Wall clock time and date at job start Tue Mar 31 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47388 * 2 1 4 4 C 1.47202 * 109.47230 * 120.00363 * 2 1 3 5 5 C 2.64597 * 109.47205 * 120.00177 * 2 1 3 6 6 C 4.07795 * 109.47196 * 120.00075 * 2 1 3 7 7 O 1.21615 * 120.00001 * 99.02163 * 6 5 4 8 8 N 1.34778 * 120.00080 * 279.01785 * 6 5 4 9 9 C 1.48142 * 127.83780 * 359.97438 * 8 6 5 10 10 C 1.54387 * 104.61747 * 140.41212 * 9 8 6 11 11 H 1.09003 * 110.43473 * 142.78463 * 10 9 8 12 12 N 1.46501 * 110.34402 * 264.99590 * 10 9 8 13 13 C 1.36934 * 120.00027 * 270.53808 * 12 10 9 14 14 H 1.07999 * 120.00179 * 359.97438 * 13 12 10 15 15 C 1.38810 * 119.99870 * 180.02562 * 13 12 10 16 16 N 1.31623 * 120.00278 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00073 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47039 * 90.00665 * 17 15 13 19 19 H 1.48499 * 109.47426 * 210.00296 * 17 15 13 20 20 H 1.48501 * 109.47502 * 330.00563 * 17 15 13 21 21 C 1.54291 * 104.96157 * 23.86995 * 10 9 8 22 22 C 1.52997 * 110.34499 * 118.86803 * 21 10 9 23 23 C 1.52995 * 110.33972 * 241.02506 * 21 10 9 24 24 C 1.48313 * 127.76908 * 179.90810 * 8 6 5 25 25 H 1.08998 * 109.46825 * 300.00367 * 1 2 3 26 26 H 1.09008 * 109.46989 * 59.99624 * 1 2 3 27 27 H 1.08991 * 109.46890 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47335 * 240.00200 * 2 1 3 29 29 H 1.08999 * 109.46980 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46754 * 300.00532 * 3 2 1 31 31 H 1.08999 * 109.46719 * 59.99823 * 3 2 1 32 32 H 1.08997 * 110.40733 * 21.62802 * 9 8 6 33 33 H 1.09000 * 110.40739 * 259.19774 * 9 8 6 34 34 H 0.96998 * 119.99512 * 90.53935 * 12 10 9 35 35 H 0.96996 * 120.00374 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47153 * 181.47474 * 22 21 10 37 37 H 1.09001 * 109.46832 * 61.47665 * 22 21 10 38 38 H 1.09004 * 109.47261 * 301.47646 * 22 21 10 39 39 H 1.09000 * 109.47205 * 298.51933 * 23 21 10 40 40 H 1.09005 * 109.47310 * 58.52396 * 23 21 10 41 41 H 1.09004 * 109.47077 * 178.52249 * 23 21 10 42 42 H 1.08994 * 110.38948 * 100.79266 * 24 8 6 43 43 H 1.09001 * 110.50640 * 338.30238 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9224 3.3296 7 8 3.7173 -2.8071 3.2255 8 7 2.4212 -1.5772 4.5454 9 6 1.4209 -0.5342 4.8715 10 6 0.5577 -1.1582 5.9891 11 1 0.2780 -0.4009 6.7216 12 7 -0.6398 -1.7814 5.4198 13 6 -1.7842 -1.0465 5.2605 14 1 -1.8042 -0.0076 5.5549 15 6 -2.9189 -1.6372 4.7216 16 7 -4.0188 -0.9307 4.5680 17 14 -2.8845 -3.4342 4.2131 18 1 -3.2921 -4.2817 5.3624 19 1 -3.8244 -3.6471 3.0834 20 1 -1.5098 -3.8027 3.7894 21 6 1.4605 -2.2266 6.6402 22 6 1.6926 -1.8989 8.1165 23 6 0.8311 -3.6137 6.4968 24 6 2.7907 -2.1573 5.8594 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.8080 -0.3093 3.9986 33 1 1.9158 0.3675 5.2321 34 1 -0.6219 -2.7146 5.1558 35 1 -4.8116 -1.3434 4.1911 36 1 2.3525 -2.6473 8.5554 37 1 0.7386 -1.9017 8.6437 38 1 2.1522 -0.9142 8.2022 39 1 -0.1303 -3.6314 7.0100 40 1 0.6833 -3.8383 5.4404 41 1 1.4921 -4.3600 6.9378 42 1 3.5003 -1.5099 6.3743 43 1 3.2089 -3.1558 5.7320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507431523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:42 Heat of formation + Delta-G solvation = 28.627609 kcal Electronic energy + Delta-G solvation = -22418.043881 eV Core-core repulsion = 19272.074109 eV Total energy + Delta-G solvation = -3145.969772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.02849 -38.01744 -36.32818 -34.13779 -33.33862 -31.68948 -31.12335 -28.25566 -27.23021 -26.97792 -26.69842 -23.90599 -23.23263 -21.64825 -20.53427 -18.99595 -17.67687 -17.43513 -16.15705 -15.79280 -15.65051 -14.74290 -14.60717 -14.39340 -13.97014 -13.74498 -13.38127 -13.30114 -12.70606 -12.55590 -12.30009 -12.27102 -12.10435 -11.96940 -11.71142 -11.48562 -11.44647 -11.39213 -11.29240 -11.03437 -10.67367 -10.55446 -10.32041 -10.23823 -10.17051 -10.05128 -9.89889 -9.60770 -9.10972 -8.49860 -7.33052 -5.85273 -3.20963 1.78168 2.44663 3.22232 3.31746 3.36273 3.40585 3.75063 4.17630 4.52096 4.72193 4.90801 4.95295 4.97724 5.05601 5.10628 5.34217 5.43035 5.47060 5.56063 5.56744 5.67149 5.72182 5.74975 5.77657 5.82237 5.87168 5.92968 6.05167 6.08650 6.11252 6.12489 6.19744 6.28821 6.31691 6.38216 6.48767 6.58765 6.75920 7.43541 7.70391 7.90732 8.27325 8.34263 9.12062 9.84917 10.04371 11.32570 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.007971 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.054030 B = 3511.945177 C = 5189.717558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.011 3.989 3 C -0.144 4.144 4 C -0.078 4.078 5 C -0.214 4.214 6 C 0.653 3.347 7 O -0.542 6.542 8 N -0.604 5.604 9 C 0.072 3.928 10 C 0.180 3.820 11 H 0.080 0.920 12 N -0.741 5.741 13 C -0.248 4.248 14 H 0.092 0.908 15 C 0.012 3.988 16 N -0.930 5.930 17 Si 0.874 3.126 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.091 4.091 22 C -0.131 4.131 23 C -0.135 4.135 24 C 0.117 3.883 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.367 0.633 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.287 2.475 -1.807 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.007 4.007 3 C -0.201 4.201 4 C -0.080 4.080 5 C -0.217 4.217 6 C 0.443 3.557 7 O -0.422 6.422 8 N -0.336 5.336 9 C -0.054 4.054 10 C 0.068 3.932 11 H 0.098 0.902 12 N -0.384 5.384 13 C -0.378 4.378 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.577 5.577 17 Si 0.705 3.295 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.093 4.093 22 C -0.189 4.189 23 C -0.192 4.192 24 C -0.005 4.005 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.203 0.797 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.542 2.151 -1.943 12.872 hybrid contribution -0.186 -1.273 -0.525 1.389 sum 12.356 0.878 -2.468 12.630 Atomic orbital electron populations 1.21856 0.92251 1.03223 1.03195 1.18485 0.96594 0.94977 0.90654 1.21830 1.01286 0.94048 1.02978 1.22569 0.94902 0.94929 0.95641 1.20516 1.03285 1.01604 0.96260 1.14187 0.80508 0.81317 0.79696 1.90805 1.33827 1.31575 1.85977 1.48741 1.42293 1.37664 1.04874 1.23599 0.90026 0.89745 1.02023 1.21163 0.86233 0.93362 0.92438 0.90206 1.43081 1.08882 1.11126 1.75341 1.19078 0.87482 0.95847 1.35389 0.89021 1.24612 0.95781 0.97160 1.00926 1.69687 1.02008 1.35490 1.50483 0.86716 0.77223 0.87064 0.78538 1.20857 1.21591 1.20408 1.21827 0.94618 0.97260 0.95547 1.21785 1.02080 1.01002 0.94025 1.21755 1.01099 0.94574 1.01813 1.22515 0.96453 0.99587 0.81950 0.91189 0.91363 0.91926 0.88625 0.92291 0.91271 0.91735 0.89275 0.91686 0.79712 0.92994 0.92774 0.91695 0.92450 0.91249 0.92772 0.93069 0.90860 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.15 37.16 0.34 -1.47 16 2 C 0.01 0.13 3.30 -93.40 -0.31 -0.18 16 3 C -0.14 -1.39 9.15 37.16 0.34 -1.05 16 4 C -0.08 -1.23 12.56 -37.12 -0.47 -1.70 16 5 C -0.21 -3.89 12.50 -38.84 -0.49 -4.38 16 6 C 0.65 12.61 7.75 -14.33 -0.11 12.49 16 7 O -0.54 -11.65 17.35 5.26 0.09 -11.56 16 8 N -0.60 -10.41 3.32 -172.03 -0.57 -10.98 16 9 C 0.07 1.21 6.61 -2.41 -0.02 1.19 16 10 C 0.18 3.19 3.35 -66.53 -0.22 2.97 16 11 H 0.08 1.39 7.66 -51.93 -0.40 0.99 16 12 N -0.74 -16.56 4.40 -52.07 -0.23 -16.79 16 13 C -0.25 -6.59 10.44 -15.06 -0.16 -6.75 16 14 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 15 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 16 N -0.93 -28.15 13.97 55.49 0.78 -27.37 16 17 Si 0.87 21.89 27.73 -169.99 -4.71 17.18 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 21 C -0.09 -1.34 1.03 -153.10 -0.16 -1.50 16 22 C -0.13 -1.55 8.24 37.16 0.31 -1.24 16 23 C -0.13 -2.16 7.11 37.16 0.26 -1.89 16 24 C 0.12 1.71 6.15 -2.31 -0.01 1.70 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.72 7.35 -51.93 -0.38 1.34 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.37 8.40 2.95 -40.82 -0.12 8.28 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.07 1.17 7.84 -51.93 -0.41 0.77 16 40 H 0.05 0.99 6.88 -51.93 -0.36 0.63 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.90 7.85 -51.93 -0.41 0.50 16 43 H 0.08 1.23 7.60 -51.93 -0.39 0.83 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -32.13 352.54 -7.25 -39.38 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.13 Total: 6.41 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.78 Total: -1.58 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.02 Total: -55.14 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.13 -7.25 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507431523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.006 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds