Wall clock time and date at job start Tue Mar 31 2020 00:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47388 * 2 1 4 4 C 1.47202 * 109.47230 * 120.00363 * 2 1 3 5 5 C 2.64597 * 109.47205 * 120.00177 * 2 1 3 6 6 C 4.07795 * 109.47196 * 120.00075 * 2 1 3 7 7 O 1.21615 * 120.00001 * 99.02163 * 6 5 4 8 8 N 1.34778 * 120.00080 * 279.01785 * 6 5 4 9 9 C 1.48142 * 127.83780 * 359.97438 * 8 6 5 10 10 C 1.54387 * 104.61747 * 140.41212 * 9 8 6 11 11 H 1.09003 * 110.43473 * 142.78463 * 10 9 8 12 12 N 1.46501 * 110.34402 * 264.99590 * 10 9 8 13 13 C 1.36934 * 120.00027 * 270.53808 * 12 10 9 14 14 H 1.07999 * 120.00179 * 359.97438 * 13 12 10 15 15 C 1.38810 * 119.99870 * 180.02562 * 13 12 10 16 16 N 1.31623 * 120.00278 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00073 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47039 * 90.00665 * 17 15 13 19 19 H 1.48499 * 109.47426 * 210.00296 * 17 15 13 20 20 H 1.48501 * 109.47502 * 330.00563 * 17 15 13 21 21 C 1.54291 * 104.96157 * 23.86995 * 10 9 8 22 22 C 1.52997 * 110.34499 * 118.86803 * 21 10 9 23 23 C 1.52995 * 110.33972 * 241.02506 * 21 10 9 24 24 C 1.48313 * 127.76908 * 179.90810 * 8 6 5 25 25 H 1.08998 * 109.46825 * 300.00367 * 1 2 3 26 26 H 1.09008 * 109.46989 * 59.99624 * 1 2 3 27 27 H 1.08991 * 109.46890 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47335 * 240.00200 * 2 1 3 29 29 H 1.08999 * 109.46980 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46754 * 300.00532 * 3 2 1 31 31 H 1.08999 * 109.46719 * 59.99823 * 3 2 1 32 32 H 1.08997 * 110.40733 * 21.62802 * 9 8 6 33 33 H 1.09000 * 110.40739 * 259.19774 * 9 8 6 34 34 H 0.96998 * 119.99512 * 90.53935 * 12 10 9 35 35 H 0.96996 * 120.00374 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47153 * 181.47474 * 22 21 10 37 37 H 1.09001 * 109.46832 * 61.47665 * 22 21 10 38 38 H 1.09004 * 109.47261 * 301.47646 * 22 21 10 39 39 H 1.09000 * 109.47205 * 298.51933 * 23 21 10 40 40 H 1.09005 * 109.47310 * 58.52396 * 23 21 10 41 41 H 1.09004 * 109.47077 * 178.52249 * 23 21 10 42 42 H 1.08994 * 110.38948 * 100.79266 * 24 8 6 43 43 H 1.09001 * 110.50640 * 338.30238 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9224 3.3296 7 8 3.7173 -2.8071 3.2255 8 7 2.4212 -1.5772 4.5454 9 6 1.4209 -0.5342 4.8715 10 6 0.5577 -1.1582 5.9891 11 1 0.2780 -0.4009 6.7216 12 7 -0.6398 -1.7814 5.4198 13 6 -1.7842 -1.0465 5.2605 14 1 -1.8042 -0.0076 5.5549 15 6 -2.9189 -1.6372 4.7216 16 7 -4.0188 -0.9307 4.5680 17 14 -2.8845 -3.4342 4.2131 18 1 -3.2921 -4.2817 5.3624 19 1 -3.8244 -3.6471 3.0834 20 1 -1.5098 -3.8027 3.7894 21 6 1.4605 -2.2266 6.6402 22 6 1.6926 -1.8989 8.1165 23 6 0.8311 -3.6137 6.4968 24 6 2.7907 -2.1573 5.8594 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.8080 -0.3093 3.9986 33 1 1.9158 0.3675 5.2321 34 1 -0.6219 -2.7146 5.1558 35 1 -4.8116 -1.3434 4.1911 36 1 2.3525 -2.6473 8.5554 37 1 0.7386 -1.9017 8.6437 38 1 2.1522 -0.9142 8.2022 39 1 -0.1303 -3.6314 7.0100 40 1 0.6833 -3.8383 5.4404 41 1 1.4921 -4.3600 6.9378 42 1 3.5003 -1.5099 6.3743 43 1 3.2089 -3.1558 5.7320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507431523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:41 Heat of formation + Delta-G solvation = 9.142241 kcal Electronic energy + Delta-G solvation = -22418.888830 eV Core-core repulsion = 19272.074109 eV Total energy + Delta-G solvation = -3146.814721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41304 -39.46540 -37.37201 -35.92323 -34.76175 -33.11643 -32.86094 -29.77533 -28.22663 -28.11223 -27.93736 -25.59830 -24.52410 -23.09898 -21.81016 -20.53741 -19.42670 -18.82151 -17.58680 -17.17495 -16.83004 -16.51947 -16.10482 -15.57976 -15.30724 -15.07799 -14.97456 -14.39437 -14.29095 -13.99490 -13.61546 -13.50062 -13.15246 -13.11455 -13.08788 -12.98086 -12.74468 -12.62959 -12.48608 -12.37822 -12.25036 -12.01209 -11.97363 -11.59457 -11.58395 -11.40528 -11.40437 -11.21064 -11.03857 -9.96939 -9.25136 -8.04174 -5.35058 0.41005 1.14799 1.29917 1.31942 1.36729 1.90581 2.37597 2.42448 2.93926 3.25230 3.49791 3.51990 3.73132 3.98151 4.03039 4.06186 4.12420 4.25073 4.36373 4.38744 4.50983 4.63655 4.73852 4.74394 4.75645 4.83237 4.85848 4.90939 4.91799 4.94048 5.05281 5.07918 5.22264 5.27748 5.29903 5.30200 5.32827 5.51915 5.78167 6.15170 6.20971 6.29017 6.84766 7.06003 7.83067 8.00405 9.17003 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.007971 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.054030 B = 3511.945177 C = 5189.717558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.140 4.140 4 C -0.052 4.052 5 C -0.272 4.272 6 C 0.647 3.353 7 O -0.575 6.575 8 N -0.603 5.603 9 C 0.080 3.920 10 C 0.169 3.831 11 H 0.088 0.912 12 N -0.746 5.746 13 C -0.220 4.220 14 H 0.071 0.929 15 C -0.050 4.050 16 N -0.975 5.975 17 Si 0.930 3.070 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.274 1.274 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.135 4.135 24 C 0.116 3.884 25 H 0.045 0.955 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.124 0.876 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.024 0.976 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.120 2.773 -1.606 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.197 4.197 4 C -0.055 4.055 5 C -0.275 4.275 6 C 0.437 3.563 7 O -0.458 6.458 8 N -0.334 5.334 9 C -0.045 4.045 10 C 0.059 3.941 11 H 0.106 0.894 12 N -0.390 5.390 13 C -0.351 4.351 14 H 0.089 0.911 15 C -0.242 4.242 16 N -0.626 5.626 17 Si 0.760 3.240 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.200 1.200 21 C -0.083 4.083 22 C -0.183 4.183 23 C -0.192 4.192 24 C -0.005 4.005 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.422 2.455 -1.699 14.728 hybrid contribution -0.713 -1.269 -0.591 1.571 sum 13.709 1.186 -2.290 13.950 Atomic orbital electron populations 1.21860 0.92633 1.02255 1.03637 1.18858 0.96103 0.96335 0.89748 1.21831 1.01678 0.92312 1.03845 1.23574 0.92979 0.93333 0.95568 1.20745 1.05511 1.03748 0.97449 1.14397 0.80321 0.81058 0.80500 1.90762 1.35442 1.33037 1.86529 1.48829 1.41733 1.37503 1.05321 1.23457 0.89885 0.90797 1.00374 1.21489 0.85245 0.94578 0.92779 0.89424 1.43151 1.09256 1.10900 1.75647 1.19093 0.88498 0.95056 1.32482 0.91098 1.25199 0.95874 1.00626 1.02542 1.69823 1.02756 1.37087 1.52944 0.85800 0.77015 0.83158 0.78051 1.20130 1.22273 1.19953 1.21800 0.93635 0.95362 0.97537 1.21762 1.02442 1.02914 0.91153 1.21751 1.01358 0.96276 0.99849 1.22758 0.96813 1.00248 0.80730 0.93543 0.88123 0.93603 0.85833 0.91672 0.88443 0.92874 0.92172 0.88343 0.79959 0.93456 0.90471 0.92472 0.90482 0.92495 0.95713 0.90265 0.87486 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.15 71.98 0.66 -2.79 16 2 C 0.01 0.16 3.30 -12.60 -0.04 0.12 16 3 C -0.14 -2.36 9.15 71.98 0.66 -1.70 16 4 C -0.05 -1.63 12.56 31.13 0.39 -1.23 16 5 C -0.27 -10.01 12.50 30.02 0.38 -9.63 16 6 C 0.65 25.13 7.75 85.49 0.66 25.79 16 7 O -0.58 -24.97 17.35 -4.08 -0.07 -25.04 16 8 N -0.60 -20.25 3.32 -816.44 -2.71 -22.96 16 9 C 0.08 2.62 6.61 86.53 0.57 3.19 16 10 C 0.17 5.78 3.35 45.90 0.15 5.94 16 11 H 0.09 2.90 7.66 -2.39 -0.02 2.88 16 12 N -0.75 -33.29 4.40 -318.64 -1.40 -34.69 16 13 C -0.22 -11.87 10.44 84.03 0.88 -10.99 16 14 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 15 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 16 N -0.98 -60.64 13.97 21.65 0.30 -60.34 16 17 Si 0.93 46.16 27.73 68.60 1.90 48.07 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 20 H -0.27 -13.17 6.52 99.48 0.65 -12.52 16 21 C -0.08 -2.23 1.03 -51.27 -0.05 -2.28 16 22 C -0.13 -2.49 8.24 71.98 0.59 -1.90 16 23 C -0.13 -4.11 7.11 71.98 0.51 -3.60 16 24 C 0.12 3.10 6.15 86.51 0.53 3.63 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 2.34 7.35 -2.39 -0.02 2.32 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.36 16.68 2.95 -92.71 -0.27 16.41 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.26 8.13 -2.38 -0.02 1.24 16 39 H 0.06 1.86 7.84 -2.39 -0.02 1.84 16 40 H 0.02 0.88 6.88 -2.38 -0.02 0.86 16 41 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.11 2.19 7.85 -2.39 -0.02 2.17 16 43 H 0.08 2.20 7.60 -2.39 -0.02 2.18 16 Total: -1.00 -72.29 352.54 5.04 -67.26 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.65 Total: 25.61 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.36 Total: 2.11 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -3.81 Total: -118.00 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.04 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.07 kcal Total: -72.29 5.04 -67.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507431523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.398 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds