Wall clock time and date at job start Tue Mar 31 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47097 * 288.07044 * 3 2 1 5 5 C 1.53002 * 109.46997 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46997 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47436 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99561 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00159 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99676 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46759 * 180.02562 * 11 10 8 13 13 H 1.09003 * 112.96291 * 306.67642 * 12 11 10 14 14 C 1.53951 * 113.76686 * 175.00021 * 12 11 10 15 15 C 1.53951 * 86.28700 * 222.08919 * 14 12 11 16 16 N 1.47572 * 113.77082 * 78.50509 * 12 11 10 17 17 C 1.36939 * 134.49497 * 318.93891 * 16 12 11 18 18 H 1.08001 * 119.99841 * 7.05606 * 17 16 12 19 19 C 1.38815 * 120.00055 * 187.05748 * 17 16 12 20 20 N 1.31616 * 120.00062 * 7.60718 * 19 17 16 21 21 Si 1.86797 * 119.99747 * 187.60907 * 19 17 16 22 22 H 1.48504 * 109.47063 * 94.81145 * 21 19 17 23 23 H 1.48501 * 109.47465 * 214.81093 * 21 19 17 24 24 H 1.48503 * 109.47417 * 334.81133 * 21 19 17 25 25 H 4.44648 * 5.63370 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47504 * 168.06678 * 3 2 1 27 27 H 1.09003 * 109.47005 * 48.06799 * 3 2 1 28 28 H 1.09002 * 109.47039 * 60.00188 * 4 3 2 29 29 H 1.08996 * 109.47128 * 300.00106 * 4 3 2 30 30 H 1.09002 * 109.46868 * 60.00335 * 5 4 3 31 31 H 1.09003 * 109.47260 * 299.99850 * 5 4 3 32 32 H 1.09003 * 109.46993 * 300.00014 * 6 5 4 33 33 H 1.08997 * 109.47242 * 59.99725 * 6 5 4 34 34 H 1.09003 * 109.46806 * 299.99682 * 7 6 5 35 35 H 1.08997 * 109.47624 * 59.99512 * 7 6 5 36 36 H 0.97000 * 120.00173 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47136 * 299.99870 * 11 10 8 38 38 H 1.08993 * 109.47285 * 60.00223 * 11 10 8 39 39 H 1.09000 * 113.74186 * 336.43275 * 14 12 11 40 40 H 1.08995 * 113.74049 * 107.63804 * 14 12 11 41 41 H 1.09000 * 113.76659 * 137.91146 * 15 14 12 42 42 H 1.08996 * 113.76819 * 269.30432 * 15 14 12 43 43 H 0.96997 * 119.99911 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4466 1.3714 5 6 4.6862 -0.4465 1.3711 6 6 5.1964 -0.8931 2.7427 7 6 6.7263 -0.8924 2.7427 8 6 7.2289 -1.3329 4.0935 9 8 6.4409 -1.6187 4.9699 10 7 8.5540 -1.4092 4.3274 11 6 9.0425 -1.8369 5.6407 12 6 10.5725 -1.8363 5.6406 13 1 10.9980 -2.4158 4.8213 14 6 11.1931 -2.1541 7.0132 15 6 12.1959 -1.0263 6.7091 16 7 11.1668 -0.4944 5.7947 17 6 10.8792 0.7462 5.2913 18 1 9.9810 0.8987 4.7113 19 6 11.7420 1.8079 5.5265 20 7 12.9063 1.5946 6.1020 21 14 11.2506 3.5393 5.0263 22 1 10.6395 4.2352 6.1872 23 1 12.4539 4.2857 4.5790 24 1 10.2676 3.4734 3.9152 25 1 -1.0500 0.0001 0.0002 26 1 3.0089 1.0062 -0.2125 27 1 3.0096 -0.6859 -0.7645 28 1 2.7933 -1.4522 1.5838 29 1 2.7925 0.2399 2.1359 30 1 5.0494 0.5590 1.1586 31 1 5.0495 -1.1333 0.6066 32 1 4.8331 -0.2059 3.5069 33 1 4.8331 -1.8984 2.9558 34 1 7.0899 -1.5794 1.9785 35 1 7.0893 0.1130 2.5298 36 1 9.1842 -1.1802 3.6265 37 1 8.6793 -1.1497 6.4049 38 1 8.6792 -2.8422 5.8538 39 1 10.5330 -1.9396 7.8536 40 1 11.6470 -3.1434 7.0711 41 1 12.4021 -0.3799 7.5622 42 1 13.0996 -1.3664 6.2034 43 1 13.5094 2.3364 6.2660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499037933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:38 Heat of formation + Delta-G solvation = 38.589279 kcal Electronic energy + Delta-G solvation = -20723.523794 eV Core-core repulsion = 17577.985993 eV Total energy + Delta-G solvation = -3145.537801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.44477 -37.95675 -36.64426 -34.14004 -33.89633 -32.20765 -31.34908 -28.48785 -27.87886 -26.73881 -23.38270 -23.31570 -21.89486 -21.13010 -20.02486 -19.06601 -18.28913 -17.03378 -16.29789 -16.21287 -15.61480 -15.39303 -14.92973 -14.56357 -14.11002 -13.89089 -13.72161 -13.69001 -13.19226 -12.99419 -12.41922 -12.17160 -11.82015 -11.57786 -11.41295 -11.25943 -11.17060 -11.15921 -11.04371 -10.77436 -10.64864 -10.52703 -10.37707 -10.34781 -10.07196 -9.76619 -9.61577 -9.27739 -8.78228 -8.54508 -6.91467 -5.80364 -3.11137 2.55184 2.58278 3.00393 3.36371 3.41364 3.43740 3.59585 4.09176 4.41698 4.72431 4.72925 4.82678 5.04367 5.08241 5.14578 5.25780 5.37819 5.40518 5.46054 5.58182 5.60775 5.65484 5.69684 5.76713 5.82740 5.85002 5.91328 5.99720 6.10038 6.19815 6.31029 6.31712 6.39380 6.60457 6.73243 6.93033 7.20492 7.35989 7.39448 7.53629 7.93838 7.95661 8.61315 9.01975 9.68847 10.58555 11.37671 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003090 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.415515 B = 9058.363983 C =10298.932905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.142 4.142 8 C 0.508 3.492 9 O -0.555 6.555 10 N -0.716 5.716 11 C 0.123 3.877 12 C 0.125 3.875 13 H 0.049 0.951 14 C -0.157 4.157 15 C 0.165 3.835 16 N -0.602 5.602 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 -6.551 -10.069 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.140 4.140 7 C -0.182 4.182 8 C 0.294 3.706 9 O -0.434 6.434 10 N -0.366 5.366 11 C -0.002 4.002 12 C 0.017 3.983 13 H 0.066 0.934 14 C -0.196 4.196 15 C 0.040 3.960 16 N -0.328 5.328 17 C -0.348 4.348 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.232 0.768 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.004 -6.409 -9.485 18.872 hybrid contribution 0.082 1.185 -0.720 1.389 sum -14.923 -5.224 -10.205 18.818 Atomic orbital electron populations 1.24908 0.96011 1.01514 1.01089 1.23263 0.94726 1.00104 1.00243 1.18815 0.84511 1.02931 0.98969 1.21546 0.95689 1.02204 0.95772 1.21635 0.94575 1.01959 0.97657 1.21308 0.93126 1.02813 0.96797 1.21683 0.97673 1.03521 0.95329 1.20654 0.82453 0.77497 0.90016 1.90659 1.55481 1.50211 1.47025 1.46023 1.06736 1.67919 1.15936 1.21722 0.94981 0.98902 0.84547 1.22491 0.90851 0.88913 0.96000 0.93414 1.23773 1.00234 0.98789 0.96811 1.22065 0.90756 0.89975 0.93190 1.46169 1.32402 1.00829 1.53386 1.18964 1.03852 0.83367 1.28638 0.90328 1.24802 0.95860 0.98097 1.01645 1.69843 1.08435 1.30259 1.47982 0.86179 0.77204 0.84754 0.78053 1.21620 1.21780 1.20651 0.76767 0.89503 0.89565 0.91501 0.91423 0.91564 0.91687 0.91172 0.91306 0.89224 0.88883 0.76295 0.91172 0.92322 0.90556 0.92710 0.92156 0.95020 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.88 19.25 29.55 0.57 -1.32 16 2 C -0.18 -1.75 13.34 -37.12 -0.50 -2.24 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.95 5.17 -26.73 -0.14 -1.09 16 5 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 6 C -0.10 -1.13 4.50 -26.73 -0.12 -1.25 16 7 C -0.14 -1.66 5.70 -27.89 -0.16 -1.82 16 8 C 0.51 8.22 7.83 -10.99 -0.09 8.14 16 9 O -0.55 -10.92 15.98 5.56 0.09 -10.83 16 10 N -0.72 -11.84 5.51 -60.29 -0.33 -12.17 16 11 C 0.12 2.22 5.54 -4.04 -0.02 2.20 16 12 C 0.12 2.39 4.33 -66.86 -0.29 2.10 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.16 -2.84 7.86 -25.80 -0.20 -3.05 16 15 C 0.17 3.78 7.31 -2.97 -0.02 3.75 16 16 N -0.60 -14.57 3.56 -170.74 -0.61 -15.17 16 17 C -0.22 -5.87 10.49 -15.06 -0.16 -6.03 16 18 H 0.08 2.01 7.80 -52.49 -0.41 1.61 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.88 11.76 55.49 0.65 -26.23 16 21 Si 0.91 21.87 29.56 -169.99 -5.02 16.84 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.22 1.13 7.80 -54.09 -0.42 0.71 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 6.25 8.47 -40.82 -0.35 5.90 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.51 7.69 -51.93 -0.40 1.11 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -32.53 365.66 -8.71 -41.24 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.47 Total: 3.15 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.53 Total: -2.34 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.29 Total: -53.57 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.53 -8.71 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499037933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.825 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds