Wall clock time and date at job start Tue Mar 31 2020 00:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.47206 * 109.46710 * 119.99898 * 2 1 3 5 5 C 2.64600 * 109.46765 * 119.99745 * 2 1 3 6 6 C 4.07801 * 109.46849 * 119.99898 * 2 1 3 7 7 O 1.21608 * 120.00514 * 13.99119 * 6 5 4 8 8 N 1.34786 * 119.99725 * 193.98825 * 6 5 4 9 9 C 1.47485 * 127.03052 * 0.02623 * 8 6 5 10 10 C 1.54005 * 107.24392 * 154.61643 * 9 8 6 11 11 H 1.09002 * 110.32577 * 242.21487 * 10 9 8 12 12 N 1.46496 * 110.32767 * 120.10236 * 10 9 8 13 13 C 1.36938 * 120.00289 * 86.45241 * 12 10 9 14 14 H 1.07995 * 119.99769 * 0.02562 * 13 12 10 15 15 C 1.38810 * 119.99829 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99614 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00326 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47030 * 90.00212 * 17 15 13 19 19 H 1.48497 * 109.47379 * 209.99911 * 17 15 13 20 20 H 1.48497 * 109.47282 * 330.00418 * 17 15 13 21 21 C 1.54616 * 105.04550 * 1.20635 * 10 9 8 22 22 C 1.52999 * 110.73839 * 140.18699 * 21 10 9 23 23 C 1.53004 * 110.74066 * 263.33330 * 21 10 9 24 24 C 1.48377 * 127.17223 * 179.82253 * 8 6 5 25 25 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47440 * 300.00199 * 1 2 3 27 27 H 1.09004 * 109.47033 * 60.00274 * 1 2 3 28 28 H 1.08993 * 109.47285 * 239.99808 * 2 1 3 29 29 H 1.09006 * 109.46673 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47255 * 299.99587 * 3 2 1 31 31 H 1.08995 * 109.47304 * 60.00327 * 3 2 1 32 32 H 1.09002 * 109.91598 * 35.15729 * 9 8 6 33 33 H 1.08999 * 109.91369 * 274.06810 * 9 8 6 34 34 H 0.97005 * 119.99777 * 266.44910 * 12 10 9 35 35 H 0.97004 * 120.00246 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46800 * 60.00464 * 22 21 10 37 37 H 1.09000 * 109.46856 * 179.97438 * 22 21 10 38 38 H 1.09002 * 109.47265 * 300.00125 * 22 21 10 39 39 H 1.09005 * 109.46948 * 59.99904 * 23 21 10 40 40 H 1.08999 * 109.46853 * 179.97438 * 23 21 10 41 41 H 1.09001 * 109.46580 * 300.00009 * 23 21 10 42 42 H 1.09005 * 110.51886 * 100.79006 * 24 8 6 43 43 H 1.09006 * 110.83140 * 337.82723 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2020 5 6 2.4118 -1.2473 2.1606 6 6 2.8891 -1.9224 3.3298 7 8 2.3775 -2.9687 3.6793 8 7 3.9056 -1.3980 4.0429 9 6 4.6346 -0.1469 3.7627 10 6 5.2072 0.3572 5.1005 11 1 4.7830 1.3294 5.3517 12 7 6.6679 0.4436 5.0286 13 6 7.2637 1.5762 4.5414 14 1 6.6567 2.4060 4.2106 15 6 8.6477 1.6578 4.4728 16 7 9.2203 2.7467 4.0050 17 14 9.6974 0.2229 5.0456 18 1 9.9434 -0.6966 3.9058 19 1 10.9943 0.7323 5.5593 20 1 8.9892 -0.5079 6.1271 21 6 4.7825 -0.7022 6.1436 22 6 5.9122 -0.9628 7.1420 23 6 3.5090 -0.2662 6.8710 24 6 4.5196 -1.9565 5.2728 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9526 0.5952 3.3476 33 1 5.4458 -0.3391 3.0606 34 1 7.2130 -0.3016 5.3261 35 1 10.1874 2.8036 3.9566 36 1 6.1587 -0.0367 7.6614 37 1 5.5911 -1.7110 7.8667 38 1 6.7912 -1.3259 6.6095 39 1 2.7026 -0.1408 6.1483 40 1 3.2285 -1.0267 7.5997 41 1 3.6886 0.6793 7.3828 42 1 5.4551 -2.4637 5.0364 43 1 3.8315 -2.6363 5.7753 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507431524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:44 Heat of formation + Delta-G solvation = 8.381896 kcal Electronic energy + Delta-G solvation = -21988.550018 eV Core-core repulsion = 18841.702326 eV Total energy + Delta-G solvation = -3146.847692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45337 -39.47641 -37.35567 -35.95682 -34.74333 -33.10944 -32.86317 -29.73174 -28.25987 -28.08039 -27.98466 -25.66292 -24.48968 -23.11429 -21.81375 -20.58635 -19.43969 -18.79829 -17.57221 -17.20455 -16.78854 -16.45410 -16.06884 -15.56039 -15.41472 -15.12840 -14.69331 -14.64733 -14.44533 -13.91487 -13.60895 -13.45645 -13.27695 -13.12086 -12.98582 -12.91162 -12.80338 -12.66432 -12.45341 -12.37712 -12.18160 -12.01795 -11.96676 -11.60331 -11.57463 -11.37025 -11.31338 -11.25833 -11.00609 -9.87694 -9.36989 -8.01003 -5.35332 0.41374 1.14198 1.38558 1.40941 1.48167 1.86825 2.37531 2.49014 2.90971 3.28975 3.44080 3.51064 3.72040 3.91927 4.01613 4.05911 4.14506 4.22458 4.30656 4.40360 4.46192 4.58401 4.68648 4.77056 4.81733 4.84299 4.90678 4.92588 4.94010 4.98339 5.03490 5.06010 5.09918 5.26355 5.30393 5.33707 5.35013 5.46597 5.79523 6.15028 6.22496 6.27743 6.82716 7.08211 7.82066 8.01466 9.19993 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.005207 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.886932 B = 5376.026794 C = 6558.512980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.005 3.995 3 C -0.146 4.146 4 C -0.046 4.046 5 C -0.272 4.272 6 C 0.648 3.352 7 O -0.571 6.571 8 N -0.600 5.600 9 C 0.087 3.913 10 C 0.177 3.823 11 H 0.071 0.929 12 N -0.738 5.738 13 C -0.228 4.228 14 H 0.063 0.937 15 C -0.055 4.055 16 N -0.981 5.981 17 Si 0.939 3.061 18 H -0.284 1.284 19 H -0.298 1.298 20 H -0.243 1.243 21 C -0.080 4.080 22 C -0.127 4.127 23 C -0.125 4.125 24 C 0.115 3.885 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.370 0.630 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 -6.344 -2.317 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 C -0.203 4.203 4 C -0.048 4.048 5 C -0.275 4.275 6 C 0.439 3.561 7 O -0.453 6.453 8 N -0.331 5.331 9 C -0.038 4.038 10 C 0.067 3.933 11 H 0.089 0.911 12 N -0.383 5.383 13 C -0.359 4.359 14 H 0.081 0.919 15 C -0.247 4.247 16 N -0.631 5.631 17 Si 0.767 3.233 18 H -0.211 1.211 19 H -0.225 1.225 20 H -0.168 1.168 21 C -0.082 4.082 22 C -0.185 4.185 23 C -0.182 4.182 24 C -0.006 4.006 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.206 0.794 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.897 -6.705 -2.233 17.397 hybrid contribution 1.296 -0.488 0.023 1.385 sum -14.601 -7.193 -2.210 16.426 Atomic orbital electron populations 1.21849 0.91300 1.02931 1.03859 1.18883 0.97392 0.95448 0.89596 1.21870 1.01313 0.93277 1.03867 1.23539 0.93961 0.93762 0.93547 1.20619 1.05488 1.03414 0.97984 1.14405 0.78542 0.82815 0.80345 1.90778 1.59439 1.24165 1.70892 1.48658 1.32154 1.24810 1.27506 1.23116 0.95225 0.84715 1.00772 1.21214 0.83260 0.97533 0.91341 0.91100 1.42903 1.01801 1.16786 1.76763 1.19017 0.90347 0.93856 1.32681 0.91936 1.25365 0.97774 0.99508 1.02054 1.69863 1.09715 1.29506 1.54014 0.85662 0.78648 0.79922 0.79057 1.21102 1.22504 1.16753 1.21921 0.97582 0.93764 0.94888 1.21651 0.96321 1.02479 0.98044 1.21676 0.94574 1.02231 0.99718 1.22770 0.98037 0.96279 0.83533 0.92283 0.92597 0.88512 0.85984 0.93017 0.88482 0.92585 0.91038 0.92129 0.79392 0.93429 0.92173 0.90045 0.93530 0.93555 0.90569 0.91516 0.90612 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.15 71.98 0.66 -1.19 16 2 C 0.00 0.08 3.30 -12.60 -0.04 0.03 16 3 C -0.15 -2.29 9.15 71.98 0.66 -1.64 16 4 C -0.05 -1.18 12.56 31.13 0.39 -0.79 16 5 C -0.27 -8.74 12.60 30.02 0.38 -8.36 16 6 C 0.65 23.03 7.74 85.49 0.66 23.69 16 7 O -0.57 -23.00 17.32 -4.05 -0.07 -23.07 16 8 N -0.60 -19.64 3.23 -817.62 -2.64 -22.28 16 9 C 0.09 2.98 6.52 86.53 0.56 3.55 16 10 C 0.18 6.16 3.09 45.88 0.14 6.31 16 11 H 0.07 2.56 7.83 -2.39 -0.02 2.54 16 12 N -0.74 -31.47 4.31 -318.74 -1.38 -32.85 16 13 C -0.23 -12.11 10.45 84.03 0.88 -11.23 16 14 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 15 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 16 N -0.98 -60.70 13.97 21.65 0.30 -60.40 16 17 Si 0.94 43.36 27.74 68.60 1.90 45.27 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.24 -9.85 6.50 99.48 0.65 -9.20 16 21 C -0.08 -2.23 0.93 -50.97 -0.05 -2.28 16 22 C -0.13 -3.37 7.82 71.98 0.56 -2.81 16 23 C -0.12 -2.95 8.50 71.98 0.61 -2.34 16 24 C 0.12 3.33 5.99 86.68 0.52 3.85 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 2.35 7.71 -2.39 -0.02 2.33 16 33 H 0.06 2.33 7.92 -2.39 -0.02 2.31 16 34 H 0.37 15.21 3.37 -92.70 -0.31 14.90 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.35 6.21 -2.39 -0.01 1.34 16 39 H 0.05 1.17 8.09 -2.38 -0.02 1.15 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 2.17 8.02 -2.38 -0.02 2.15 16 43 H 0.09 2.54 7.79 -2.38 -0.02 2.52 16 Total: -1.00 -68.88 353.43 5.13 -63.74 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.61 Total: 25.42 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.40 Total: 4.16 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -3.71 Total: -115.52 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.07 Total: -23.07 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.90 Total: 45.27 kcal Total: -68.88 5.13 -63.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507431524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.125 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds