Wall clock time and date at job start Tue Mar 31 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 C 1.53000 * 109.46923 * 240.00113 * 2 1 3 5 5 C 1.52996 * 109.47473 * 120.00225 * 2 1 3 6 6 H 1.09000 * 109.47145 * 299.99572 * 5 2 1 7 7 C 1.53006 * 109.47102 * 59.99809 * 5 2 1 8 8 N 1.46504 * 109.46883 * 175.00371 * 7 5 2 9 9 C 1.36936 * 119.99477 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00404 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99891 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47326 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47231 * 119.99688 * 13 11 9 16 16 H 1.48502 * 109.47486 * 239.99534 * 13 11 9 17 17 N 1.46498 * 109.47308 * 179.97438 * 5 2 1 18 18 C 1.34783 * 120.00018 * 85.00189 * 17 5 2 19 19 O 1.21614 * 119.99679 * 0.02562 * 18 17 5 20 20 C 1.43192 * 120.00322 * 179.97438 * 18 17 5 21 21 C 5.54648 * 161.34292 * 79.07220 * 2 1 3 22 22 C 6.95706 * 165.22420 * 79.07265 * 2 1 3 23 23 C 1.52998 * 117.50103 * 28.33375 * 22 21 20 24 24 C 1.53004 * 117.50165 * 319.70816 * 22 21 20 25 25 H 1.09006 * 109.47004 * 300.00000 * 1 2 3 26 26 H 1.08998 * 109.47374 * 59.99604 * 1 2 3 27 27 H 1.09002 * 109.47721 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47312 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46984 * 300.00308 * 3 2 1 30 30 H 1.08993 * 109.47243 * 60.00129 * 3 2 1 31 31 H 1.09002 * 109.47044 * 299.99923 * 4 2 1 32 32 H 1.09004 * 109.47376 * 59.99482 * 4 2 1 33 33 H 1.08996 * 109.47552 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 294.99868 * 7 5 2 35 35 H 1.08993 * 109.46955 * 55.00306 * 7 5 2 36 36 H 0.96992 * 119.99966 * 359.97438 * 8 7 5 37 37 H 0.96993 * 120.00031 * 180.02562 * 12 11 9 38 38 H 0.96995 * 120.00562 * 265.00143 * 17 5 2 39 39 H 1.09005 * 115.54730 * 174.03879 * 22 21 20 40 40 H 1.08996 * 117.50043 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.50206 * 145.02177 * 23 22 21 42 42 H 1.08993 * 117.49892 * 214.98065 * 24 22 21 43 43 H 1.08996 * 117.49473 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6768 -0.2074 2.1392 7 6 1.5300 -2.1638 1.2491 8 7 2.1142 -2.8883 2.3806 9 6 1.8011 -4.2056 2.5852 10 1 1.1232 -4.7103 1.9128 11 6 2.3550 -4.8922 3.6569 12 7 3.1815 -4.2773 4.4762 13 14 1.9274 -6.6890 3.9365 14 1 0.9844 -7.1432 2.8830 15 1 3.1652 -7.5073 3.8782 16 1 1.2932 -6.8452 5.2701 17 7 3.5050 -0.7218 1.2488 18 6 4.1794 0.3359 1.7419 19 8 3.5717 1.2905 2.1875 20 6 5.6113 0.3352 1.7421 21 6 6.7849 0.3364 1.7422 22 6 8.2569 0.3363 1.7421 23 6 8.9634 -0.8582 1.0980 24 6 8.9635 -0.6988 2.6198 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6765 -1.7489 -1.2493 32 1 1.6765 -0.2074 -2.1393 33 1 3.1298 -0.7209 -1.2496 34 1 0.4437 -2.1651 1.3388 35 1 1.8183 -2.6511 0.3178 36 1 2.7232 -2.4351 2.9843 37 1 3.5689 -4.7571 5.2248 38 1 3.9897 -1.4832 0.8938 39 1 8.7270 1.3145 1.6400 40 1 8.3382 -1.6443 0.6747 41 1 9.8985 -0.6661 0.5719 42 1 9.8985 -0.4019 3.0946 43 1 8.3382 -1.3801 3.1968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507940042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:43 Heat of formation + Delta-G solvation = 23.266796 kcal Electronic energy + Delta-G solvation = -21851.257185 eV Core-core repulsion = 18705.054951 eV Total energy + Delta-G solvation = -3146.202234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42101 -38.81977 -38.45261 -36.22170 -34.80243 -33.67482 -32.90819 -29.46631 -28.17389 -28.00132 -26.23815 -25.20565 -23.35203 -23.30772 -22.64086 -20.07911 -19.82771 -18.85686 -17.58476 -17.40872 -17.01756 -16.52047 -15.98497 -15.61927 -15.40021 -15.26970 -14.87262 -14.70255 -14.23972 -13.83196 -13.52681 -13.18093 -13.05185 -12.99462 -12.95700 -12.77979 -12.60170 -12.44072 -12.40279 -12.29619 -12.16976 -12.04394 -11.78023 -11.69162 -11.39159 -11.33807 -11.08883 -10.94716 -10.72315 -10.02265 -9.01201 -7.94877 -5.24915 0.43378 1.16013 1.47521 1.48399 1.58403 2.03187 2.35256 2.55234 3.01942 3.14300 3.39720 3.61337 3.77499 3.82371 3.99532 4.01909 4.06002 4.22448 4.30200 4.38380 4.49388 4.61419 4.75878 4.80387 4.83531 4.86343 4.94393 4.95317 5.04913 5.06625 5.08700 5.12856 5.20805 5.22309 5.28805 5.37240 5.49372 5.53530 5.58239 6.13966 6.25432 6.39293 7.04725 7.32284 8.05440 8.29048 9.28530 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.006219 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.342819 B = 4500.971124 C = 6831.235452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.138 4.138 5 C 0.156 3.844 6 H 0.061 0.939 7 C 0.145 3.855 8 N -0.745 5.745 9 C -0.240 4.240 10 H 0.081 0.919 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.974 3.026 14 H -0.263 1.263 15 H -0.294 1.294 16 H -0.297 1.297 17 N -0.688 5.688 18 C 0.633 3.367 19 O -0.560 6.560 20 C -0.267 4.267 21 C -0.034 4.034 22 C -0.084 4.084 23 C -0.145 4.145 24 C -0.159 4.159 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.408 0.592 39 H 0.162 0.838 40 H 0.089 0.911 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 8.848 -12.583 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.181 4.181 4 C -0.195 4.195 5 C 0.051 3.949 6 H 0.079 0.921 7 C 0.019 3.981 8 N -0.388 5.388 9 C -0.372 4.372 10 H 0.099 0.901 11 C -0.268 4.268 12 N -0.621 5.621 13 Si 0.803 3.197 14 H -0.187 1.187 15 H -0.221 1.221 16 H -0.225 1.225 17 N -0.336 5.336 18 C 0.420 3.580 19 O -0.441 6.441 20 C -0.270 4.270 21 C -0.037 4.037 22 C -0.101 4.101 23 C -0.182 4.182 24 C -0.196 4.196 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.244 0.756 39 H 0.180 0.820 40 H 0.108 0.892 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.863 9.328 -12.339 16.923 hybrid contribution 0.090 -1.044 0.929 1.400 sum 6.953 8.284 -11.411 15.722 Atomic orbital electron populations 1.21880 0.92627 1.02625 1.02465 1.20876 0.96901 0.95303 0.94150 1.21806 0.99912 0.95109 1.01269 1.21884 1.00695 1.00596 0.96301 1.21275 0.78335 0.96540 0.98716 0.92123 1.21249 0.96765 0.89150 0.90980 1.42581 1.55426 1.09513 1.31275 1.19677 1.21347 0.87958 1.08206 0.90068 1.25583 1.00493 1.02507 0.98232 1.69854 1.36380 1.37417 1.18454 0.85063 0.77169 0.80065 0.77377 1.18705 1.22113 1.22487 1.45727 1.07587 1.19122 1.61168 1.14754 0.82908 0.82843 0.77457 1.90791 1.69354 1.35812 1.48171 1.20785 0.92803 1.05365 1.08020 1.22225 0.93075 0.95728 0.92658 1.19314 0.81475 0.99025 1.10277 1.23241 1.02560 0.96737 0.95654 1.23221 1.02506 0.99479 0.94369 0.93234 0.90387 0.91804 0.94618 0.91361 0.93900 0.91827 0.90854 0.93355 0.93802 0.93588 0.79670 0.94189 0.75597 0.82036 0.89219 0.84202 0.84517 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.12 71.98 0.58 -2.72 16 2 C -0.07 -1.93 0.62 -52.19 -0.03 -1.96 16 3 C -0.12 -3.54 7.00 71.98 0.50 -3.04 16 4 C -0.14 -3.22 7.97 71.98 0.57 -2.65 16 5 C 0.16 5.43 1.69 44.99 0.08 5.51 16 6 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 7 C 0.14 5.55 5.10 86.38 0.44 6.00 16 8 N -0.75 -37.40 5.43 -343.43 -1.87 -39.27 16 9 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 10 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 11 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 12 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 13 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 14 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 17 N -0.69 -24.33 3.63 -450.11 -1.63 -25.96 16 18 C 0.63 24.35 6.00 85.48 0.51 24.87 16 19 O -0.56 -24.33 14.21 -4.08 -0.06 -24.38 16 20 C -0.27 -9.40 13.61 30.02 0.41 -8.99 16 21 C -0.03 -1.01 13.47 31.13 0.42 -0.59 16 22 C -0.08 -1.58 6.22 -12.60 -0.08 -1.66 16 23 C -0.15 -2.18 10.21 30.60 0.31 -1.87 16 24 C -0.16 -2.71 10.21 30.60 0.31 -2.39 16 25 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.52 6.54 -2.39 -0.02 1.50 16 28 H 0.03 1.13 5.78 -2.39 -0.01 1.11 16 29 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 30 H 0.04 1.39 7.53 -2.39 -0.02 1.37 16 31 H 0.06 1.49 6.32 -2.39 -0.02 1.47 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.17 7.60 -2.39 -0.02 1.15 16 34 H 0.04 1.66 6.71 -2.39 -0.02 1.65 16 35 H 0.05 1.65 6.17 -2.39 -0.01 1.64 16 36 H 0.37 20.57 7.33 -92.71 -0.68 19.89 16 37 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.41 13.97 8.57 -92.71 -0.79 13.17 16 39 H 0.16 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -70.39 352.45 3.64 -66.75 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.45 Total: 40.26 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.34 Total: -5.68 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -3.22 Total: -124.82 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.39 3.64 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507940042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.017 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds