Wall clock time and date at job start Tue Mar 31 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 C 1.53000 * 109.46923 * 240.00113 * 2 1 3 5 5 C 1.52996 * 109.47473 * 120.00225 * 2 1 3 6 6 H 1.09000 * 109.47145 * 299.99572 * 5 2 1 7 7 C 1.53006 * 109.47102 * 59.99809 * 5 2 1 8 8 N 1.46504 * 109.46883 * 175.00371 * 7 5 2 9 9 C 1.36936 * 119.99477 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00404 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99891 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47326 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47231 * 119.99688 * 13 11 9 16 16 H 1.48502 * 109.47486 * 239.99534 * 13 11 9 17 17 N 1.46498 * 109.47308 * 179.97438 * 5 2 1 18 18 C 1.34783 * 120.00018 * 85.00189 * 17 5 2 19 19 O 1.21614 * 119.99679 * 0.02562 * 18 17 5 20 20 C 1.43192 * 120.00322 * 179.97438 * 18 17 5 21 21 C 5.54648 * 161.34292 * 79.07220 * 2 1 3 22 22 C 6.95706 * 165.22420 * 79.07265 * 2 1 3 23 23 C 1.52998 * 117.50103 * 28.33375 * 22 21 20 24 24 C 1.53004 * 117.50165 * 319.70816 * 22 21 20 25 25 H 1.09006 * 109.47004 * 300.00000 * 1 2 3 26 26 H 1.08998 * 109.47374 * 59.99604 * 1 2 3 27 27 H 1.09002 * 109.47721 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47312 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46984 * 300.00308 * 3 2 1 30 30 H 1.08993 * 109.47243 * 60.00129 * 3 2 1 31 31 H 1.09002 * 109.47044 * 299.99923 * 4 2 1 32 32 H 1.09004 * 109.47376 * 59.99482 * 4 2 1 33 33 H 1.08996 * 109.47552 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 294.99868 * 7 5 2 35 35 H 1.08993 * 109.46955 * 55.00306 * 7 5 2 36 36 H 0.96992 * 119.99966 * 359.97438 * 8 7 5 37 37 H 0.96993 * 120.00031 * 180.02562 * 12 11 9 38 38 H 0.96995 * 120.00562 * 265.00143 * 17 5 2 39 39 H 1.09005 * 115.54730 * 174.03879 * 22 21 20 40 40 H 1.08996 * 117.50043 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.50206 * 145.02177 * 23 22 21 42 42 H 1.08993 * 117.49892 * 214.98065 * 24 22 21 43 43 H 1.08996 * 117.49473 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6768 -0.2074 2.1392 7 6 1.5300 -2.1638 1.2491 8 7 2.1142 -2.8883 2.3806 9 6 1.8011 -4.2056 2.5852 10 1 1.1232 -4.7103 1.9128 11 6 2.3550 -4.8922 3.6569 12 7 3.1815 -4.2773 4.4762 13 14 1.9274 -6.6890 3.9365 14 1 0.9844 -7.1432 2.8830 15 1 3.1652 -7.5073 3.8782 16 1 1.2932 -6.8452 5.2701 17 7 3.5050 -0.7218 1.2488 18 6 4.1794 0.3359 1.7419 19 8 3.5717 1.2905 2.1875 20 6 5.6113 0.3352 1.7421 21 6 6.7849 0.3364 1.7422 22 6 8.2569 0.3363 1.7421 23 6 8.9634 -0.8582 1.0980 24 6 8.9635 -0.6988 2.6198 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6765 -1.7489 -1.2493 32 1 1.6765 -0.2074 -2.1393 33 1 3.1298 -0.7209 -1.2496 34 1 0.4437 -2.1651 1.3388 35 1 1.8183 -2.6511 0.3178 36 1 2.7232 -2.4351 2.9843 37 1 3.5689 -4.7571 5.2248 38 1 3.9897 -1.4832 0.8938 39 1 8.7270 1.3145 1.6400 40 1 8.3382 -1.6443 0.6747 41 1 9.8985 -0.6661 0.5719 42 1 9.8985 -0.4019 3.0946 43 1 8.3382 -1.3801 3.1968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507940042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:44 Heat of formation + Delta-G solvation = 42.619080 kcal Electronic energy + Delta-G solvation = -21850.418007 eV Core-core repulsion = 18705.054951 eV Total energy + Delta-G solvation = -3145.363056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02694 -37.73849 -37.32738 -34.44080 -33.33124 -32.40889 -31.00860 -27.82195 -27.11939 -26.84883 -24.77281 -23.61431 -22.59680 -21.93773 -21.25330 -18.76639 -18.35957 -17.06855 -16.54620 -16.01516 -15.56046 -15.12416 -14.75029 -14.09360 -13.90776 -13.83124 -13.48932 -13.15821 -12.73386 -12.70177 -12.24545 -12.08570 -11.89694 -11.79697 -11.70120 -11.41483 -11.32639 -11.21327 -11.08991 -10.84096 -10.73970 -10.53235 -10.22753 -10.16805 -9.93079 -9.91959 -9.75920 -9.67985 -8.91435 -8.62291 -6.95891 -5.78815 -3.08695 1.71437 2.37247 3.30473 3.41223 3.46894 3.49192 3.53134 4.00582 4.24549 4.55258 4.60274 4.78930 4.92526 4.94849 5.05954 5.17660 5.41792 5.44125 5.53038 5.56968 5.65721 5.74738 5.79743 5.86608 5.90631 5.92088 5.93626 6.05016 6.09171 6.13791 6.17549 6.31655 6.45695 6.46748 6.49901 6.64359 6.72703 6.93048 7.34984 7.67338 7.80422 8.38672 8.45621 9.50554 10.06736 10.41852 11.43479 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.006219 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.342819 B = 4500.971124 C = 6831.235452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.142 4.142 5 C 0.149 3.851 6 H 0.090 0.910 7 C 0.142 3.858 8 N -0.732 5.732 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.694 5.694 18 C 0.633 3.367 19 O -0.528 6.528 20 C -0.205 4.205 21 C -0.068 4.068 22 C -0.063 4.063 23 C -0.161 4.161 24 C -0.160 4.160 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.407 0.593 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 9.209 -10.560 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.189 4.189 4 C -0.199 4.199 5 C 0.044 3.956 6 H 0.108 0.892 7 C 0.014 3.986 8 N -0.377 5.377 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.343 5.343 18 C 0.419 3.581 19 O -0.406 6.406 20 C -0.208 4.208 21 C -0.070 4.070 22 C -0.081 4.081 23 C -0.198 4.198 24 C -0.196 4.196 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.242 0.758 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.147 9.700 -10.261 15.400 hybrid contribution 0.273 -1.198 0.333 1.273 sum 6.419 8.502 -9.928 14.562 Atomic orbital electron populations 1.21883 0.93997 1.02342 1.01584 1.20909 0.95896 0.95857 0.95183 1.21904 1.00995 0.94846 1.01125 1.21920 1.00936 1.00632 0.96440 1.21370 0.78272 0.97877 0.98034 0.89207 1.21108 0.96768 0.88394 0.92332 1.42382 1.55417 1.09823 1.30081 1.19248 1.22372 0.86926 1.08674 0.91082 1.24756 0.99868 0.98287 0.97950 1.69684 1.34601 1.35840 1.17716 0.86126 0.77449 0.85018 0.77621 1.20548 1.21918 1.21860 1.45785 1.07596 1.19337 1.61562 1.14589 0.82163 0.83190 0.78140 1.90829 1.68467 1.34706 1.46597 1.20803 0.92514 1.02543 1.04894 1.21250 0.91986 0.98320 0.95461 1.18844 0.84071 0.96770 1.08382 1.23102 1.01986 0.98668 0.96033 1.23126 1.02042 1.00674 0.93802 0.92481 0.92823 0.91838 0.93029 0.93825 0.91880 0.91826 0.93113 0.92916 0.94467 0.95276 0.78047 0.93555 0.75824 0.85057 0.87943 0.87605 0.87525 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.12 37.15 0.30 -1.48 16 2 C -0.08 -1.08 0.62 -154.52 -0.10 -1.17 16 3 C -0.13 -1.90 7.00 37.16 0.26 -1.64 16 4 C -0.14 -1.80 7.97 37.16 0.30 -1.50 16 5 C 0.15 2.54 1.69 -67.93 -0.11 2.42 16 6 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 7 C 0.14 2.73 5.10 -4.04 -0.02 2.71 16 8 N -0.73 -18.10 5.43 -59.90 -0.33 -18.42 16 9 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 10 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 13 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 N -0.69 -11.77 3.63 -56.25 -0.20 -11.97 16 18 C 0.63 11.52 6.00 -14.33 -0.09 11.43 16 19 O -0.53 -10.78 14.21 5.27 0.07 -10.71 16 20 C -0.20 -3.45 13.61 -38.84 -0.53 -3.98 16 21 C -0.07 -0.99 13.47 -37.13 -0.50 -1.49 16 22 C -0.06 -0.66 6.22 -93.41 -0.58 -1.24 16 23 C -0.16 -1.42 10.21 -26.73 -0.27 -1.69 16 24 C -0.16 -1.51 10.21 -26.73 -0.27 -1.78 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 28 H 0.05 0.80 5.78 -51.93 -0.30 0.50 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 31 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.67 7.60 -51.93 -0.39 0.28 16 34 H 0.04 0.72 6.71 -51.93 -0.35 0.37 16 35 H 0.03 0.55 6.17 -51.93 -0.32 0.23 16 36 H 0.39 10.29 7.33 -40.82 -0.30 9.99 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.41 6.70 8.57 -40.82 -0.35 6.35 16 39 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -31.72 352.45 -8.12 -39.84 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.82 Total: 12.70 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.86 Total: -6.62 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.19 Total: -57.69 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.72 -8.12 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507940042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.458 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds