Wall clock time and date at job start Tue Mar 31 2020 00:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50710 * 119.99879 * 2 1 4 4 C 1.52997 * 109.46939 * 125.47746 * 3 2 1 5 5 C 1.50703 * 112.90593 * 284.64930 * 4 3 2 6 6 O 1.21279 * 119.99793 * 135.85784 * 5 4 3 7 7 N 1.34775 * 120.00065 * 315.85576 * 5 4 3 8 8 C 1.46497 * 120.00008 * 174.99912 * 7 5 4 9 9 C 1.50693 * 109.47363 * 179.97438 * 8 7 5 10 10 C 1.31002 * 120.00082 * 127.07196 * 9 8 7 11 11 C 1.50698 * 120.00369 * 7.78134 * 10 9 8 12 12 N 1.46501 * 109.47156 * 127.07242 * 11 10 9 13 13 C 1.36936 * 119.99752 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00410 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99936 * 180.02562 * 13 12 11 16 16 N 1.31622 * 119.99942 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99921 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47225 * 89.99848 * 17 15 13 19 19 H 1.48503 * 109.47055 * 210.00040 * 17 15 13 20 20 H 1.48502 * 109.47063 * 329.99706 * 17 15 13 21 21 C 1.53784 * 113.61708 * 55.90084 * 4 3 2 22 22 C 1.53783 * 87.07835 * 89.11303 * 21 4 3 23 23 C 1.53777 * 113.61297 * 153.40032 * 4 3 2 24 24 H 1.07998 * 120.00078 * 359.97438 * 1 2 3 25 25 H 1.07990 * 119.99754 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00078 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47068 * 5.47612 * 3 2 1 28 28 H 1.09001 * 109.46649 * 245.47859 * 3 2 1 29 29 H 0.96997 * 120.00240 * 354.99194 * 7 5 4 30 30 H 1.09006 * 109.46935 * 299.99611 * 8 7 5 31 31 H 1.08999 * 109.47403 * 59.99163 * 8 7 5 32 32 H 1.08004 * 119.99983 * 307.07425 * 9 8 7 33 33 H 1.08003 * 120.00154 * 187.77857 * 10 9 8 34 34 H 1.09002 * 109.47534 * 247.08022 * 11 10 9 35 35 H 1.09005 * 109.46382 * 7.07863 * 11 10 9 36 36 H 0.96989 * 119.99928 * 0.02562 * 12 11 10 37 37 H 0.96997 * 120.00136 * 179.97438 * 16 15 13 38 38 H 1.08998 * 113.61443 * 334.57123 * 21 4 3 39 39 H 1.08997 * 113.61566 * 203.66000 * 21 4 3 40 40 H 1.09003 * 113.61462 * 139.97877 * 22 21 4 41 41 H 1.09004 * 113.61847 * 270.88614 * 22 21 4 42 42 H 1.08998 * 113.61718 * 156.33571 * 23 4 3 43 43 H 1.09002 * 113.69123 * 25.44039 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0436 1.3282 1.1747 5 6 2.3654 1.5633 2.4998 6 8 2.6754 0.8989 3.4659 7 7 1.4145 2.5119 2.6113 8 6 0.6784 2.6670 3.8684 9 6 -0.3189 3.7883 3.7315 10 6 -1.5791 3.5835 4.0247 11 6 -2.0030 2.2860 4.6633 12 7 -2.7692 2.5678 5.8798 13 6 -3.2613 1.5358 6.6334 14 1 -3.0843 0.5142 6.3313 15 6 -3.9877 1.8028 7.7858 16 7 -4.4611 0.8109 8.5099 17 14 -4.2944 3.5699 8.3081 18 1 -5.5583 4.0543 7.6974 19 1 -4.4020 3.6371 9.7877 20 1 -3.1666 4.4230 7.8546 21 6 4.0210 0.1411 1.1849 22 6 4.9548 1.0039 0.3197 23 6 4.2659 2.2312 0.9395 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9352 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3593 2.1313 0.0981 28 1 2.6146 1.4065 -0.9350 29 1 1.2175 3.0919 1.8592 30 1 0.1537 1.7397 4.0990 31 1 1.3771 2.8986 4.6723 32 1 0.0053 4.7609 3.3916 33 1 -2.3144 4.3446 3.8089 34 1 -2.6231 1.7231 3.9656 35 1 -1.1194 1.7007 4.9178 36 1 -2.9278 3.4853 6.1514 37 1 -4.9684 0.9974 9.3154 38 1 3.6412 -0.7417 0.6706 39 1 4.4245 -0.0838 2.1722 40 1 6.0073 0.9122 0.5880 41 1 4.7791 0.8988 -0.7509 42 1 4.7364 2.5777 1.8596 43 1 4.0851 3.0364 0.2273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497670957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:46 Heat of formation + Delta-G solvation = 36.138176 kcal Electronic energy + Delta-G solvation = -21362.972269 eV Core-core repulsion = 18217.328180 eV Total energy + Delta-G solvation = -3145.644089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89112 -38.16024 -36.56772 -34.79109 -34.30770 -32.81473 -30.87480 -28.92803 -26.84262 -26.00259 -25.35066 -24.33596 -22.06413 -21.04217 -20.29050 -19.28508 -18.39110 -17.67457 -16.95222 -16.36199 -15.74030 -15.49293 -15.16823 -14.62388 -14.44700 -14.02000 -13.82619 -13.75139 -13.32331 -13.04435 -12.81875 -12.67256 -12.43340 -12.21938 -12.09311 -11.86868 -11.40812 -11.33911 -11.21458 -10.86262 -10.81049 -10.53274 -10.45230 -10.11764 -9.79627 -9.59694 -9.46530 -9.21550 -9.03765 -8.63972 -7.22256 -5.76329 -3.12569 2.10204 2.14745 2.62875 3.35879 3.38119 3.40631 3.45825 4.11229 4.22705 4.44810 4.48192 4.59546 4.74275 4.87607 4.91307 5.01495 5.14998 5.18996 5.26395 5.38874 5.50711 5.52290 5.54195 5.57622 5.60996 5.65137 5.70313 5.82422 5.85297 5.88114 6.08341 6.12827 6.29813 6.44750 6.45194 6.51652 6.57276 6.76671 7.02709 7.52024 7.99429 8.25264 8.42284 9.20746 9.92628 10.12254 11.41928 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.003247 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.639864 B = 8621.458299 C = 8791.372543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C -0.066 4.066 4 C -0.103 4.103 5 C 0.528 3.472 6 O -0.536 6.536 7 N -0.722 5.722 8 C 0.138 3.862 9 C -0.192 4.192 10 C -0.120 4.120 11 C 0.167 3.833 12 N -0.751 5.751 13 C -0.246 4.246 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.121 4.121 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.397 0.603 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.073 4.926 -22.065 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.180 4.180 3 C -0.104 4.104 4 C -0.107 4.107 5 C 0.313 3.687 6 O -0.413 6.413 7 N -0.373 5.373 8 C 0.016 3.984 9 C -0.212 4.212 10 C -0.139 4.139 11 C 0.041 3.959 12 N -0.397 5.397 13 C -0.376 4.376 14 H 0.109 0.891 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.716 3.284 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.153 4.153 22 C -0.178 4.178 23 C -0.159 4.159 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.129 0.871 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.219 4.185 -21.255 27.673 hybrid contribution -0.574 1.631 0.237 1.745 sum 16.645 5.816 -21.019 27.435 Atomic orbital electron populations 1.23903 0.95876 1.02192 0.99759 1.22842 0.95957 0.98157 1.01066 1.20531 0.96917 0.96322 0.96586 1.22132 0.94884 1.00578 0.93058 1.20301 0.79023 0.79446 0.89902 1.90709 1.63265 1.47792 1.39509 1.46009 1.38592 1.36553 1.16179 1.20565 0.93294 0.98723 0.85812 1.22640 0.94330 0.98379 1.05806 1.23304 0.95840 0.99383 0.95367 1.19961 0.95232 0.92275 0.88458 1.42615 1.65212 1.05403 1.26430 1.19072 1.26728 0.88595 1.03185 0.89120 1.24678 1.00152 0.96858 0.97410 1.69704 1.41190 1.29673 1.17505 0.86524 0.78036 0.85961 0.77898 1.21047 1.21651 1.20290 1.22912 0.95074 0.95833 1.01471 1.22835 0.99292 0.96121 0.99540 1.22924 0.94644 0.96707 1.01596 0.88493 0.88306 0.87114 0.90949 0.89874 0.76928 0.89302 0.91110 0.87043 0.86957 0.94581 0.93947 0.80560 0.93002 0.90754 0.88601 0.91034 0.89906 0.89588 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 14.32 29.01 0.42 -1.27 16 2 C -0.16 -1.44 8.85 -36.02 -0.32 -1.76 16 3 C -0.07 -0.49 5.02 -27.88 -0.14 -0.63 16 4 C -0.10 -0.94 0.86 -154.85 -0.13 -1.07 16 5 C 0.53 6.84 6.81 -10.98 -0.07 6.77 16 6 O -0.54 -9.41 15.89 5.56 0.09 -9.32 16 7 N -0.72 -8.29 5.36 -61.48 -0.33 -8.62 16 8 C 0.14 1.94 5.76 -5.20 -0.03 1.91 16 9 C -0.19 -2.46 9.63 -36.03 -0.35 -2.81 16 10 C -0.12 -1.81 9.63 -36.03 -0.35 -2.16 16 11 C 0.17 3.29 6.34 -5.19 -0.03 3.26 16 12 N -0.75 -18.34 5.40 -61.08 -0.33 -18.67 16 13 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 14 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 15 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 16 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 17 Si 0.89 22.40 27.74 -169.99 -4.71 17.69 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 21 C -0.12 -1.05 6.82 -25.92 -0.18 -1.22 16 22 C -0.14 -0.93 7.73 -25.92 -0.20 -1.13 16 23 C -0.12 -0.88 7.17 -25.92 -0.19 -1.07 16 24 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 25 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.11 0.95 6.70 -52.49 -0.35 0.60 16 27 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 28 H 0.08 0.48 7.38 -51.93 -0.38 0.09 16 29 H 0.40 3.40 7.22 -40.82 -0.29 3.10 16 30 H 0.09 1.47 5.31 -51.93 -0.28 1.20 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.87 5.31 -51.93 -0.28 0.59 16 36 H 0.36 8.55 5.52 -40.82 -0.23 8.33 16 37 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 38 H 0.07 0.62 6.40 -51.93 -0.33 0.29 16 39 H 0.10 1.07 7.39 -51.93 -0.38 0.68 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.44 7.70 -51.93 -0.40 0.04 16 42 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -34.31 348.34 -7.72 -42.03 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.64 Total: 9.15 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.82 Total: -8.46 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.12 Total: -56.34 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.31 -7.72 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497670957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.172 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds