Wall clock time and date at job start Tue Mar 31 2020 00:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50710 * 119.99879 * 2 1 4 4 C 1.52997 * 109.46939 * 125.47746 * 3 2 1 5 5 C 1.50703 * 112.90593 * 284.64930 * 4 3 2 6 6 O 1.21279 * 119.99793 * 135.85784 * 5 4 3 7 7 N 1.34775 * 120.00065 * 315.85576 * 5 4 3 8 8 C 1.46497 * 120.00008 * 174.99912 * 7 5 4 9 9 C 1.50693 * 109.47363 * 179.97438 * 8 7 5 10 10 C 1.31002 * 120.00082 * 127.07196 * 9 8 7 11 11 C 1.50698 * 120.00369 * 7.78134 * 10 9 8 12 12 N 1.46501 * 109.47156 * 127.07242 * 11 10 9 13 13 C 1.36936 * 119.99752 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00410 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99936 * 180.02562 * 13 12 11 16 16 N 1.31622 * 119.99942 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99921 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47225 * 89.99848 * 17 15 13 19 19 H 1.48503 * 109.47055 * 210.00040 * 17 15 13 20 20 H 1.48502 * 109.47063 * 329.99706 * 17 15 13 21 21 C 1.53784 * 113.61708 * 55.90084 * 4 3 2 22 22 C 1.53783 * 87.07835 * 89.11303 * 21 4 3 23 23 C 1.53777 * 113.61297 * 153.40032 * 4 3 2 24 24 H 1.07998 * 120.00078 * 359.97438 * 1 2 3 25 25 H 1.07990 * 119.99754 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00078 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47068 * 5.47612 * 3 2 1 28 28 H 1.09001 * 109.46649 * 245.47859 * 3 2 1 29 29 H 0.96997 * 120.00240 * 354.99194 * 7 5 4 30 30 H 1.09006 * 109.46935 * 299.99611 * 8 7 5 31 31 H 1.08999 * 109.47403 * 59.99163 * 8 7 5 32 32 H 1.08004 * 119.99983 * 307.07425 * 9 8 7 33 33 H 1.08003 * 120.00154 * 187.77857 * 10 9 8 34 34 H 1.09002 * 109.47534 * 247.08022 * 11 10 9 35 35 H 1.09005 * 109.46382 * 7.07863 * 11 10 9 36 36 H 0.96989 * 119.99928 * 0.02562 * 12 11 10 37 37 H 0.96997 * 120.00136 * 179.97438 * 16 15 13 38 38 H 1.08998 * 113.61443 * 334.57123 * 21 4 3 39 39 H 1.08997 * 113.61566 * 203.66000 * 21 4 3 40 40 H 1.09003 * 113.61462 * 139.97877 * 22 21 4 41 41 H 1.09004 * 113.61847 * 270.88614 * 22 21 4 42 42 H 1.08998 * 113.61718 * 156.33571 * 23 4 3 43 43 H 1.09002 * 113.69123 * 25.44039 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0436 1.3282 1.1747 5 6 2.3654 1.5633 2.4998 6 8 2.6754 0.8989 3.4659 7 7 1.4145 2.5119 2.6113 8 6 0.6784 2.6670 3.8684 9 6 -0.3189 3.7883 3.7315 10 6 -1.5791 3.5835 4.0247 11 6 -2.0030 2.2860 4.6633 12 7 -2.7692 2.5678 5.8798 13 6 -3.2613 1.5358 6.6334 14 1 -3.0843 0.5142 6.3313 15 6 -3.9877 1.8028 7.7858 16 7 -4.4611 0.8109 8.5099 17 14 -4.2944 3.5699 8.3081 18 1 -5.5583 4.0543 7.6974 19 1 -4.4020 3.6371 9.7877 20 1 -3.1666 4.4230 7.8546 21 6 4.0210 0.1411 1.1849 22 6 4.9548 1.0039 0.3197 23 6 4.2659 2.2312 0.9395 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9352 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3593 2.1313 0.0981 28 1 2.6146 1.4065 -0.9350 29 1 1.2175 3.0919 1.8592 30 1 0.1537 1.7397 4.0990 31 1 1.3771 2.8986 4.6723 32 1 0.0053 4.7609 3.3916 33 1 -2.3144 4.3446 3.8089 34 1 -2.6231 1.7231 3.9656 35 1 -1.1194 1.7007 4.9178 36 1 -2.9278 3.4853 6.1514 37 1 -4.9684 0.9974 9.3154 38 1 3.6412 -0.7417 0.6706 39 1 4.4245 -0.0838 2.1722 40 1 6.0073 0.9122 0.5880 41 1 4.7791 0.8988 -0.7509 42 1 4.7364 2.5777 1.8596 43 1 4.0851 3.0364 0.2273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497670957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:45 Heat of formation + Delta-G solvation = 12.633332 kcal Electronic energy + Delta-G solvation = -21363.991515 eV Core-core repulsion = 18217.328180 eV Total energy + Delta-G solvation = -3146.663336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74147 -39.11020 -37.94779 -36.22816 -35.16509 -34.36862 -32.82692 -29.75929 -28.16860 -26.80738 -26.54273 -25.21736 -24.06467 -21.96779 -21.03281 -20.59320 -19.69297 -18.85243 -18.09914 -17.58095 -16.80467 -16.50178 -16.26646 -16.18591 -15.52647 -15.30524 -14.94378 -14.79151 -14.69685 -14.34416 -14.25306 -13.96165 -13.56934 -13.19662 -13.07370 -12.86425 -12.75633 -12.70829 -12.22567 -12.07280 -12.03132 -11.89680 -11.67407 -11.44769 -11.09943 -11.08493 -10.74286 -10.37026 -10.16499 -9.94735 -9.29574 -8.06767 -5.42059 1.00418 1.36105 1.39109 1.41209 1.48821 1.61733 2.37609 2.46151 3.24165 3.41434 3.56736 3.72091 3.79262 3.83020 3.88569 4.01440 4.08947 4.21310 4.29587 4.32452 4.54779 4.61269 4.65875 4.81219 4.82053 4.86885 4.89351 4.97688 5.00550 5.05076 5.12541 5.17832 5.23739 5.38360 5.51585 5.53227 5.67940 5.75305 5.84249 5.87157 6.16881 6.58284 7.03081 7.27460 7.76921 7.98968 9.14868 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.003247 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.639864 B = 8621.458299 C = 8791.372543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C -0.062 4.062 4 C -0.100 4.100 5 C 0.520 3.480 6 O -0.592 6.592 7 N -0.706 5.706 8 C 0.136 3.864 9 C -0.153 4.153 10 C -0.138 4.138 11 C 0.163 3.837 12 N -0.753 5.753 13 C -0.244 4.244 14 H 0.050 0.950 15 C -0.065 4.065 16 N -0.984 5.984 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.249 1.249 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.114 4.114 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.415 0.585 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.156 0.844 33 H 0.137 0.863 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.369 0.631 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.183 8.563 -24.658 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.099 4.099 4 C -0.103 4.103 5 C 0.308 3.692 6 O -0.472 6.472 7 N -0.359 5.359 8 C 0.013 3.987 9 C -0.172 4.172 10 C -0.157 4.157 11 C 0.038 3.962 12 N -0.399 5.399 13 C -0.375 4.375 14 H 0.068 0.932 15 C -0.257 4.257 16 N -0.634 5.634 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.221 1.221 20 H -0.174 1.174 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.152 4.152 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.253 0.747 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.347 7.864 -23.930 31.163 hybrid contribution -0.827 0.333 1.003 1.342 sum 17.521 8.196 -22.927 29.997 Atomic orbital electron populations 1.23995 0.96332 1.02316 1.00831 1.23051 0.95960 0.99177 1.00112 1.20598 0.96781 0.95645 0.96849 1.22225 0.95392 1.01384 0.91273 1.21146 0.78655 0.78559 0.90843 1.90687 1.65023 1.49760 1.41765 1.45836 1.37665 1.36514 1.15847 1.20382 0.93420 0.98045 0.86855 1.22831 0.92634 0.99039 1.02716 1.23061 0.97303 0.97695 0.97633 1.20032 0.93946 0.95283 0.86936 1.42586 1.65476 1.04504 1.27320 1.19031 1.26417 0.88323 1.03749 0.93164 1.25626 1.00252 1.02281 0.97510 1.69904 1.42584 1.32682 1.18254 0.85287 0.79034 0.79766 0.76956 1.19788 1.22082 1.17380 1.22940 0.96323 0.96647 1.00727 1.22829 0.98908 0.94320 1.00252 1.22927 0.92981 0.97519 1.01750 0.87912 0.88912 0.87305 0.89724 0.86918 0.74699 0.92560 0.92323 0.82691 0.84550 0.95378 0.95224 0.79714 0.93132 0.90422 0.91616 0.90606 0.87495 0.91001 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.59 14.32 67.78 0.97 -2.62 16 2 C -0.17 -2.72 8.85 25.64 0.23 -2.50 16 3 C -0.06 -0.73 5.02 29.85 0.15 -0.58 16 4 C -0.10 -1.64 0.86 -52.40 -0.05 -1.68 16 5 C 0.52 13.35 6.81 87.66 0.60 13.94 16 6 O -0.59 -21.78 15.89 -3.03 -0.05 -21.83 16 7 N -0.71 -15.13 5.36 -466.80 -2.50 -17.63 16 8 C 0.14 3.74 5.76 85.63 0.49 4.23 16 9 C -0.15 -3.42 9.63 25.64 0.25 -3.17 16 10 C -0.14 -3.82 9.63 25.64 0.25 -3.57 16 11 C 0.16 6.48 6.34 85.63 0.54 7.02 16 12 N -0.75 -36.65 5.40 -347.17 -1.87 -38.52 16 13 C -0.24 -14.66 10.47 84.03 0.88 -13.78 16 14 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 16 N -0.98 -64.96 13.97 21.65 0.30 -64.66 16 17 Si 0.96 46.11 27.74 68.60 1.90 48.02 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 21 C -0.13 -2.26 6.82 31.12 0.21 -2.05 16 22 C -0.13 -1.32 7.73 31.12 0.24 -1.08 16 23 C -0.11 -1.32 7.17 31.12 0.22 -1.10 16 24 H 0.10 1.70 7.84 -2.91 -0.02 1.68 16 25 H 0.09 1.73 8.06 -2.92 -0.02 1.71 16 26 H 0.11 1.80 6.70 -2.91 -0.02 1.78 16 27 H 0.08 0.81 6.44 -2.39 -0.02 0.79 16 28 H 0.11 0.75 7.38 -2.39 -0.02 0.73 16 29 H 0.42 5.71 7.22 -92.71 -0.67 5.04 16 30 H 0.06 1.94 5.31 -2.38 -0.01 1.93 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 1.27 5.31 -2.38 -0.01 1.26 16 36 H 0.37 16.71 5.52 -92.72 -0.51 16.19 16 37 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 38 H 0.08 1.27 6.40 -2.39 -0.02 1.25 16 39 H 0.07 1.56 7.39 -2.39 -0.02 1.54 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.66 7.70 -2.38 -0.02 0.64 16 42 H 0.07 1.06 8.09 -2.39 -0.02 1.05 16 43 H 0.10 0.64 8.10 -2.39 -0.02 0.62 16 Total: -1.00 -79.35 348.34 3.00 -76.35 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.23 Total: 28.71 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.45 Total: -10.44 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -4.07 Total: -120.81 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.02 kcal Total: -79.35 3.00 -76.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497670957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.984 kcal (2) G-P(sol) polarization free energy of solvation -79.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds