Wall clock time and date at job start Tue Mar 31 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 C 1.47199 * 109.47051 * 119.99681 * 2 1 3 5 5 C 2.64598 * 109.47012 * 119.99857 * 2 1 3 6 6 C 4.07799 * 109.47071 * 119.99934 * 2 1 3 7 7 O 1.21617 * 120.00113 * 299.74513 * 6 5 4 8 8 N 1.34777 * 119.99771 * 119.74622 * 6 5 4 9 9 C 1.46932 * 120.62883 * 180.02562 * 8 6 5 10 10 C 1.53192 * 108.77844 * 126.36628 * 9 8 6 11 11 C 1.53045 * 109.30943 * 54.63390 * 10 9 8 12 12 C 1.53003 * 109.45779 * 178.62811 * 11 10 9 13 13 N 1.46490 * 109.46384 * 58.65283 * 11 10 9 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.53044 * 109.52582 * 298.63661 * 11 10 9 23 23 C 1.46920 * 120.63159 * 359.97193 * 8 6 5 24 24 H 1.08997 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47250 * 299.99951 * 1 2 3 26 26 H 1.08994 * 109.47242 * 60.00181 * 1 2 3 27 27 H 1.09005 * 109.47250 * 240.00049 * 2 1 3 28 28 H 1.08998 * 109.47191 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47328 * 299.99787 * 3 2 1 30 30 H 1.09004 * 109.47541 * 59.99939 * 3 2 1 31 31 H 1.08996 * 109.58846 * 6.57565 * 9 8 6 32 32 H 1.09005 * 109.69444 * 246.22254 * 9 8 6 33 33 H 1.08995 * 109.49437 * 294.68286 * 10 9 8 34 34 H 1.08996 * 109.52274 * 174.59662 * 10 9 8 35 35 H 1.08997 * 109.46965 * 300.02851 * 12 11 10 36 36 H 1.09002 * 109.46920 * 60.02578 * 12 11 10 37 37 H 1.08994 * 109.46997 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00577 * 359.97352 * 13 11 10 39 39 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 40 40 H 1.09000 * 109.49970 * 181.31217 * 22 11 10 41 41 H 1.09001 * 109.50257 * 301.41366 * 22 11 10 42 42 H 1.08998 * 109.58779 * 353.42447 * 23 8 6 43 43 H 1.09004 * 109.58787 * 113.70161 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 1.2019 5 6 2.4119 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3297 7 8 2.2342 -1.9011 4.3542 8 7 4.0645 -2.5813 3.2948 9 6 4.5671 -3.2791 4.4861 10 6 4.8784 -4.7317 4.1121 11 6 5.8376 -4.7529 2.9197 12 6 6.1777 -6.2018 2.5649 13 7 7.0658 -4.0345 3.2684 14 6 8.0769 -3.9222 2.3519 15 1 7.9688 -4.3627 1.3718 16 6 9.2410 -3.2420 2.6824 17 7 9.3730 -2.7054 3.8771 18 14 10.6201 -3.0881 1.4319 19 1 11.5476 -4.2392 1.5738 20 1 10.0473 -3.0799 0.0618 21 1 11.3618 -1.8230 1.6660 22 6 5.1747 -4.0758 1.7179 23 6 4.8667 -2.6164 2.0644 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.8092 -3.2577 5.2691 32 1 5.4744 -2.7909 4.8423 33 1 3.9545 -5.2445 3.8450 34 1 5.3417 -5.2350 4.9607 35 1 6.6502 -6.6840 3.4206 36 1 5.2640 -6.7364 2.3054 37 1 6.8612 -6.2171 1.7160 38 1 7.1628 -3.6385 4.1485 39 1 8.6567 -2.7850 4.5263 40 1 5.8491 -4.1118 0.8623 41 1 4.2479 -4.5949 1.4733 42 1 4.3064 -2.1578 1.2496 43 1 5.7978 -2.0713 2.2196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502779092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:42 Heat of formation + Delta-G solvation = -1.367679 kcal Electronic energy + Delta-G solvation = -22130.068768 eV Core-core repulsion = 18982.798303 eV Total energy + Delta-G solvation = -3147.270465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47119 -39.41194 -37.36899 -36.29496 -34.48260 -33.22560 -32.01376 -30.60593 -29.30571 -28.07938 -26.09670 -25.41948 -24.40154 -23.61946 -22.05979 -20.40449 -19.17436 -18.76375 -17.77148 -17.00120 -16.84465 -16.35778 -15.89529 -15.56399 -15.39143 -15.15896 -15.07237 -14.79496 -14.31131 -14.21357 -13.74182 -13.30000 -13.11800 -12.96833 -12.85483 -12.75798 -12.63228 -12.49704 -12.35266 -12.30201 -12.23051 -11.90895 -11.80478 -11.56433 -11.50392 -11.37316 -11.12715 -10.96500 -10.83539 -9.83841 -9.00234 -8.25334 -5.19342 0.40719 1.17757 1.61048 1.70357 1.83455 1.86658 2.36197 2.76520 2.91313 3.50756 3.64815 3.75765 3.82614 4.01302 4.04031 4.06169 4.14364 4.16794 4.28910 4.42078 4.51299 4.55446 4.66847 4.76214 4.76878 4.89955 4.91359 4.92443 4.93525 4.97764 5.04656 5.08795 5.19069 5.22853 5.30545 5.32911 5.46494 5.53976 5.75700 6.14101 6.17686 6.61056 6.83313 7.20080 8.11018 8.23812 9.26310 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.004835 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.989485 B = 5790.143301 C = 6663.987955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.005 3.995 3 C -0.146 4.146 4 C -0.044 4.044 5 C -0.270 4.270 6 C 0.627 3.373 7 O -0.575 6.575 8 N -0.586 5.586 9 C 0.119 3.881 10 C -0.121 4.121 11 C 0.192 3.808 12 C -0.142 4.142 13 N -0.736 5.736 14 C -0.300 4.300 15 H 0.070 0.930 16 C -0.107 4.107 17 N -0.984 5.984 18 Si 1.120 2.880 19 H -0.292 1.292 20 H -0.271 1.271 21 H -0.302 1.302 22 C -0.126 4.126 23 C 0.126 3.874 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.357 0.643 39 H 0.242 0.758 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.301 1.770 -10.583 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 C -0.203 4.203 4 C -0.047 4.047 5 C -0.273 4.273 6 C 0.417 3.583 7 O -0.457 6.457 8 N -0.316 5.316 9 C -0.003 4.003 10 C -0.159 4.159 11 C 0.102 3.898 12 C -0.201 4.201 13 N -0.379 5.379 14 C -0.432 4.432 15 H 0.088 0.912 16 C -0.298 4.298 17 N -0.634 5.634 18 Si 0.947 3.053 19 H -0.219 1.219 20 H -0.196 1.196 21 H -0.229 1.229 22 C -0.166 4.166 23 C 0.004 3.996 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.190 0.810 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.118 2.259 -10.540 18.567 hybrid contribution -0.928 -0.515 1.151 1.565 sum -16.046 1.744 -9.389 18.672 Atomic orbital electron populations 1.21862 0.91573 1.02934 1.03729 1.18907 0.97234 0.95611 0.89563 1.21866 1.01467 0.93130 1.03801 1.23540 0.94824 0.92089 0.94227 1.20531 1.05036 1.04938 0.96818 1.15049 0.80547 0.77891 0.84767 1.90764 1.58218 1.63622 1.33118 1.47986 1.19273 1.50323 1.14026 1.21566 0.98960 0.92801 0.86998 1.22053 0.99848 0.95094 0.98926 1.19802 0.85558 0.91547 0.92906 1.22096 1.00758 0.96404 1.00806 1.42696 1.15266 1.65513 1.14415 1.20198 0.96625 1.30388 0.95982 0.91219 1.26826 1.02132 0.99054 1.01804 1.70962 1.35445 1.50470 1.06475 0.82688 0.73581 0.75713 0.73283 1.21938 1.19626 1.22882 1.22200 1.00284 0.94542 0.99563 1.21588 0.94394 0.98611 0.84981 0.92298 0.92883 0.88451 0.85674 0.92652 0.88316 0.92846 0.89105 0.92552 0.89531 0.90024 0.94014 0.91275 0.93953 0.80994 0.94708 0.91270 0.90702 0.89374 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.15 71.98 0.66 -1.05 16 2 C 0.00 0.07 3.30 -12.60 -0.04 0.03 16 3 C -0.15 -1.91 9.15 71.98 0.66 -1.25 16 4 C -0.04 -1.09 12.50 31.13 0.39 -0.70 16 5 C -0.27 -8.56 11.57 30.02 0.35 -8.21 16 6 C 0.63 23.12 7.55 85.49 0.65 23.77 16 7 O -0.57 -24.29 16.50 -4.08 -0.07 -24.35 16 8 N -0.59 -20.60 2.97 -827.97 -2.46 -23.06 16 9 C 0.12 4.11 6.16 86.36 0.53 4.64 16 10 C -0.12 -3.80 4.96 30.67 0.15 -3.65 16 11 C 0.19 6.85 0.74 3.64 0.00 6.85 16 12 C -0.14 -4.72 8.44 71.98 0.61 -4.11 16 13 N -0.74 -33.66 4.14 -303.23 -1.25 -34.92 16 14 C -0.30 -15.41 8.68 84.03 0.73 -14.69 16 15 H 0.07 3.48 6.70 -2.91 -0.02 3.46 16 16 C -0.11 -5.95 5.50 84.86 0.47 -5.49 16 17 N -0.98 -60.18 13.70 21.65 0.30 -59.88 16 18 Si 1.12 50.80 29.92 68.60 2.05 52.85 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 22 C -0.13 -4.13 4.70 30.65 0.14 -3.99 16 23 C 0.13 4.33 6.06 86.34 0.52 4.86 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 3.08 7.00 -2.39 -0.02 3.07 16 32 H 0.06 2.17 6.94 -2.38 -0.02 2.15 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.52 7.27 -2.39 -0.02 1.51 16 38 H 0.36 17.67 5.30 -92.71 -0.49 17.18 16 39 H 0.24 14.81 6.77 -92.71 -0.63 14.19 16 40 H 0.07 2.40 7.31 -2.39 -0.02 2.38 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 2.66 6.32 -2.39 -0.02 2.64 16 43 H 0.06 2.29 7.75 -2.38 -0.02 2.28 16 Total: -1.00 -68.63 346.06 5.03 -63.60 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.65 Total: 28.76 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.82 Total: -2.99 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -3.42 Total: -117.86 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.35 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -68.63 5.03 -63.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502779092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.233 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds