Wall clock time and date at job start Tue Mar 31 2020 00:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47097 * 288.07044 * 3 2 1 5 5 C 1.53002 * 109.46997 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46997 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47436 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99561 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00159 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99676 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46759 * 180.02562 * 11 10 8 13 13 H 1.09003 * 112.96291 * 306.67642 * 12 11 10 14 14 C 1.53951 * 113.76686 * 175.00021 * 12 11 10 15 15 C 1.53951 * 86.28700 * 222.08919 * 14 12 11 16 16 N 1.47572 * 113.77082 * 78.50509 * 12 11 10 17 17 C 1.36939 * 134.49497 * 318.93891 * 16 12 11 18 18 H 1.08001 * 119.99841 * 7.05606 * 17 16 12 19 19 C 1.38815 * 120.00055 * 187.05748 * 17 16 12 20 20 N 1.31616 * 120.00062 * 7.60718 * 19 17 16 21 21 Si 1.86797 * 119.99747 * 187.60907 * 19 17 16 22 22 H 1.48504 * 109.47063 * 94.81145 * 21 19 17 23 23 H 1.48501 * 109.47465 * 214.81093 * 21 19 17 24 24 H 1.48503 * 109.47417 * 334.81133 * 21 19 17 25 25 H 4.44648 * 5.63370 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47504 * 168.06678 * 3 2 1 27 27 H 1.09003 * 109.47005 * 48.06799 * 3 2 1 28 28 H 1.09002 * 109.47039 * 60.00188 * 4 3 2 29 29 H 1.08996 * 109.47128 * 300.00106 * 4 3 2 30 30 H 1.09002 * 109.46868 * 60.00335 * 5 4 3 31 31 H 1.09003 * 109.47260 * 299.99850 * 5 4 3 32 32 H 1.09003 * 109.46993 * 300.00014 * 6 5 4 33 33 H 1.08997 * 109.47242 * 59.99725 * 6 5 4 34 34 H 1.09003 * 109.46806 * 299.99682 * 7 6 5 35 35 H 1.08997 * 109.47624 * 59.99512 * 7 6 5 36 36 H 0.97000 * 120.00173 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47136 * 299.99870 * 11 10 8 38 38 H 1.08993 * 109.47285 * 60.00223 * 11 10 8 39 39 H 1.09000 * 113.74186 * 336.43275 * 14 12 11 40 40 H 1.08995 * 113.74049 * 107.63804 * 14 12 11 41 41 H 1.09000 * 113.76659 * 137.91146 * 15 14 12 42 42 H 1.08996 * 113.76819 * 269.30432 * 15 14 12 43 43 H 0.96997 * 119.99911 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4466 1.3714 5 6 4.6862 -0.4465 1.3711 6 6 5.1964 -0.8931 2.7427 7 6 6.7263 -0.8924 2.7427 8 6 7.2289 -1.3329 4.0935 9 8 6.4409 -1.6187 4.9699 10 7 8.5540 -1.4092 4.3274 11 6 9.0425 -1.8369 5.6407 12 6 10.5725 -1.8363 5.6406 13 1 10.9980 -2.4158 4.8213 14 6 11.1931 -2.1541 7.0132 15 6 12.1959 -1.0263 6.7091 16 7 11.1668 -0.4944 5.7947 17 6 10.8792 0.7462 5.2913 18 1 9.9810 0.8987 4.7113 19 6 11.7420 1.8079 5.5265 20 7 12.9063 1.5946 6.1020 21 14 11.2506 3.5393 5.0263 22 1 10.6395 4.2352 6.1872 23 1 12.4539 4.2857 4.5790 24 1 10.2676 3.4734 3.9152 25 1 -1.0500 0.0001 0.0002 26 1 3.0089 1.0062 -0.2125 27 1 3.0096 -0.6859 -0.7645 28 1 2.7933 -1.4522 1.5838 29 1 2.7925 0.2399 2.1359 30 1 5.0494 0.5590 1.1586 31 1 5.0495 -1.1333 0.6066 32 1 4.8331 -0.2059 3.5069 33 1 4.8331 -1.8984 2.9558 34 1 7.0899 -1.5794 1.9785 35 1 7.0893 0.1130 2.5298 36 1 9.1842 -1.1802 3.6265 37 1 8.6793 -1.1497 6.4049 38 1 8.6792 -2.8422 5.8538 39 1 10.5330 -1.9396 7.8536 40 1 11.6470 -3.1434 7.0711 41 1 12.4021 -0.3799 7.5622 42 1 13.0996 -1.3664 6.2034 43 1 13.5094 2.3364 6.2660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499037933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:37 Heat of formation + Delta-G solvation = 19.031447 kcal Electronic energy + Delta-G solvation = -20724.371885 eV Core-core repulsion = 17577.985993 eV Total energy + Delta-G solvation = -3146.385893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79297 -39.58008 -37.36906 -35.46218 -34.78805 -34.19613 -32.15242 -29.95933 -29.55427 -27.76817 -25.28812 -24.39944 -23.21109 -21.90307 -21.36031 -20.72207 -18.88571 -18.69810 -17.71360 -17.22227 -16.99171 -16.91544 -16.17987 -15.76586 -15.50473 -15.13987 -15.03939 -14.60062 -14.43055 -14.35568 -13.63835 -13.32787 -13.07033 -12.98834 -12.95662 -12.67040 -12.62166 -12.38571 -12.23752 -12.06348 -11.92551 -11.86569 -11.51248 -11.41414 -11.34550 -11.06288 -10.96367 -10.80604 -10.67985 -9.96046 -8.88471 -7.88229 -5.18263 1.44237 1.46965 1.54105 1.73641 1.88507 1.92573 2.33629 2.49570 3.34059 3.38681 3.51618 3.83250 3.98037 4.01433 4.04448 4.14995 4.28772 4.31342 4.36888 4.56117 4.63682 4.69656 4.74303 4.75193 4.87177 4.88660 4.95852 4.99725 5.05831 5.09606 5.13133 5.24143 5.28223 5.32333 5.44935 5.50073 5.55575 5.59631 5.75046 5.96661 6.65542 6.72174 6.95740 7.33737 7.65990 8.61717 9.30237 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003090 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.415515 B = 9058.363983 C =10298.932905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.217 4.217 3 C -0.015 4.015 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.100 4.100 7 C -0.134 4.134 8 C 0.502 3.498 9 O -0.594 6.594 10 N -0.716 5.716 11 C 0.132 3.868 12 C 0.132 3.868 13 H 0.069 0.931 14 C -0.132 4.132 15 C 0.157 3.843 16 N -0.629 5.629 17 C -0.213 4.213 18 H 0.087 0.913 19 C -0.072 4.072 20 N -0.955 5.955 21 Si 0.966 3.034 22 H -0.297 1.297 23 H -0.297 1.297 24 H -0.262 1.262 25 H 0.240 0.760 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.409 0.591 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 -7.461 -11.990 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.217 4.217 3 C -0.051 4.051 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.173 4.173 8 C 0.291 3.709 9 O -0.476 6.476 10 N -0.366 5.366 11 C 0.007 3.993 12 C 0.026 3.974 13 H 0.087 0.913 14 C -0.171 4.171 15 C 0.031 3.969 16 N -0.355 5.355 17 C -0.342 4.342 18 H 0.104 0.896 19 C -0.265 4.265 20 N -0.605 5.605 21 Si 0.796 3.204 22 H -0.225 1.225 23 H -0.224 1.224 24 H -0.186 1.186 25 H 0.256 0.744 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.170 -7.346 -11.438 21.125 hybrid contribution 0.375 1.380 -0.092 1.433 sum -15.795 -5.966 -11.531 20.446 Atomic orbital electron populations 1.25704 0.97055 1.00824 1.00286 1.23901 0.95853 1.00871 1.01059 1.18871 0.83715 1.03814 0.98701 1.21482 0.95858 1.01530 0.96007 1.21565 0.94238 1.02845 0.96217 1.21272 0.92851 1.01730 0.97928 1.21737 0.97769 1.04722 0.93105 1.21477 0.81804 0.76375 0.91282 1.90643 1.56303 1.51921 1.48719 1.46040 1.07247 1.67875 1.15436 1.21485 0.94044 0.99090 0.84705 1.22647 0.91336 0.86239 0.97146 0.91338 1.23574 0.98230 0.98930 0.96323 1.22039 0.91500 0.91351 0.91991 1.46525 1.33191 1.02051 1.53739 1.19333 1.03390 0.84632 1.26802 0.89581 1.25561 0.96261 1.01610 1.03022 1.70012 1.09591 1.30584 1.50306 0.85226 0.76818 0.80538 0.77826 1.22462 1.22442 1.18616 0.74354 0.88606 0.88142 0.92121 0.92728 0.90679 0.89769 0.93445 0.92354 0.86099 0.87681 0.75532 0.94284 0.90498 0.90277 0.88736 0.95537 0.95849 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.55 19.25 74.32 1.43 -2.12 16 2 C -0.22 -3.89 13.34 31.12 0.42 -3.47 16 3 C -0.01 -0.20 5.70 28.79 0.16 -0.04 16 4 C -0.11 -1.70 5.17 30.60 0.16 -1.55 16 5 C -0.11 -1.57 5.21 30.60 0.16 -1.41 16 6 C -0.10 -2.05 4.50 30.59 0.14 -1.92 16 7 C -0.13 -2.78 5.70 29.85 0.17 -2.61 16 8 C 0.50 15.49 7.83 87.66 0.69 16.17 16 9 O -0.59 -23.10 15.98 -3.03 -0.05 -23.15 16 10 N -0.72 -22.25 5.51 -463.05 -2.55 -24.81 16 11 C 0.13 4.53 5.54 86.38 0.48 5.01 16 12 C 0.13 4.77 4.33 45.10 0.20 4.97 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.13 -4.50 7.86 31.26 0.25 -4.25 16 15 C 0.16 7.17 7.31 86.48 0.63 7.80 16 16 N -0.63 -30.12 3.56 -694.11 -2.47 -32.59 16 17 C -0.21 -11.27 10.49 84.03 0.88 -10.39 16 18 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 19 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 20 N -0.96 -57.33 11.76 21.65 0.25 -57.07 16 21 Si 0.97 45.27 29.56 68.60 2.03 47.29 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H 0.24 2.09 7.80 -4.42 -0.03 2.06 16 26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.06 1.31 8.10 -2.39 -0.02 1.30 16 34 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 11.67 8.47 -92.71 -0.79 10.89 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 40 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.03 1.37 7.69 -2.39 -0.02 1.35 16 42 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -71.89 365.66 3.61 -68.28 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.18 Total: 19.41 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.22 Total: 2.64 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.77 Total: -114.47 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.89 3.61 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499037933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.309 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds