Wall clock time and date at job start Tue Mar 31 2020 00:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 C 1.47199 * 109.47051 * 119.99681 * 2 1 3 5 5 C 2.64598 * 109.47012 * 119.99857 * 2 1 3 6 6 C 4.07799 * 109.47071 * 119.99934 * 2 1 3 7 7 O 1.21617 * 120.00113 * 299.74513 * 6 5 4 8 8 N 1.34777 * 119.99771 * 119.74622 * 6 5 4 9 9 C 1.46932 * 120.62883 * 180.02562 * 8 6 5 10 10 C 1.53192 * 108.77844 * 126.36628 * 9 8 6 11 11 C 1.53045 * 109.30943 * 54.63390 * 10 9 8 12 12 C 1.53003 * 109.45779 * 178.62811 * 11 10 9 13 13 N 1.46490 * 109.46384 * 58.65283 * 11 10 9 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.53044 * 109.52582 * 298.63661 * 11 10 9 23 23 C 1.46920 * 120.63159 * 359.97193 * 8 6 5 24 24 H 1.08997 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47250 * 299.99951 * 1 2 3 26 26 H 1.08994 * 109.47242 * 60.00181 * 1 2 3 27 27 H 1.09005 * 109.47250 * 240.00049 * 2 1 3 28 28 H 1.08998 * 109.47191 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47328 * 299.99787 * 3 2 1 30 30 H 1.09004 * 109.47541 * 59.99939 * 3 2 1 31 31 H 1.08996 * 109.58846 * 6.57565 * 9 8 6 32 32 H 1.09005 * 109.69444 * 246.22254 * 9 8 6 33 33 H 1.08995 * 109.49437 * 294.68286 * 10 9 8 34 34 H 1.08996 * 109.52274 * 174.59662 * 10 9 8 35 35 H 1.08997 * 109.46965 * 300.02851 * 12 11 10 36 36 H 1.09002 * 109.46920 * 60.02578 * 12 11 10 37 37 H 1.08994 * 109.46997 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00577 * 359.97352 * 13 11 10 39 39 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 40 40 H 1.09000 * 109.49970 * 181.31217 * 22 11 10 41 41 H 1.09001 * 109.50257 * 301.41366 * 22 11 10 42 42 H 1.08998 * 109.58779 * 353.42447 * 23 8 6 43 43 H 1.09004 * 109.58787 * 113.70161 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 1.2019 5 6 2.4119 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3297 7 8 2.2342 -1.9011 4.3542 8 7 4.0645 -2.5813 3.2948 9 6 4.5671 -3.2791 4.4861 10 6 4.8784 -4.7317 4.1121 11 6 5.8376 -4.7529 2.9197 12 6 6.1777 -6.2018 2.5649 13 7 7.0658 -4.0345 3.2684 14 6 8.0769 -3.9222 2.3519 15 1 7.9688 -4.3627 1.3718 16 6 9.2410 -3.2420 2.6824 17 7 9.3730 -2.7054 3.8771 18 14 10.6201 -3.0881 1.4319 19 1 11.5476 -4.2392 1.5738 20 1 10.0473 -3.0799 0.0618 21 1 11.3618 -1.8230 1.6660 22 6 5.1747 -4.0758 1.7179 23 6 4.8667 -2.6164 2.0644 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.8092 -3.2577 5.2691 32 1 5.4744 -2.7909 4.8423 33 1 3.9545 -5.2445 3.8450 34 1 5.3417 -5.2350 4.9607 35 1 6.6502 -6.6840 3.4206 36 1 5.2640 -6.7364 2.3054 37 1 6.8612 -6.2171 1.7160 38 1 7.1628 -3.6385 4.1485 39 1 8.6567 -2.7850 4.5263 40 1 5.8491 -4.1118 0.8623 41 1 4.2479 -4.5949 1.4733 42 1 4.3064 -2.1578 1.2496 43 1 5.7978 -2.0713 2.2196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502779092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:43 Heat of formation + Delta-G solvation = 16.357373 kcal Electronic energy + Delta-G solvation = -22129.300152 eV Core-core repulsion = 18982.798303 eV Total energy + Delta-G solvation = -3146.501849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03315 -37.89856 -36.54662 -34.65982 -32.73610 -32.02176 -30.66885 -28.79597 -27.84448 -27.48311 -24.69260 -23.62660 -22.95913 -22.50163 -20.82467 -18.89795 -17.60589 -17.01564 -16.51588 -15.80852 -15.37377 -14.93273 -14.68440 -14.23471 -13.80487 -13.74713 -13.63567 -13.57104 -13.14357 -12.61554 -12.53602 -12.37409 -12.19275 -11.71721 -11.67519 -11.62343 -11.41390 -11.30697 -10.84621 -10.80130 -10.58587 -10.41932 -10.33151 -10.28570 -10.02464 -9.97590 -9.77405 -9.11712 -8.96728 -8.34992 -7.05672 -6.10825 -3.11645 1.65964 2.33859 3.15020 3.49052 3.53018 3.63489 3.66977 4.04753 4.63755 4.68820 4.83468 4.84085 5.12950 5.18700 5.24488 5.31661 5.35889 5.48363 5.50247 5.54407 5.58583 5.66857 5.68829 5.71622 5.90708 5.93405 5.95349 5.97884 6.07553 6.16129 6.30475 6.34686 6.42486 6.49456 6.63622 6.74906 6.92073 6.98362 7.25719 7.57981 7.80042 8.24146 8.73703 9.19954 10.06633 10.22300 11.36961 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.004835 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.989485 B = 5790.143301 C = 6663.987955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.011 3.989 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.206 4.206 6 C 0.627 3.373 7 O -0.541 6.541 8 N -0.587 5.587 9 C 0.118 3.882 10 C -0.131 4.131 11 C 0.202 3.798 12 C -0.148 4.148 13 N -0.728 5.728 14 C -0.324 4.324 15 H 0.065 0.935 16 C -0.044 4.044 17 N -0.944 5.944 18 Si 1.078 2.922 19 H -0.297 1.297 20 H -0.296 1.296 21 H -0.289 1.289 22 C -0.133 4.133 23 C 0.117 3.883 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.367 0.633 39 H 0.255 0.745 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.564 2.135 -7.897 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 C -0.204 4.204 4 C -0.093 4.093 5 C -0.209 4.209 6 C 0.415 3.585 7 O -0.421 6.421 8 N -0.318 5.318 9 C -0.004 4.004 10 C -0.170 4.170 11 C 0.111 3.889 12 C -0.208 4.208 13 N -0.372 5.372 14 C -0.455 4.455 15 H 0.083 0.917 16 C -0.242 4.242 17 N -0.590 5.590 18 Si 0.910 3.090 19 H -0.225 1.225 20 H -0.222 1.222 21 H -0.215 1.215 22 C -0.173 4.173 23 C -0.005 4.005 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.342 2.662 -7.817 15.691 hybrid contribution -1.336 -0.646 0.385 1.533 sum -14.678 2.015 -7.432 16.575 Atomic orbital electron populations 1.21847 0.93056 1.02725 1.02700 1.18466 0.96103 0.95269 0.90874 1.21841 1.02004 0.93814 1.02703 1.22549 0.97579 0.94590 0.94630 1.20734 1.02133 1.02339 0.95698 1.14809 0.80866 0.78395 0.84410 1.90802 1.57277 1.62355 1.31635 1.47968 1.19348 1.50415 1.14020 1.21615 0.99772 0.92274 0.86733 1.22125 0.99585 0.95675 0.99587 1.19475 0.86677 0.91351 0.91431 1.22187 0.99641 0.97101 1.01833 1.42518 1.14279 1.65148 1.15252 1.19941 0.96670 1.33115 0.95737 0.91683 1.25654 0.99325 0.98142 1.01035 1.70856 1.35300 1.47524 1.05311 0.83252 0.75616 0.76390 0.73791 1.22460 1.22239 1.21534 1.22278 0.99535 0.94744 1.00752 1.21742 0.95669 0.98642 0.84456 0.92063 0.91990 0.91315 0.88181 0.91757 0.91240 0.92019 0.89428 0.90566 0.91623 0.90594 0.93204 0.94511 0.92431 0.79917 0.93394 0.90434 0.93247 0.91292 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.15 37.16 0.34 -0.77 16 2 C 0.01 0.10 3.30 -93.41 -0.31 -0.21 16 3 C -0.15 -1.18 9.15 37.16 0.34 -0.84 16 4 C -0.09 -1.21 12.50 -37.12 -0.46 -1.67 16 5 C -0.21 -3.32 11.57 -38.84 -0.45 -3.77 16 6 C 0.63 11.47 7.55 -14.33 -0.11 11.36 16 7 O -0.54 -11.21 16.50 5.26 0.09 -11.12 16 8 N -0.59 -10.29 2.97 -175.68 -0.52 -10.81 16 9 C 0.12 2.02 6.16 -3.71 -0.02 1.99 16 10 C -0.13 -2.14 4.96 -26.61 -0.13 -2.27 16 11 C 0.20 3.73 0.74 -131.78 -0.10 3.63 16 12 C -0.15 -2.62 8.44 37.16 0.31 -2.31 16 13 N -0.73 -16.51 4.14 -47.19 -0.20 -16.70 16 14 C -0.32 -8.30 8.68 -15.06 -0.13 -8.43 16 15 H 0.07 1.66 6.70 -52.49 -0.35 1.31 16 16 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 17 N -0.94 -28.04 13.70 55.49 0.76 -27.28 16 18 Si 1.08 25.08 29.92 -169.99 -5.09 20.00 16 19 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.30 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 C -0.13 -2.30 4.70 -26.64 -0.13 -2.42 16 23 C 0.12 2.03 6.06 -3.74 -0.02 2.01 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 32 H 0.08 1.39 6.94 -51.93 -0.36 1.03 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.09 7.27 -51.93 -0.38 0.72 16 38 H 0.37 8.77 5.30 -40.82 -0.22 8.55 16 39 H 0.25 7.45 6.77 -40.82 -0.28 7.18 16 40 H 0.08 1.42 7.31 -51.93 -0.38 1.04 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 43 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -30.98 346.06 -7.63 -38.61 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.92 Total: 7.10 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.96 Total: -5.00 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.04 Total: -54.79 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.98 -7.63 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502779092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.967 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds