8888 29 1 2.9280 3.7671 -0.8911 30 1 0.5637 4.9166 -0.7687 31 1 2.1488 5.7150 1.6932 32 1 0.9440 7.8556 0.7467 33 1 -0.3271 6.7679 0.1385 34 1 -0.0476 6.3438 2.9167 35 1 -1.9977 7.1875 5.4882 36 1 4.0997 -0.8545 -0.8970 37 1 4.1060 -0.8681 0.8888 38 1 4.1270 -3.2027 0.9938 39 1 4.8134 -3.0617 -0.6561 40 1 2.5381 -4.4799 -0.2874 41 1 2.6617 -3.3757 -1.6977 42 1 1.3331 -2.8576 1.0186 43 1 0.6637 -2.5644 -0.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497558974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:48 Heat of formation + Delta-G solvation = -34.880803 kcal Electronic energy + Delta-G solvation = -20512.952181 eV Core-core repulsion = 17364.228478 eV Total energy + Delta-G solvation = -3148.723703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04607 -38.90298 -37.63834 -36.22400 -34.80981 -34.03843 -32.33353 -29.86226 -29.01923 -28.19438 -26.21907 -25.00556 -23.60471 -21.85013 -21.60327 -20.92678 -19.41405 -19.04568 -17.46096 -17.23492 -16.74402 -16.72579 -16.23975 -15.76469 -15.35020 -15.24073 -15.08948 -14.52440 -14.39178 -14.25212 -13.85111 -13.51054 -13.45228 -13.29991 -13.14306 -12.87945 -12.80993 -12.75009 -12.23407 -12.18413 -12.00003 -11.93810 -11.84476 -11.78819 -11.48078 -11.06436 -10.82622 -10.37171 -10.05710 -9.66679 -9.02805 -7.96899 -5.27085 0.38418 1.04226 1.47905 1.49801 1.58502 2.24232 2.39520 2.56504 3.36872 3.45872 3.70837 3.74954 3.93753 4.06895 4.14610 4.17411 4.21822 4.31097 4.44698 4.49547 4.62844 4.67574 4.71168 4.77633 4.81625 4.89855 4.91028 4.94726 4.98761 5.06113 5.12772 5.18044 5.21821 5.36201 5.40916 5.46696 5.52596 5.63679 5.66279 5.81441 6.25057 6.56219 7.21684 7.30999 8.04798 8.28996 9.26695 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002511 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.412810 B =11146.123395 C =11662.441002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.205 4.205 3 C 0.544 3.456 4 O -0.582 6.582 5 N -0.716 5.716 6 C 0.158 3.842 7 C -0.162 4.162 8 C -0.131 4.131 9 C 0.174 3.826 10 N -0.745 5.745 11 C -0.249 4.249 12 H 0.079 0.921 13 C -0.077 4.077 14 N -0.970 5.970 15 Si 0.978 3.022 16 H -0.284 1.284 17 H -0.295 1.295 18 H -0.268 1.268 19 C -0.039 4.039 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.096 4.096 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.412 0.588 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.374 0.626 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 -21.914 -13.248 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.207 4.207 3 C 0.335 3.665 4 O -0.465 6.465 5 N -0.368 5.368 6 C 0.035 3.965 7 C -0.181 4.181 8 C -0.151 4.151 9 C 0.048 3.952 10 N -0.388 5.388 11 C -0.381 4.381 12 H 0.097 0.903 13 C -0.269 4.269 14 N -0.621 5.621 15 Si 0.806 3.194 16 H -0.211 1.211 17 H -0.222 1.222 18 H -0.193 1.193 19 C -0.041 4.041 20 C -0.131 4.131 21 C -0.164 4.164 22 C -0.157 4.157 23 C -0.133 4.133 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.249 0.751 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.206 0.794 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.968 -21.714 -13.315 26.408 hybrid contribution -0.702 0.968 0.822 1.451 sum 6.266 -20.746 -12.493 25.015 Atomic orbital electron populations 1.20768 0.88579 1.04054 1.03134 1.20877 0.97475 0.90692 1.11704 1.18836 0.86998 0.85034 0.75622 1.90736 1.15154 1.88305 1.52268 1.45924 1.11192 1.04958 1.74703 1.20207 0.93279 0.81011 1.01992 1.22770 1.00419 0.94858 1.00029 1.23008 0.98125 0.96184 0.97744 1.19910 0.92271 0.95058 0.87952 1.42541 1.46649 1.36709 1.12855 1.19679 1.13244 1.07181 0.97951 0.90329 1.25645 1.03112 1.01789 0.96380 1.69829 1.47095 1.39744 1.05409 0.85081 0.78849 0.78858 0.76607 1.21112 1.22190 1.19323 1.23056 0.96392 0.94928 0.89754 1.21254 0.92671 0.97349 1.01814 1.22470 0.98859 0.93153 1.01888 1.22537 0.93211 0.99451 1.00477 1.21668 0.99210 0.89429 1.02961 0.90747 0.91184 0.89225 0.75066 0.92463 0.90399 0.85125 0.87556 0.95128 0.94794 0.79443 0.93913 0.91625 0.92119 0.90814 0.90684 0.89060 0.90944 0.88467 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.35 71.24 0.67 -0.95 16 2 C -0.20 -4.35 6.00 -18.70 -0.11 -4.46 16 3 C 0.54 14.97 7.75 86.57 0.67 15.64 16 4 O -0.58 -19.77 14.11 -4.05 -0.06 -19.83 16 5 N -0.72 -17.57 5.49 -470.46 -2.58 -20.16 16 6 C 0.16 4.11 6.11 85.64 0.52 4.63 16 7 C -0.16 -4.28 9.24 25.65 0.24 -4.05 16 8 C -0.13 -4.27 9.24 25.65 0.24 -4.04 16 9 C 0.17 6.93 6.70 85.63 0.57 7.50 16 10 N -0.74 -38.44 5.59 -347.15 -1.94 -40.38 16 11 C -0.25 -14.00 9.99 84.04 0.84 -13.16 16 12 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 13 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 14 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 15 Si 0.98 46.00 29.55 68.60 2.03 48.02 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 C -0.04 -0.76 6.12 -17.01 -0.10 -0.87 16 20 C -0.09 -1.99 4.82 30.52 0.15 -1.84 16 21 C -0.13 -1.77 6.87 31.70 0.22 -1.55 16 22 C -0.12 -1.25 6.95 31.91 0.22 -1.03 16 23 C -0.10 -1.15 6.07 30.85 0.19 -0.97 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 25 H 0.07 0.96 6.70 -2.39 -0.02 0.94 16 26 H 0.09 0.97 6.58 -2.39 -0.02 0.95 16 27 H 0.41 8.50 6.56 -92.71 -0.61 7.89 16 28 H 0.06 1.65 7.79 -2.39 -0.02 1.63 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.13 3.09 7.84 -2.91 -0.02 3.06 16 31 H 0.11 3.52 7.84 -2.91 -0.02 3.49 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.03 1.30 7.79 -2.39 -0.02 1.28 16 34 H 0.37 20.61 7.66 -92.70 -0.71 19.90 16 35 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 37 H 0.06 1.55 7.69 -2.38 -0.02 1.53 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.09 0.86 6.86 -2.39 -0.02 0.84 16 Total: -1.00 -70.06 352.09 2.18 -67.88 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.31 Total: 33.14 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.77 Total: -9.12 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.24 Total: -120.09 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.06 Total: -19.83 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.06 2.18 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497558974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.995 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds