Wall clock time and date at job start Tue Mar 31 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.47206 * 109.46710 * 119.99898 * 2 1 3 5 5 C 2.64600 * 109.46765 * 119.99745 * 2 1 3 6 6 C 4.07801 * 109.46849 * 119.99898 * 2 1 3 7 7 O 1.21608 * 120.00514 * 13.99119 * 6 5 4 8 8 N 1.34786 * 119.99725 * 193.98825 * 6 5 4 9 9 C 1.47485 * 127.03052 * 0.02623 * 8 6 5 10 10 C 1.54005 * 107.24392 * 154.61643 * 9 8 6 11 11 H 1.09002 * 110.32577 * 242.21487 * 10 9 8 12 12 N 1.46496 * 110.32767 * 120.10236 * 10 9 8 13 13 C 1.36938 * 120.00289 * 86.45241 * 12 10 9 14 14 H 1.07995 * 119.99769 * 0.02562 * 13 12 10 15 15 C 1.38810 * 119.99829 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99614 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00326 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47030 * 90.00212 * 17 15 13 19 19 H 1.48497 * 109.47379 * 209.99911 * 17 15 13 20 20 H 1.48497 * 109.47282 * 330.00418 * 17 15 13 21 21 C 1.54616 * 105.04550 * 1.20635 * 10 9 8 22 22 C 1.52999 * 110.73839 * 140.18699 * 21 10 9 23 23 C 1.53004 * 110.74066 * 263.33330 * 21 10 9 24 24 C 1.48377 * 127.17223 * 179.82253 * 8 6 5 25 25 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47440 * 300.00199 * 1 2 3 27 27 H 1.09004 * 109.47033 * 60.00274 * 1 2 3 28 28 H 1.08993 * 109.47285 * 239.99808 * 2 1 3 29 29 H 1.09006 * 109.46673 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47255 * 299.99587 * 3 2 1 31 31 H 1.08995 * 109.47304 * 60.00327 * 3 2 1 32 32 H 1.09002 * 109.91598 * 35.15729 * 9 8 6 33 33 H 1.08999 * 109.91369 * 274.06810 * 9 8 6 34 34 H 0.97005 * 119.99777 * 266.44910 * 12 10 9 35 35 H 0.97004 * 120.00246 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46800 * 60.00464 * 22 21 10 37 37 H 1.09000 * 109.46856 * 179.97438 * 22 21 10 38 38 H 1.09002 * 109.47265 * 300.00125 * 22 21 10 39 39 H 1.09005 * 109.46948 * 59.99904 * 23 21 10 40 40 H 1.08999 * 109.46853 * 179.97438 * 23 21 10 41 41 H 1.09001 * 109.46580 * 300.00009 * 23 21 10 42 42 H 1.09005 * 110.51886 * 100.79006 * 24 8 6 43 43 H 1.09006 * 110.83140 * 337.82723 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2020 5 6 2.4118 -1.2473 2.1606 6 6 2.8891 -1.9224 3.3298 7 8 2.3775 -2.9687 3.6793 8 7 3.9056 -1.3980 4.0429 9 6 4.6346 -0.1469 3.7627 10 6 5.2072 0.3572 5.1005 11 1 4.7830 1.3294 5.3517 12 7 6.6679 0.4436 5.0286 13 6 7.2637 1.5762 4.5414 14 1 6.6567 2.4060 4.2106 15 6 8.6477 1.6578 4.4728 16 7 9.2203 2.7467 4.0050 17 14 9.6974 0.2229 5.0456 18 1 9.9434 -0.6966 3.9058 19 1 10.9943 0.7323 5.5593 20 1 8.9892 -0.5079 6.1271 21 6 4.7825 -0.7022 6.1436 22 6 5.9122 -0.9628 7.1420 23 6 3.5090 -0.2662 6.8710 24 6 4.5196 -1.9565 5.2728 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9526 0.5952 3.3476 33 1 5.4458 -0.3391 3.0606 34 1 7.2130 -0.3016 5.3261 35 1 10.1874 2.8036 3.9566 36 1 6.1587 -0.0367 7.6614 37 1 5.5911 -1.7110 7.8667 38 1 6.7912 -1.3259 6.6095 39 1 2.7026 -0.1408 6.1483 40 1 3.2285 -1.0267 7.5997 41 1 3.6886 0.6793 7.3828 42 1 5.4551 -2.4637 5.0364 43 1 3.8315 -2.6363 5.7753 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507431524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:45 Heat of formation + Delta-G solvation = 26.627493 kcal Electronic energy + Delta-G solvation = -21987.758829 eV Core-core repulsion = 18841.702326 eV Total energy + Delta-G solvation = -3146.056503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08664 -38.07152 -36.49557 -34.21746 -33.32448 -31.82160 -31.15804 -28.19569 -27.41699 -27.06985 -26.73646 -24.02545 -23.26435 -21.69954 -20.62640 -19.05964 -17.67044 -17.50220 -16.31477 -15.78466 -15.69280 -14.82422 -14.69772 -14.44667 -13.93224 -13.83583 -13.67042 -13.23092 -12.91591 -12.56464 -12.48243 -12.23677 -12.09870 -12.03984 -11.89071 -11.66870 -11.60674 -11.58368 -11.22410 -11.04128 -10.73751 -10.56160 -10.39336 -10.33303 -10.26265 -10.07723 -9.96250 -9.62767 -9.07354 -8.49022 -7.41831 -5.86918 -3.24229 1.65869 2.31310 3.10892 3.29449 3.32627 3.39473 3.63355 4.05967 4.49828 4.66089 4.74696 4.87665 4.91822 4.94561 5.04588 5.25056 5.33024 5.38042 5.45572 5.54763 5.56031 5.57548 5.63548 5.71350 5.80213 5.85269 5.89481 5.94613 5.98976 6.03834 6.10046 6.15948 6.21895 6.28174 6.35898 6.45968 6.63431 6.72355 7.27733 7.64858 7.88279 8.18903 8.31863 9.09027 9.81211 9.99773 11.30896 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.005207 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.886932 B = 5376.026794 C = 6558.512980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.212 4.212 6 C 0.648 3.352 7 O -0.540 6.540 8 N -0.603 5.603 9 C 0.075 3.925 10 C 0.183 3.817 11 H 0.075 0.925 12 N -0.739 5.739 13 C -0.251 4.251 14 H 0.092 0.908 15 C 0.011 3.989 16 N -0.930 5.930 17 Si 0.879 3.121 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.091 4.091 22 C -0.129 4.129 23 C -0.129 4.129 24 C 0.118 3.882 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.365 0.635 35 H 0.261 0.739 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 -5.223 -2.486 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.214 4.214 6 C 0.437 3.563 7 O -0.420 6.420 8 N -0.335 5.335 9 C -0.051 4.051 10 C 0.071 3.929 11 H 0.093 0.907 12 N -0.382 5.382 13 C -0.380 4.380 14 H 0.109 0.891 15 C -0.186 4.186 16 N -0.576 5.576 17 Si 0.709 3.291 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.200 1.200 21 C -0.093 4.093 22 C -0.186 4.186 23 C -0.187 4.187 24 C -0.004 4.004 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.201 0.799 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.483 -5.556 -2.427 15.701 hybrid contribution 1.007 -0.910 0.176 1.369 sum -13.475 -6.466 -2.251 15.115 Atomic orbital electron populations 1.21843 0.93011 1.02686 1.02741 1.18485 0.96086 0.95388 0.90833 1.21859 1.02252 0.93607 1.02764 1.22564 0.96354 0.95665 0.93909 1.20615 1.02901 1.01074 0.96840 1.14227 0.78845 0.83166 0.80060 1.90815 1.58435 1.22865 1.69878 1.48671 1.32482 1.25189 1.27181 1.23440 0.95688 0.84194 1.01760 1.21047 0.85464 0.96446 0.89917 0.90683 1.42963 1.00127 1.18114 1.77044 1.19062 0.90573 0.93577 1.34836 0.89050 1.24647 0.96313 0.96846 1.00754 1.69693 1.09741 1.26908 1.51305 0.86666 0.80718 0.82988 0.78767 1.21033 1.21595 1.20046 1.21966 0.96440 0.95345 0.95527 1.21661 0.97111 1.02020 0.97856 1.21705 0.96049 1.01281 0.99659 1.22635 0.97770 0.95992 0.83954 0.92066 0.92003 0.91276 0.88195 0.91541 0.91276 0.91910 0.91575 0.90137 0.79896 0.92928 0.91314 0.93113 0.92256 0.92828 0.92700 0.92015 0.90784 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.15 37.16 0.34 -0.80 16 2 C 0.01 0.09 3.30 -93.40 -0.31 -0.21 16 3 C -0.15 -1.31 9.15 37.16 0.34 -0.97 16 4 C -0.08 -1.11 12.56 -37.12 -0.47 -1.58 16 5 C -0.21 -3.40 12.60 -38.84 -0.49 -3.89 16 6 C 0.65 11.50 7.74 -14.33 -0.11 11.38 16 7 O -0.54 -10.88 17.32 5.27 0.09 -10.78 16 8 N -0.60 -10.01 3.23 -172.41 -0.56 -10.56 16 9 C 0.07 1.28 6.52 -2.98 -0.02 1.26 16 10 C 0.18 3.25 3.09 -66.56 -0.21 3.04 16 11 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 12 N -0.74 -15.97 4.31 -52.10 -0.22 -16.20 16 13 C -0.25 -6.58 10.45 -15.06 -0.16 -6.73 16 14 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 15 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 16 N -0.93 -28.00 13.97 55.49 0.78 -27.23 16 17 Si 0.88 21.05 27.74 -169.99 -4.71 16.34 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.06 6.50 56.52 0.37 -5.70 16 21 C -0.09 -1.36 0.93 -152.63 -0.14 -1.50 16 22 C -0.13 -1.88 7.82 37.16 0.29 -1.59 16 23 C -0.13 -1.68 8.50 37.16 0.32 -1.37 16 24 C 0.12 1.81 5.99 -1.98 -0.01 1.79 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.08 7.71 -51.93 -0.40 0.68 16 33 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 34 H 0.37 7.81 3.37 -40.82 -0.14 7.67 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.95 6.21 -51.93 -0.32 0.62 16 39 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.12 8.02 -51.93 -0.42 0.71 16 43 H 0.08 1.21 7.79 -51.93 -0.40 0.81 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -31.18 353.43 -7.19 -38.36 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.16 Total: 5.70 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.72 Total: -0.95 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.01 Total: -53.99 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.18 -7.19 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507431524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.992 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds